ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_477102.1| Oryza sativa (japonica cultivar-group), mRNA 309 5e-81
2ref|XM_506221.1| PREDICTED Oryza sativa (japonica cultivar-group... 309 5e-81
3dbj|AK059111.1| Oryza sativa (japonica cultivar-group) cDNA clon... 309 5e-81
4dbj|AK099319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 1e-78
5gb|AY103792.1| Zea mays PCO149739 mRNA sequence 299 5e-78
6gb|BT017987.1| Zea mays clone EL01N0525H08.c mRNA sequence 291 1e-75
7gb|BT017639.1| Zea mays clone EL01N0438G02.c mRNA sequence 291 1e-75
8gb|BT016870.1| Zea mays clone Contig703 mRNA sequence 272 1e-69
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
10dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic D... 109 9e-21
11ref|NM_213093.1| Danio rerio zgc:66068 (zgc:66068), mRNA 46 0.12
12gb|BC056559.1| Danio rerio zgc:66068, mRNA (cDNA clone MGC:66068... 46 0.12
13gb|BC066475.1| Danio rerio zgc:66068, mRNA (cDNA clone MGC:77478... 46 0.12
14ref|NM_126066.3| Arabidopsis thaliana DGL1; dolichyl-diphosphool... 44 0.46
15gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, comp... 44 0.46
16gb|AY150381.1| Arabidopsis thaliana putative dolichyl-di-phospho... 44 0.46
17gb|AF428338.1|AF428338 Arabidopsis thaliana AT5g66680/MSN2_7 mRN... 44 0.46
18emb|BX831000.1|CNS0A0SR Arabidopsis thaliana Full-length cDNA Co... 44 0.46
19emb|BX831189.1|CNS09YSI Arabidopsis thaliana Full-length cDNA Co... 44 0.46
20gb|AY085807.1| Arabidopsis thaliana clone 18419 mRNA, complete s... 44 0.46
21dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.46
22emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chr... 44 0.46
23gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome ... 44 0.46
24gb|AC093716.3| Homo sapiens BAC clone RP11-702L4 from 7, complet... 40 7.1

>ref|XM_477102.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1570

 Score =  309 bits (156), Expect = 5e-81
 Identities = 340/401 (84%), Gaps = 3/401 (0%)
 Strand = Plus / Minus

                                                                        
Query: 127  atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186
            ||||| |||||||||||| |||||| || ||| |||  || |||||  ||||||||||||
Sbjct: 1371 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1314

                                                                        
Query: 187  gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246
            |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | |
Sbjct: 1313 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1254

                                                                        
Query: 247  tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306
            |||||||| || || |||||||||||||| | ||||||||  ||||  ||||||||||| 
Sbjct: 1253 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1194

                                                                        
Query: 307  tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366
            |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | ||
Sbjct: 1193 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1134

                                                                        
Query: 367  tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426
             ||| | |  | ||||| || ||||   |  | ||||| ||||||||||||||| |||||
Sbjct: 1133 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1074

                                                                        
Query: 427  tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486
            ||||  ||||||||||| | |||||| ||||||||||| || |||||||| |||||| ||
Sbjct: 1073 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1015

                                                     
Query: 487  ctcaactgagtattccaagtcatcattgatgcggtacatgc 527
            |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1014 ctcaacagagtattccaagtcatcattgatgcggtacatgc 974



to top

>ref|XM_506221.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_A05.4 mRNA
          Length = 1648

 Score =  309 bits (156), Expect = 5e-81
 Identities = 340/401 (84%), Gaps = 3/401 (0%)
 Strand = Plus / Minus

                                                                        
Query: 127  atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186
            ||||| |||||||||||| |||||| || ||| |||  || |||||  ||||||||||||
Sbjct: 1378 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1321

                                                                        
Query: 187  gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246
            |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | |
Sbjct: 1320 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1261

                                                                        
Query: 247  tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306
            |||||||| || || |||||||||||||| | ||||||||  ||||  ||||||||||| 
Sbjct: 1260 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1201

                                                                        
Query: 307  tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366
            |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | ||
Sbjct: 1200 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1141

                                                                        
Query: 367  tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426
             ||| | |  | ||||| || ||||   |  | ||||| ||||||||||||||| |||||
Sbjct: 1140 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1081

                                                                        
Query: 427  tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486
            ||||  ||||||||||| | |||||| ||||||||||| || |||||||| |||||| ||
Sbjct: 1080 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1022

                                                     
Query: 487  ctcaactgagtattccaagtcatcattgatgcggtacatgc 527
            |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1021 ctcaacagagtattccaagtcatcattgatgcggtacatgc 981



to top

>dbj|AK059111.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E02, full
            insert sequence
          Length = 1648

 Score =  309 bits (156), Expect = 5e-81
 Identities = 340/401 (84%), Gaps = 3/401 (0%)
 Strand = Plus / Minus

                                                                        
Query: 127  atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186
            ||||| |||||||||||| |||||| || ||| |||  || |||||  ||||||||||||
Sbjct: 1378 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1321

                                                                        
Query: 187  gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246
            |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | |
Sbjct: 1320 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1261

                                                                        
Query: 247  tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306
            |||||||| || || |||||||||||||| | ||||||||  ||||  ||||||||||| 
Sbjct: 1260 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1201

                                                                        
Query: 307  tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366
            |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | ||
Sbjct: 1200 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1141

                                                                        
Query: 367  tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426
             ||| | |  | ||||| || ||||   |  | ||||| ||||||||||||||| |||||
Sbjct: 1140 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1081

                                                                        
Query: 427  tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486
            ||||  ||||||||||| | |||||| ||||||||||| || |||||||| |||||| ||
Sbjct: 1080 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1022

                                                     
Query: 487  ctcaactgagtattccaagtcatcattgatgcggtacatgc 527
            |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1021 ctcaacagagtattccaagtcatcattgatgcggtacatgc 981



to top

>dbj|AK099319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033003F07, full
            insert sequence
          Length = 1570

 Score =  301 bits (152), Expect = 1e-78
 Identities = 339/401 (84%), Gaps = 3/401 (0%)
 Strand = Plus / Minus

                                                                        
Query: 127  atgagctatctatttgtgatacaggnacgcaactgancaatatgaancaaggctcccatt 186
            ||||| |||||||||||| |||||| || ||| |||  || |||||  ||||||||||||
Sbjct: 1371 atgagttatctatttgtggtacaggtacacaaatgag-aagatgaag-aaggctcccatt 1314

                                                                        
Query: 187  gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246
            |||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | |
Sbjct: 1313 gttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatta 1254

                                                                        
Query: 247  tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306
            |||||||| || || |||||||||||||| | ||||||||  ||||  ||||||||||| 
Sbjct: 1253 tgcctgtaagggcgcactggaatctgcttagaaagagagagaccagtatatccaagcctc 1194

                                                                        
Query: 307  tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366
            |||||||||||||||||||| |||||| |||||||||| |||||||||||||||| | ||
Sbjct: 1193 tggtactcaactttgaactggaaaactccataaacatctggaactttgaaggatgttgaa 1134

                                                                        
Query: 367  tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426
             ||| | |  | ||||| || ||||   |  | ||||| ||||||||||||||| |||||
Sbjct: 1133 aatacacccttcttgtcagtcgacagtgtcttcagaacataagggctcatcatgtaaaac 1074

                                                                        
Query: 427  tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486
            ||||  ||||||||||| | |||||| ||||||||||| || |||||||| |||||| ||
Sbjct: 1073 tgaacttgaacatcatcagcaacatacggcttccagctggtcccagacca-ttcgtagat 1015

                                                     
Query: 487  ctcaactgagtattccaagtcatcattgatgcggtacatgc 527
            |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 1014 ctcaacagagtattccaagtcatcattgatgcggtgcatgc 974



to top

>gb|AY103792.1| Zea mays PCO149739 mRNA sequence
          Length = 2093

 Score =  299 bits (151), Expect = 5e-78
 Identities = 297/347 (85%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                        
Query: 181  cccattgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatac 240
            ||||||||||||||||||||||  ||||||||  ||||||| |||||||| |||||||||
Sbjct: 1641 cccattgttgaaaatgaggcagtgtagtatgggtacgctgatgttatgaatctctcatac 1582

                                                                        
Query: 241  tcgtcatgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatcca 300
            || | ||| ||||| || ||||||||||||||||||| || ||| |  ||||  ||||| 
Sbjct: 1581 tcattatgtctgtaaggacgtactggaatctgctttgtaaaagacagaccagtatatccc 1522

                                                                        
Query: 301  agcctttggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggat 360
            || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
Sbjct: 1521 agtctttggtactcaactttgaactggaaaactccataaacatctggaactttgaaggtt 1462

                                                                        
Query: 361  gctnaatatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatg 420
            | | |||| | | |  | ||||| || |||||| || | |||||||||||||||||||||
Sbjct: 1461 gttgaatacaaacccttgttgtcagtcgacatagttttcagaacgtaagggctcatcatg 1402

                                                                        
Query: 421  aaaaactgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttc 480
            ||||| |||| ||| |||||||| | |||||| ||||||||||||||||| ||||| |||
Sbjct: 1401 aaaaattgaagctgcacatcatcagcaacatacggcttccagcttgttccggacca-ttc 1343

                                                           
Query: 481  gtatatctcaactgagtattccaagtcatcattgatgcggtacatgc 527
             || |||||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 1342 atagatctcaacagagtattccaggtcatcattaatgcggtacatgc 1296



to top

>gb|BT017987.1| Zea mays clone EL01N0525H08.c mRNA sequence
          Length = 1602

 Score =  291 bits (147), Expect = 1e-75
 Identities = 296/347 (85%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                        
Query: 181  cccattgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatac 240
            |||||||||||||||||||| |  ||||||||  ||||||| |||||||| |||||||||
Sbjct: 1286 cccattgttgaaaatgaggcggtgtagtatgggtacgctgatgttatgaatctctcatac 1227

                                                                        
Query: 241  tcgtcatgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatcca 300
            || | ||| ||||| || ||||||||||||||||||| || ||| |  ||||  ||||| 
Sbjct: 1226 tcattatgtctgtaaggacgtactggaatctgctttgtaaaagacagaccagtatatccc 1167

                                                                        
Query: 301  agcctttggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggat 360
            || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
Sbjct: 1166 agtctttggtactcaactttgaactggaaaactccataaacatctggaactttgaaggtt 1107

                                                                        
Query: 361  gctnaatatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatg 420
            | | |||| | | |  | ||||| || |||||| || | |||||||||||||||||||||
Sbjct: 1106 gttgaatacaaacccttgttgtcagtcgacatagttttcagaacgtaagggctcatcatg 1047

                                                                        
Query: 421  aaaaactgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttc 480
            ||||| |||| ||| |||||||| | |||||| ||||||||||||||||| ||||| |||
Sbjct: 1046 aaaaattgaagctgcacatcatcagcaacatacggcttccagcttgttccggacca-ttc 988

                                                           
Query: 481  gtatatctcaactgagtattccaagtcatcattgatgcggtacatgc 527
             || |||||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 987  atagatctcaacagagtattccaggtcatcattaatgcggtacatgc 941



to top

>gb|BT017639.1| Zea mays clone EL01N0438G02.c mRNA sequence
          Length = 1151

 Score =  291 bits (147), Expect = 1e-75
 Identities = 296/347 (85%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 181 cccattgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatac 240
           |||||||||||||||||||| |  ||||||||  ||||||| |||||||| |||||||||
Sbjct: 800 cccattgttgaaaatgaggcggtgtagtatgggtacgctgatgttatgaatctctcatac 741

                                                                       
Query: 241 tcgtcatgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatcca 300
           || | ||| ||||| || ||||||||||||||||||| || ||| |  ||||  ||||| 
Sbjct: 740 tcattatgtctgtaaggacgtactggaatctgctttgtaaaagacagaccagtatatccc 681

                                                                       
Query: 301 agcctttggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggat 360
           || ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| |
Sbjct: 680 agtctttggtactcaactttgaactggaaaactccataaacatctggaactttgaaggtt 621

                                                                       
Query: 361 gctnaatatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatg 420
           | | |||| | | |  | ||||| || |||||| || | |||||||||||||||||||||
Sbjct: 620 gttgaatacaaacccttgttgtcagtcgacatagttttcagaacgtaagggctcatcatg 561

                                                                       
Query: 421 aaaaactgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttc 480
           ||||| |||| ||| |||||||| | |||||| ||||||||||||||||| ||||| |||
Sbjct: 560 aaaaattgaagctgcacatcatcagcaacatacggcttccagcttgttccggacca-ttc 502

                                                          
Query: 481 gtatatctcaactgagtattccaagtcatcattgatgcggtacatgc 527
            || |||||||| |||||||||| ||||||||| |||||||||||||
Sbjct: 501 atagatctcaacagagtattccaggtcatcattaatgcggtacatgc 455



to top

>gb|BT016870.1| Zea mays clone Contig703 mRNA sequence
          Length = 911

 Score =  272 bits (137), Expect = 1e-69
 Identities = 289/341 (84%), Gaps = 1/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 187 gttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtca 246
           ||||||||||||||||  ||||||||  ||||||| |||||||||||||||||||||| |
Sbjct: 358 gttgaaaatgaggcagtgtagtatgggtacgctgatgttatgaacctctcatactcgtta 299

                                                                       
Query: 247 tgcctgtatggccgtactggaatctgctttgcaagagagacgccagngtatccaagcctt 306
           |||||||| || || |||||||||||||||| || ||| |  ||||  ||||| ||||| 
Sbjct: 298 tgcctgtaagggcgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctc 239

                                                                       
Query: 307 tggtactcaactttgaactgnaaaactncataaacatccggaactttgaaggatgctnaa 366
           |||||||||||||||||||| |||||| | || ||||| |||||||||||||||| | | 
Sbjct: 238 tggtactcaactttgaactggaaaactccgtagacatcaggaactttgaaggatgttgag 179

                                                                       
Query: 367 tatanagcagttttgtcggttgacatatttntaagaacgtaagggctcatcatgaaaaac 426
           |||| | |  | |||||  | |||||| || | ||||| ||||| |||||||||||||||
Sbjct: 178 tataaacccttgttgtcattcgacatagttttcagaacataaggactcatcatgaaaaac 119

                                                                       
Query: 427 tgaatctgaacatcatcngnaacatatggcttccagcttgttccagaccatttcgtatat 486
           || |  || |||||||| | |||||||||||||||||||||||||||||| ||| || ||
Sbjct: 118 tggagttgcacatcatcagcaacatatggcttccagcttgttccagacca-ttcatagat 60

                                                    
Query: 487 ctcaactgagtattccaagtcatcattgatgcggtacatgc 527
           |||||| |||||||||| |||||| || |||||||||||||
Sbjct: 59  ctcaacagagtattccaggtcatcgttaatgcggtacatgc 19



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  109 bits (55), Expect = 9e-21
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                           
Query: 270     ctgctttgcaagagagacgccagngtatccaagcctttggtactcaactttgaactgnaa 329
               |||||| | ||||||||  ||||  ||||||||||| |||||||||||||||||||| ||
Sbjct: 5921221 ctgcttagaaagagagagaccagtatatccaagcctctggtactcaactttgaactggaa 5921162

                                               
Query: 330     aactncataaacatccggaactttgaaggatg 361
               |||| |||||||||| ||||||||||||||||
Sbjct: 5921161 aactccataaacatctggaactttgaaggatg 5921130



 Score =  105 bits (53), Expect = 1e-19
 Identities = 91/103 (88%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                           
Query: 400     agaacgtaagggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttc 459
               ||||| ||||||||||||||| |||||||||  ||||||||||| | |||||| ||||||
Sbjct: 5921008 agaacataagggctcatcatgtaaaactgaacttgaacatcatcagcaacatacggcttc 5920949

                                                          
Query: 460     cagcttgttccagaccatttcgtatatctcaactgagtattcc 502
               ||||| || |||||||| |||||| |||||||| |||||||||
Sbjct: 5920948 cagctggtcccagacca-ttcgtagatctcaacagagtattcc 5920907



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                           
Query: 186     tgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtc 245
               ||||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | 
Sbjct: 5921416 tgttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatt 5921357

                                           
Query: 246     atgcctgtatggccgtactggaatctgc 273
               ||||||||| || || ||||||||||||
Sbjct: 5921356 atgcctgtaagggcgcactggaatctgc 5921329



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                          
Query: 501     ccaagtcatcattgatgcggtacatgc 527
               |||||||||||||||||||||||||||
Sbjct: 5920837 ccaagtcatcattgatgcggtacatgc 5920811



to top

>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_A05
          Length = 120823

 Score =  109 bits (55), Expect = 9e-21
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                         
Query: 270   ctgctttgcaagagagacgccagngtatccaagcctttggtactcaactttgaactgnaa 329
             |||||| | ||||||||  ||||  ||||||||||| |||||||||||||||||||| ||
Sbjct: 63669 ctgcttagaaagagagagaccagtatatccaagcctctggtactcaactttgaactggaa 63610

                                             
Query: 330   aactncataaacatccggaactttgaaggatg 361
             |||| |||||||||| ||||||||||||||||
Sbjct: 63609 aactccataaacatctggaactttgaaggatg 63578



 Score =  105 bits (53), Expect = 1e-19
 Identities = 91/103 (88%), Gaps = 1/103 (0%)
 Strand = Plus / Minus

                                                                         
Query: 400   agaacgtaagggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttc 459
             ||||| ||||||||||||||| |||||||||  ||||||||||| | |||||| ||||||
Sbjct: 63456 agaacataagggctcatcatgtaaaactgaacttgaacatcatcagcaacatacggcttc 63397

                                                        
Query: 460   cagcttgttccagaccatttcgtatatctcaactgagtattcc 502
             ||||| || |||||||| |||||| |||||||| |||||||||
Sbjct: 63396 cagctggtcccagacca-ttcgtagatctcaacagagtattcc 63355



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                         
Query: 186   tgttgaaaatgaggcagcatagtatggaaacgctgaagttatgaacctctcatactcgtc 245
             ||||||||| || ||||||||||| ||| | || ||||||||||| || |||||||| | 
Sbjct: 63864 tgttgaaaacgacgcagcatagtacggatatgccgaagttatgaatctttcatactcatt 63805

                                         
Query: 246   atgcctgtatggccgtactggaatctgc 273
             ||||||||| || || ||||||||||||
Sbjct: 63804 atgcctgtaagggcgcactggaatctgc 63777



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 501   ccaagtcatcattgatgcggtacatgc 527
             |||||||||||||||||||||||||||
Sbjct: 63285 ccaagtcatcattgatgcggtacatgc 63259



to top

>ref|NM_213093.1| Danio rerio zgc:66068 (zgc:66068), mRNA
          Length = 1845

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 313  tcaactttgaactgnaaaactncataaacatccggaa 349
            |||||||||||||| |||||| |||| ||||| ||||
Sbjct: 1194 tcaactttgaactgaaaaactccatatacatcaggaa 1158



to top

>gb|BC056559.1| Danio rerio zgc:66068, mRNA (cDNA clone MGC:66068 IMAGE:6795586),
            complete cds
          Length = 1850

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 313  tcaactttgaactgnaaaactncataaacatccggaa 349
            |||||||||||||| |||||| |||| ||||| ||||
Sbjct: 1206 tcaactttgaactgaaaaactccatatacatcaggaa 1170



to top

>gb|BC066475.1| Danio rerio zgc:66068, mRNA (cDNA clone MGC:77478 IMAGE:6524103),
            complete cds
          Length = 1845

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 313  tcaactttgaactgnaaaactncataaacatccggaa 349
            |||||||||||||| |||||| |||| ||||| ||||
Sbjct: 1194 tcaactttgaactgaaaaactccatatacatcaggaa 1158



to top

>ref|NM_126066.3| Arabidopsis thaliana DGL1; dolichyl-diphosphooligosaccharide-protein
            glycotransferase AT5G66680 (DGL1) mRNA, complete cds
          Length = 1696

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 409  gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464
            |||||||||||| ||||||||| ||| ||||| |  | |||||| |||| ||||||
Sbjct: 1129 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1074



to top

>gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, complete sequence
          Length = 194458

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 458   tccagcttgttccagaccattt 479
             ||||||||||||||||||||||
Sbjct: 77554 tccagcttgttccagaccattt 77575



to top

>gb|AY150381.1| Arabidopsis thaliana putative dolichyl-di-phosphooligosaccharide
            glycotransferase (oligosaccharyltransferase) (At5g66680)
            mRNA, complete cds
          Length = 1345

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 409  gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464
            |||||||||||| ||||||||| ||| ||||| |  | |||||| |||| ||||||
Sbjct: 1043 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 988



to top

>gb|AF428338.1|AF428338 Arabidopsis thaliana AT5g66680/MSN2_7 mRNA, complete cds
          Length = 1544

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 409  gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464
            |||||||||||| ||||||||| ||| ||||| |  | |||||| |||| ||||||
Sbjct: 1084 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1029



to top

>emb|BX831000.1|CNS0A0SR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS47ZF06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1640

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 409  gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464
            |||||||||||| ||||||||| ||| ||||| |  | |||||| |||| ||||||
Sbjct: 1071 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1016



to top

>emb|BX831189.1|CNS09YSI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS67ZA03 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1510

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 409  gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464
            |||||||||||| ||||||||| ||| ||||| |  | |||||| |||| ||||||
Sbjct: 1083 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1028



to top

>gb|AY085807.1| Arabidopsis thaliana clone 18419 mRNA, complete sequence
          Length = 1540

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 409  gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464
            |||||||||||| ||||||||| ||| ||||| |  | |||||| |||| ||||||
Sbjct: 1082 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 1027



to top

>dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN2
          Length = 62927

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 409   gggctcatcatgaaaaactgaatctgaacatcatcngnaacatatggcttccagct 464
             |||||||||||| ||||||||| ||| ||||| |  | |||||| |||| ||||||
Sbjct: 23822 gggctcatcatgtaaaactgaacctgcacatcgttagcaacatacggctcccagct 23877



to top

>emb|CT030660.14| Mouse DNA sequence from clone RP23-455F4 on chromosome 13, complete
              sequence
          Length = 174127

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 265    ggaatctgctttgcaagagaga 286
              ||||||||||||||||||||||
Sbjct: 140229 ggaatctgctttgcaagagaga 140250



to top

>gb|AC154793.2| Mus musculus BAC clone RP23-88B6 from chromosome 13, complete sequence
          Length = 182356

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 265   ggaatctgctttgcaagagaga 286
             ||||||||||||||||||||||
Sbjct: 94623 ggaatctgctttgcaagagaga 94602



to top

>gb|AC093716.3| Homo sapiens BAC clone RP11-702L4 from 7, complete sequence
          Length = 77028

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   catgaaaaactgaatctgaa 436
             ||||||||||||||||||||
Sbjct: 69974 catgaaaaactgaatctgaa 69955


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,438,625
Number of Sequences: 3902068
Number of extensions: 3438625
Number of successful extensions: 49798
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49729
Number of HSP's gapped (non-prelim): 54
length of query: 527
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 504
effective length of database: 17,143,297,704
effective search space: 8640222042816
effective search space used: 8640222042816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top