ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8h19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL160282.18| Human DNA sequence from clone RP11-315I20 on ch... 44 0.18
2gb|CP000088.1| Thermobifida fusca YX, complete genome 42 0.73
3gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q2... 40 2.9
4gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, com... 40 2.9
5gb|AC023200.6| Homo sapiens chromosome 8, clone RP11-48D4, compl... 40 2.9

>emb|AL160282.18| Human DNA sequence from clone RP11-315I20 on chromosome 1q12.1-21.3,
              complete sequence
          Length = 191594

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 27     aaagcagagcagcagggtttca 48
              ||||||||||||||||||||||
Sbjct: 116658 aaagcagagcagcagggtttca 116679



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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 0.73
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    ccaaccaaagcagagcagcag 41
             |||||||||||||||||||||
Sbjct: 78231 ccaaccaaagcagagcagcag 78211



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>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     tatcatgatcatacataaaa 85
              ||||||||||||||||||||
Sbjct: 117489 tatcatgatcatacataaaa 117508



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>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence
          Length = 145544

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 66   tatcatgatcatacataaaa 85
            ||||||||||||||||||||
Sbjct: 2266 tatcatgatcatacataaaa 2247



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>gb|AC023200.6| Homo sapiens chromosome 8, clone RP11-48D4, complete sequence
          Length = 159563

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    tatcatgatcatacataaaa 85
             ||||||||||||||||||||
Sbjct: 95204 tatcatgatcatacataaaa 95185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,480,212
Number of Sequences: 3902068
Number of extensions: 1480212
Number of successful extensions: 99981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99966
Number of HSP's gapped (non-prelim): 15
length of query: 226
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 204
effective length of database: 17,147,199,772
effective search space: 3498028753488
effective search space used: 3498028753488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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