| Clone Name | rbags8h20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_477102.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1570 Score = 309 bits (156), Expect = 5e-81 Identities = 340/401 (84%), Gaps = 3/401 (0%) Strand = Plus / Minus Query: 127 atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186 ||||| |||||||||||| |||||| || ||| ||| || ||||| |||||||||||| Sbjct: 1371 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1314 Query: 187 gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246 |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | | Sbjct: 1313 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1254 Query: 247 tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306 |||||||| || || |||||||||||||| | |||||||| |||| ||||||||||| Sbjct: 1253 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1194 Query: 307 tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366 |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | || Sbjct: 1193 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1134 Query: 367 tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426 ||| | | | ||||| || |||| | | ||||| ||||||||||||||| ||||| Sbjct: 1133 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1074 Query: 427 tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486 |||| ||||||||||| | |||||| ||||||||||| || |||||||| |||||| || Sbjct: 1073 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1015 Query: 487 ctcaactgagtattccaagtcatcattgatgcggtacatgc 527 |||||| |||||||||||||||||||||||||||||||||| Sbjct: 1014 ctcaacagagtattccaagtcatcattgatgcggtacatgc 974
>ref|XM_506221.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_A05.4 mRNA Length = 1648 Score = 309 bits (156), Expect = 5e-81 Identities = 340/401 (84%), Gaps = 3/401 (0%) Strand = Plus / Minus Query: 127 atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186 ||||| |||||||||||| |||||| || ||| ||| || ||||| |||||||||||| Sbjct: 1378 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1321 Query: 187 gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246 |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | | Sbjct: 1320 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1261 Query: 247 tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306 |||||||| || || |||||||||||||| | |||||||| |||| ||||||||||| Sbjct: 1260 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1201 Query: 307 tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366 |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | || Sbjct: 1200 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1141 Query: 367 tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426 ||| | | | ||||| || |||| | | ||||| ||||||||||||||| ||||| Sbjct: 1140 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1081 Query: 427 tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486 |||| ||||||||||| | |||||| ||||||||||| || |||||||| |||||| || Sbjct: 1080 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1022 Query: 487 ctcaactgagtattccaagtcatcattgatgcggtacatgc 527 |||||| |||||||||||||||||||||||||||||||||| Sbjct: 1021 ctcaacagagtattccaagtcatcattgatgcggtacatgc 981
>dbj|AK059111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E02, full insert sequence Length = 1648 Score = 309 bits (156), Expect = 5e-81 Identities = 340/401 (84%), Gaps = 3/401 (0%) Strand = Plus / Minus Query: 127 atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186 ||||| |||||||||||| |||||| || ||| ||| || ||||| |||||||||||| Sbjct: 1378 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1321 Query: 187 gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246 |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | | Sbjct: 1320 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1261 Query: 247 tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306 |||||||| || || |||||||||||||| | |||||||| |||| ||||||||||| Sbjct: 1260 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1201 Query: 307 tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366 |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | || Sbjct: 1200 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1141 Query: 367 tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426 ||| | | | ||||| || |||| | | ||||| ||||||||||||||| ||||| Sbjct: 1140 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1081 Query: 427 tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486 |||| ||||||||||| | |||||| ||||||||||| || |||||||| |||||| || Sbjct: 1080 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1022 Query: 487 ctcaactgagtattccaagtcatcattgatgcggtacatgc 527 |||||| |||||||||||||||||||||||||||||||||| Sbjct: 1021 ctcaacagagtattccaagtcatcattgatgcggtacatgc 981
>dbj|AK099319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003F07, full insert sequence Length = 1570 Score = 301 bits (152), Expect = 1e-78 Identities = 339/401 (84%), Gaps = 3/401 (0%) Strand = Plus / Minus Query: 127 atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186 ||||| |||||||||||| |||||| || ||| ||| || ||||| |||||||||||| Sbjct: 1371 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1314 Query: 187 gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246 |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | | Sbjct: 1313 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1254 Query: 247 tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306 |||||||| || || |||||||||||||| | |||||||| |||| ||||||||||| Sbjct: 1253 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1194 Query: 307 tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366 |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | || Sbjct: 1193 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1134 Query: 367 tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426 ||| | | | ||||| || |||| | | ||||| ||||||||||||||| ||||| Sbjct: 1133 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1074 Query: 427 tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486 |||| ||||||||||| | |||||| ||||||||||| || |||||||| |||||| || Sbjct: 1073 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1015 Query: 487 ctcaactgagtattccaagtcatcattgatgcggtacatgc 527 |||||| |||||||||||||||||||||||||||| ||||| Sbjct: 1014 ctcaacagagtattccaagtcatcattgatgcggtgcatgc 974
>gb|AY103792.1| Zea mays PCO149739 mRNA sequence Length = 2093 Score = 299 bits (151), Expect = 5e-78 Identities = 297/347 (85%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 181 cccattgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatac 240 |||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||| Sbjct: 1641 cccattgttgaaaatgaggcagtgtagtatgggtacgctgatgttatgaatctctcatac 1582 Query: 241 tcgtcatgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatcca 300 || | ||| ||||| || ||||||||||||||||||| || ||| | |||| ||||| Sbjct: 1581 tcattatgtctgtaaggacgtactggaatctgctttgtaaaagacagaccagtatatccc 1522 Query: 301 agcctttggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggat 360 || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| | Sbjct: 1521 agtctttggtactcaactttgaactggaaaactccataaacatctggaactttgaaggtt 1462 Query: 361 gctnaatatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatg 420 | | |||| | | | | ||||| || |||||| || | ||||||||||||||||||||| Sbjct: 1461 gttgaatacaaacccttgttgtcagtcgacatagttttcagaacgtaagggctcatcatg 1402 Query: 421 aaaaactgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttc 480 ||||| |||| ||| |||||||| | |||||| ||||||||||||||||| ||||| ||| Sbjct: 1401 aaaaattgaagctgcacatcatcagcaacatacggcttccagcttgttccggacca-ttc 1343 Query: 481 gtatatctcaactgagtattccaagtcatcattgatgcggtacatgc 527 || |||||||| |||||||||| ||||||||| ||||||||||||| Sbjct: 1342 atagatctcaacagagtattccaggtcatcattaatgcggtacatgc 1296
>gb|BT017987.1| Zea mays clone EL01N0525H08.c mRNA sequence Length = 1602 Score = 291 bits (147), Expect = 1e-75 Identities = 296/347 (85%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 181 cccattgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatac 240 |||||||||||||||||||| | |||||||| ||||||| |||||||| ||||||||| Sbjct: 1286 cccattgttgaaaatgaggcggtgtagtatgggtacgctgatgttatgaatctctcatac 1227 Query: 241 tcgtcatgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatcca 300 || | ||| ||||| || ||||||||||||||||||| || ||| | |||| ||||| Sbjct: 1226 tcattatgtctgtaaggacgtactggaatctgctttgtaaaagacagaccagtatatccc 1167 Query: 301 agcctttggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggat 360 || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| | Sbjct: 1166 agtctttggtactcaactttgaactggaaaactccataaacatctggaactttgaaggtt 1107 Query: 361 gctnaatatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatg 420 | | |||| | | | | ||||| || |||||| || | ||||||||||||||||||||| Sbjct: 1106 gttgaatacaaacccttgttgtcagtcgacatagttttcagaacgtaagggctcatcatg 1047 Query: 421 aaaaactgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttc 480 ||||| |||| ||| |||||||| | |||||| ||||||||||||||||| ||||| ||| Sbjct: 1046 aaaaattgaagctgcacatcatcagcaacatacggcttccagcttgttccggacca-ttc 988 Query: 481 gtatatctcaactgagtattccaagtcatcattgatgcggtacatgc 527 || |||||||| |||||||||| ||||||||| ||||||||||||| Sbjct: 987 atagatctcaacagagtattccaggtcatcattaatgcggtacatgc 941
>gb|BT017639.1| Zea mays clone EL01N0438G02.c mRNA sequence Length = 1151 Score = 291 bits (147), Expect = 1e-75 Identities = 296/347 (85%), Gaps = 1/347 (0%) Strand = Plus / Minus Query: 181 cccattgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatac 240 |||||||||||||||||||| | |||||||| ||||||| |||||||| ||||||||| Sbjct: 800 cccattgttgaaaatgaggcggtgtagtatgggtacgctgatgttatgaatctctcatac 741 Query: 241 tcgtcatgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatcca 300 || | ||| ||||| || ||||||||||||||||||| || ||| | |||| ||||| Sbjct: 740 tcattatgtctgtaaggacgtactggaatctgctttgtaaaagacagaccagtatatccc 681 Query: 301 agcctttggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggat 360 || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| | Sbjct: 680 agtctttggtactcaactttgaactggaaaactccataaacatctggaactttgaaggtt 621 Query: 361 gctnaatatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatg 420 | | |||| | | | | ||||| || |||||| || | ||||||||||||||||||||| Sbjct: 620 gttgaatacaaacccttgttgtcagtcgacatagttttcagaacgtaagggctcatcatg 561 Query: 421 aaaaactgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttc 480 ||||| |||| ||| |||||||| | |||||| ||||||||||||||||| ||||| ||| Sbjct: 560 aaaaattgaagctgcacatcatcagcaacatacggcttccagcttgttccggacca-ttc 502 Query: 481 gtatatctcaactgagtattccaagtcatcattgatgcggtacatgc 527 || |||||||| |||||||||| ||||||||| ||||||||||||| Sbjct: 501 atagatctcaacagagtattccaggtcatcattaatgcggtacatgc 455
>gb|BT016870.1| Zea mays clone Contig703 mRNA sequence Length = 911 Score = 272 bits (137), Expect = 1e-69 Identities = 289/341 (84%), Gaps = 1/341 (0%) Strand = Plus / Minus Query: 187 gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246 |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||| | Sbjct: 358 gttgaaaatgaggcagtgtagtatgggtacgctgatgttatgaacctctcatactcgtta 299 Query: 247 tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306 |||||||| || || |||||||||||||||| || ||| | |||| ||||| ||||| Sbjct: 298 tgcctgtaagggcgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctc 239 Query: 307 tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366 |||||||||||||||||||| |||||| | || ||||| |||||||||||||||| | | Sbjct: 238 tggtactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgttgag 179 Query: 367 tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426 |||| | | | ||||| | |||||| || | ||||| ||||| ||||||||||||||| Sbjct: 178 tataaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaac 119 Query: 427 tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486 || | || |||||||| | |||||||||||||||||||||||||||||| ||| || || Sbjct: 118 tggagttgcacatcatcagcaacatatggcttccagcttgttccagacca-ttcatagat 60 Query: 487 ctcaactgagtattccaagtcatcattgatgcggtacatgc 527 |||||| |||||||||| |||||| || ||||||||||||| Sbjct: 59 ctcaacagagtattccaggtcatcgttaatgcggtacatgc 19
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 109 bits (55), Expect = 9e-21 Identities = 82/92 (89%) Strand = Plus / Minus Query: 270 ctgctttgcaagagagacgccagngtatccaagcctttggtactcaactttgaactgnaa 329 |||||| | |||||||| |||| ||||||||||| |||||||||||||||||||| || Sbjct: 5921221 ctgcttagaaagagagagaccagtatatccaagcctctggtactcaactttgaactggaa 5921162 Query: 330 aactncataaacatccggaactttgaaggatg 361 |||| |||||||||| |||||||||||||||| Sbjct: 5921161 aactccataaacatctggaactttgaaggatg 5921130 Score = 105 bits (53), Expect = 1e-19 Identities = 91/103 (88%), Gaps = 1/103 (0%) Strand = Plus / Minus Query: 400 agaacgtaagggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttc 459 ||||| ||||||||||||||| ||||||||| ||||||||||| | |||||| |||||| Sbjct: 5921008 agaacataagggctcatcatgtaaaactgaacttgaacatcatcagcaacatacggcttc 5920949 Query: 460 cagcttgttccagaccatttcgtatatctcaactgagtattcc 502 ||||| || |||||||| |||||| |||||||| ||||||||| Sbjct: 5920948 cagctggtcccagacca-ttcgtagatctcaacagagtattcc 5920907 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 186 tgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtc 245 ||||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | Sbjct: 5921416 tgttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatt 5921357 Query: 246 atgcctgtatggccgtactggaatctgc 273 ||||||||| || || |||||||||||| Sbjct: 5921356 atgcctgtaagggcgcactggaatctgc 5921329 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 501 ccaagtcatcattgatgcggtacatgc 527 ||||||||||||||||||||||||||| Sbjct: 5920837 ccaagtcatcattgatgcggtacatgc 5920811
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 109 bits (55), Expect = 9e-21 Identities = 82/92 (89%) Strand = Plus / Minus Query: 270 ctgctttgcaagagagacgccagngtatccaagcctttggtactcaactttgaactgnaa 329 |||||| | |||||||| |||| ||||||||||| |||||||||||||||||||| || Sbjct: 63669 ctgcttagaaagagagagaccagtatatccaagcctctggtactcaactttgaactggaa 63610 Query: 330 aactncataaacatccggaactttgaaggatg 361 |||| |||||||||| |||||||||||||||| Sbjct: 63609 aactccataaacatctggaactttgaaggatg 63578 Score = 105 bits (53), Expect = 1e-19 Identities = 91/103 (88%), Gaps = 1/103 (0%) Strand = Plus / Minus Query: 400 agaacgtaagggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttc 459 ||||| ||||||||||||||| ||||||||| ||||||||||| | |||||| |||||| Sbjct: 63456 agaacataagggctcatcatgtaaaactgaacttgaacatcatcagcaacatacggcttc 63397 Query: 460 cagcttgttccagaccatttcgtatatctcaactgagtattcc 502 ||||| || |||||||| |||||| |||||||| ||||||||| Sbjct: 63396 cagctggtcccagacca-ttcgtagatctcaacagagtattcc 63355 Score = 71.9 bits (36), Expect = 2e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 186 tgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtc 245 ||||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | Sbjct: 63864 tgttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatt 63805 Query: 246 atgcctgtatggccgtactggaatctgc 273 ||||||||| || || |||||||||||| Sbjct: 63804 atgcctgtaagggcgcactggaatctgc 63777 Score = 54.0 bits (27), Expect = 5e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 501 ccaagtcatcattgatgcggtacatgc 527 ||||||||||||||||||||||||||| Sbjct: 63285 ccaagtcatcattgatgcggtacatgc 63259
>ref|NM_213093.1| Danio rerio zgc:66068 (zgc:66068), mRNA Length = 1845 Score = 46.1 bits (23), Expect = 0.12 Identities = 33/37 (89%) Strand = Plus / Minus Query: 313 tcaactttgaactgnaaaactncataaacatccggaa 349 |||||||||||||| |||||| |||| ||||| |||| Sbjct: 1194 tcaactttgaactgaaaaactccatatacatcaggaa 1158
>gb|BC056559.1| Danio rerio zgc:66068, mRNA (cDNA clone MGC:66068 IMAGE:6795586), complete cds Length = 1850 Score = 46.1 bits (23), Expect = 0.12 Identities = 33/37 (89%) Strand = Plus / Minus Query: 313 tcaactttgaactgnaaaactncataaacatccggaa 349 |||||||||||||| |||||| |||| ||||| |||| Sbjct: 1206 tcaactttgaactgaaaaactccatatacatcaggaa 1170
>gb|BC066475.1| Danio rerio zgc:66068, mRNA (cDNA clone MGC:77478 IMAGE:6524103), complete cds Length = 1845 Score = 46.1 bits (23), Expect = 0.12 Identities = 33/37 (89%) Strand = Plus / Minus Query: 313 tcaactttgaactgnaaaactncataaacatccggaa 349 |||||||||||||| |||||| |||| ||||| |||| Sbjct: 1194 tcaactttgaactgaaaaactccatatacatcaggaa 1158
>ref|NM_126066.3| Arabidopsis thaliana DGL1; dolichyl-diphosphooligosaccharide-protein glycotransferase AT5G66680 (DGL1) mRNA, complete cds Length = 1696 Score = 44.1 bits (22), Expect = 0.46 Identities = 47/56 (83%) Strand = Plus / Minus Query: 409 gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464 |||||||||||| ||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct: 1129 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1074
>gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, complete sequence Length = 194458 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 458 tccagcttgttccagaccattt 479 |||||||||||||||||||||| Sbjct: 77554 tccagcttgttccagaccattt 77575
>gb|AY150381.1| Arabidopsis thaliana putative dolichyl-di-phosphooligosaccharide glycotransferase (oligosaccharyltransferase) (At5g66680) mRNA, complete cds Length = 1345 Score = 44.1 bits (22), Expect = 0.46 Identities = 47/56 (83%) Strand = Plus / Minus Query: 409 gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464 |||||||||||| ||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct: 1043 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 988
>gb|AF428338.1|AF428338 Arabidopsis thaliana AT5g66680/MSN2_7 mRNA, complete cds Length = 1544 Score = 44.1 bits (22), Expect = 0.46 Identities = 47/56 (83%) Strand = Plus / Minus Query: 409 gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464 |||||||||||| ||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct: 1084 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1029
>emb|BX831000.1|CNS0A0SR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS47ZF06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1640 Score = 44.1 bits (22), Expect = 0.46 Identities = 47/56 (83%) Strand = Plus / Minus Query: 409 gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464 |||||||||||| ||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct: 1071 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1016
>emb|BX831189.1|CNS09YSI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS67ZA03 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1510 Score = 44.1 bits (22), Expect = 0.46 Identities = 47/56 (83%) Strand = Plus / Minus Query: 409 gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464 |||||||||||| ||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct: 1083 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1028
>gb|AY085807.1| Arabidopsis thaliana clone 18419 mRNA, complete sequence Length = 1540 Score = 44.1 bits (22), Expect = 0.46 Identities = 47/56 (83%) Strand = Plus / Minus Query: 409 gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464 |||||||||||| ||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct: 1082 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1027
>dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN2 Length = 62927 Score = 44.1 bits (22), Expect = 0.46 Identities = 47/56 (83%) Strand = Plus / Plus Query: 409 gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464 |||||||||||| ||||||||| ||| ||||| | | |||||| |||| |||||| Sbjct: 23822 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 23877
>emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chromosome 13, complete sequence Length = 174127 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 265 ggaatctgctttgcaagagaga 286 |||||||||||||||||||||| Sbjct: 140229 ggaatctgctttgcaagagaga 140250
>gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome 13, complete sequence Length = 182356 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 265 ggaatctgctttgcaagagaga 286 |||||||||||||||||||||| Sbjct: 94623 ggaatctgctttgcaagagaga 94602
>gb|AC093716.3| Homo sapiens BAC clone RP11-702L4 from 7, complete sequence Length = 77028 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 catgaaaaactgaatctgaa 436 |||||||||||||||||||| Sbjct: 69974 catgaaaaactgaatctgaa 69955 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,438,625 Number of Sequences: 3902068 Number of extensions: 3438625 Number of successful extensions: 49798 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49729 Number of HSP's gapped (non-prelim): 54 length of query: 527 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 504 effective length of database: 17,143,297,704 effective search space: 8640222042816 effective search space used: 8640222042816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)