ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags8h11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197152.1| Oryza sativa (japonica cultivar-group) putative microtubule-severing protein subunit (OSJNBa0041P03.15), mRNA Length = 2601 Score = 75.8 bits (38), Expect = 1e-10 Identities = 139/172 (80%), Gaps = 3/172 (1%) Strand = Plus / Minus Query: 408 gtctacaccgactggtggagcagacgacaaagatgaaaatattgatgcactgaagctttt 467 ||||||||| |||||||||| ||| |||| || |||| |||||| | || |||||||| Sbjct: 2436 gtctacaccaactggtggagtagatgacacagctgaagatattgtagaaccaaagctttt 2377 Query: 468 cacaagcttaaggatcgtcgccaaggcaaagttcaaatgtctatcatatccac---tttc 524 |||||||||||||||| || ||||||||| |||| || || ||||| | | |||| Sbjct: 2376 cacaagcttaaggatcatctccaaggcaactttcaggtgcctgtcatagctgcttttttc 2317 Query: 525 aagaagattggcggcaagaggtaaaacagaagtgcaaatgtctagagtgata 576 ||||| | ||| |||||||||||| ||| |||| ||||| ||||| |||||| Sbjct: 2316 aagaacactggaggcaagaggtaagacacaagtacaaatatctagtgtgata 2265 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 262 aagatatcctgaagaaagaggctcagctcccgtgctgatctcccaaccttgcctt 316 ||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| Sbjct: 2582 aagatatcctgaagaaagaggcttagctcctgtgcagatcttccaacctcgcctt 2528
>dbj|AK111538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013038I11, full insert sequence Length = 2851 Score = 75.8 bits (38), Expect = 1e-10 Identities = 139/172 (80%), Gaps = 3/172 (1%) Strand = Plus / Minus Query: 408 gtctacaccgactggtggagcagacgacaaagatgaaaatattgatgcactgaagctttt 467 ||||||||| |||||||||| ||| |||| || |||| |||||| | || |||||||| Sbjct: 2499 gtctacaccaactggtggagtagatgacacagctgaagatattgtagaaccaaagctttt 2440 Query: 468 cacaagcttaaggatcgtcgccaaggcaaagttcaaatgtctatcatatccac---tttc 524 |||||||||||||||| || ||||||||| |||| || || ||||| | | |||| Sbjct: 2439 cacaagcttaaggatcatctccaaggcaactttcaggtgcctgtcatagctgcttttttc 2380 Query: 525 aagaagattggcggcaagaggtaaaacagaagtgcaaatgtctagagtgata 576 ||||| | ||| |||||||||||| ||| |||| ||||| ||||| |||||| Sbjct: 2379 aagaacactggaggcaagaggtaagacacaagtacaaatatctagtgtgata 2328 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 262 aagatatcctgaagaaagaggctcagctcccgtgctgatctcccaaccttgcctt 316 ||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| Sbjct: 2645 aagatatcctgaagaaagaggcttagctcctgtgcagatcttccaacctcgcctt 2591
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Minus Query: 408 gtctacaccgactggtggagcagacgacaaagatgaaaatattgatgcactgaagctttt 467 ||||||||| |||||||||| ||| |||| || |||| |||||| | || |||||||| Sbjct: 66986 gtctacaccaactggtggagtagatgacacagctgaagatattgtagaaccaaagctttt 66927 Query: 468 cacaagcttaaggatcgtcgccaaggcaa 496 |||||||||||||||| || ||||||||| Sbjct: 66926 cacaagcttaaggatcatctccaaggcaa 66898 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 262 aagatatcctgaagaaagaggctcagctcccgtgctgatctcccaaccttgcctt 316 ||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| Sbjct: 67347 aagatatcctgaagaaagaggcttagctcctgtgcagatcttccaacctcgcctt 67293 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/56 (85%) Strand = Plus / Minus Query: 521 tttcaagaagattggcggcaagaggtaaaacagaagtgcaaatgtctagagtgata 576 ||||||||| | ||| |||||||||||| ||| |||| ||||| ||||| |||||| Sbjct: 66801 tttcaagaacactggaggcaagaggtaagacacaagtacaaatatctagtgtgata 66746
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 408 gtctacaccgactggtggagcagacgacaaagatgaaaatattgatgcactgaagctttt 467 ||||||||| |||||||||| ||| |||| || |||| |||||| | || |||||||| Sbjct: 18283784 gtctacaccaactggtggagtagatgacacagctgaagatattgtagaaccaaagctttt 18283843 Query: 468 cacaagcttaaggatcgtcgccaaggcaa 496 |||||||||||||||| || ||||||||| Sbjct: 18283844 cacaagcttaaggatcatctccaaggcaa 18283872 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 262 aagatatcctgaagaaagaggctcagctcccgtgctgatctcccaaccttgcctt 316 ||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| Sbjct: 18283423 aagatatcctgaagaaagaggcttagctcctgtgcagatcttccaacctcgcctt 18283477 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/56 (85%) Strand = Plus / Plus Query: 521 tttcaagaagattggcggcaagaggtaaaacagaagtgcaaatgtctagagtgata 576 ||||||||| | ||| |||||||||||| ||| |||| ||||| ||||| |||||| Sbjct: 18283969 tttcaagaacactggaggcaagaggtaagacacaagtacaaatatctagtgtgata 18284024
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 73.8 bits (37), Expect = 6e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 408 gtctacaccgactggtggagcagacgacaaagatgaaaatattgatgcactgaagctttt 467 ||||||||| |||||||||| ||| |||| || |||| |||||| | || |||||||| Sbjct: 18293437 gtctacaccaactggtggagtagatgacacagctgaagatattgtagaaccaaagctttt 18293496 Query: 468 cacaagcttaaggatcgtcgccaaggcaa 496 |||||||||||||||| || ||||||||| Sbjct: 18293497 cacaagcttaaggatcatctccaaggcaa 18293525 Score = 69.9 bits (35), Expect = 9e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 262 aagatatcctgaagaaagaggctcagctcccgtgctgatctcccaaccttgcctt 316 ||||||||||||||||||||||| |||||| |||| ||||| ||||||| ||||| Sbjct: 18293076 aagatatcctgaagaaagaggcttagctcctgtgcagatcttccaacctcgcctt 18293130 Score = 48.1 bits (24), Expect = 0.033 Identities = 48/56 (85%) Strand = Plus / Plus Query: 521 tttcaagaagattggcggcaagaggtaaaacagaagtgcaaatgtctagagtgata 576 ||||||||| | ||| |||||||||||| ||| |||| ||||| ||||| |||||| Sbjct: 18293622 tttcaagaacactggaggcaagaggtaagacacaagtacaaatatctagtgtgata 18293677
>emb|AL450423.9| Human DNA sequence from clone RP11-190J12 on chromosome 13, complete sequence Length = 116969 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 332 agatgagatttgcatttatcttttcca 358 ||||||||||||||||| ||||||||| Sbjct: 21099 agatgagatttgcatttttcttttcca 21125
>gb|AY795482.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 3 (DNAJC3) gene, complete cds Length = 117695 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 tttgcatttatcttttccagct 361 |||||||||||||||||||||| Sbjct: 89010 tttgcatttatcttttccagct 89031
>emb|AL138955.14| Human DNA sequence from clone RP11-10E18 on chromosome 13 Contains the 5' UTR of the gene for novel zinc-finger protein (DZIP1, KIAA0996), the 3' end of the DNAJC3 gene for DnaJ (Hsp40) homolog, subfamily C, member 3, a pseudogene similar to part of NADH dehydrogenase 5 (MTND5) , a novel cytochrome B pseudogene, a NADH dehydrogenase 6 (MTND6) pseudogene and 4 CpG islands, complete sequence Length = 149704 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 tttgcatttatcttttccagct 361 |||||||||||||||||||||| Sbjct: 120760 tttgcatttatcttttccagct 120781
>emb|AL805957.12| Mouse DNA sequence from clone RP23-259P7 on chromosome 4, complete sequence Length = 197911 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 212 gaaagaaaagagggtgaatttt 233 |||||||||||||||||||||| Sbjct: 91837 gaaagaaaagagggtgaatttt 91858
>gb|AC024859.1| Caenorhabditis elegans cosmid Y71H2AM, complete sequence Length = 143786 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 gaaaaagagcaaaatgtcaag 26 ||||||||||||||||||||| Sbjct: 73477 gaaaaagagcaaaatgtcaag 73457
>emb|AL031657.5|HS28F12 Human DNA sequence from clone RP1-28F12 on chromosome 20q11.22-12 Contains the 5' end of the PPP1R16B gene for protein phosphatase 1 regulatory (inhibitory) subunit 16B and a CpG island, complete sequence Length = 120630 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 gatttgcatttatcttttcca 358 ||||||||||||||||||||| Sbjct: 99733 gatttgcatttatcttttcca 99753
>gb|AC159911.7| Mus musculus 10 BAC RP23-465M5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203420 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 acaaagatgaaaatattgatg 454 ||||||||||||||||||||| Sbjct: 164310 acaaagatgaaaatattgatg 164330
>ref|NM_065212.3| Caenorhabditis elegans Y71H2AM.17 (Y71H2AM.17) mRNA, complete cds Length = 1237 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 gaaaaagagcaaaatgtcaag 26 ||||||||||||||||||||| Sbjct: 862 gaaaaagagcaaaatgtcaag 882
>gb|AC155634.1| Mus musculus BAC clone RP24-468P7 from 12, complete sequence Length = 174997 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 445 aatattgatgcactgaagcttttca 469 |||||| |||||||||||||||||| Sbjct: 46407 aatattaatgcactgaagcttttca 46431
>gb|BC019490.1| Mus musculus G patch domain containing 4, mRNA (cDNA clone MGC:28443 IMAGE:4039649), complete cds Length = 1511 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 300 cagcagctgctcttcagcaa 281
>gb|BC002265.1| Mus musculus G patch domain containing 4, mRNA (cDNA clone IMAGE:3495364) Length = 720 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 154 cagcagctgctcttcagcaa 135
>gb|AC157936.5| Mus musculus chromosome 5, clone RP24-246K15, complete sequence Length = 178000 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 atttatcttttccagctctt 364 |||||||||||||||||||| Sbjct: 123588 atttatcttttccagctctt 123569
>gb|AC110387.6| Rattus norvegicus 1 BAC CH230-209H8 (Children's Hospital Oakland Research Institute) complete sequence Length = 226439 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 206 atgtacgaaagaaaagagggtgaatttt 233 ||||| ||||||||||||| |||||||| Sbjct: 103216 atgtaagaaagaaaagaggctgaatttt 103243
>ref|XM_972744.1| PREDICTED: Mus musculus A kinase (PRKA) anchor protein 4 (Akap4), mRNA Length = 2591 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gatttgcatttatcttttcc 357 |||||||||||||||||||| Sbjct: 1292 gatttgcatttatcttttcc 1273
>gb|AC137525.3| Mus musculus BAC clone RP23-68H24 from chromosome 3, complete sequence Length = 203159 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 55902 cagcagctgctcttcagcaa 55883
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 aaagatgaaaatattgatgc 455 |||||||||||||||||||| Sbjct: 1418677 aaagatgaaaatattgatgc 1418696
>emb|BX901973.12| Zebrafish DNA sequence from clone DKEY-26L17 in linkage group 3, complete sequence Length = 226081 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 tgaagatatcctgaagaaag 279 |||||||||||||||||||| Sbjct: 17284 tgaagatatcctgaagaaag 17265
>ref|XM_857960.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38, transcript variant 7 (LOC479669), mRNA Length = 3773 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcagctgctcttcagcaagt 79 |||||||||||||||||||| Sbjct: 3639 gcagctgctcttcagcaagt 3620
>ref|XM_857935.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38, transcript variant 6 (LOC479669), mRNA Length = 3818 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcagctgctcttcagcaagt 79 |||||||||||||||||||| Sbjct: 3684 gcagctgctcttcagcaagt 3665
>ref|XM_857909.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38, transcript variant 5 (LOC479669), mRNA Length = 3800 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcagctgctcttcagcaagt 79 |||||||||||||||||||| Sbjct: 3666 gcagctgctcttcagcaagt 3647
>ref|XM_857885.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38, transcript variant 4 (LOC479669), mRNA Length = 3794 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcagctgctcttcagcaagt 79 |||||||||||||||||||| Sbjct: 3660 gcagctgctcttcagcaagt 3641
>ref|XM_857865.1| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38, transcript variant 3 (LOC479669), mRNA Length = 3680 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcagctgctcttcagcaagt 79 |||||||||||||||||||| Sbjct: 3546 gcagctgctcttcagcaagt 3527
>ref|XM_536800.2| PREDICTED: Canis familiaris similar to DEAH (Asp-Glu-Ala-His) box polypeptide 38, transcript variant 1 (LOC479669), mRNA Length = 3778 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gcagctgctcttcagcaagt 79 |||||||||||||||||||| Sbjct: 3639 gcagctgctcttcagcaagt 3620
>emb|AL445235.30| Human DNA sequence from clone RP1-65J11 on chromosome 1 Contains the 5' end of the PUM1 gene for pumilio homolog 1 (Drosophila), the SDC3 gene for syndecan 3 (N-syndecan), two novel genes and a CpG island, complete sequence Length = 167478 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 ctcccaaccttgccttctctcctt 324 |||||| ||||||||||||||||| Sbjct: 48793 ctcccacccttgccttctctcctt 48770
>gb|AF448786.1|AF448784S3 Mus musculus A kinase anchoring protein 4 (Akap4) gene, exons 4 through 7, and complete cds, alternatively spliced Length = 6864 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gatttgcatttatcttttcc 357 |||||||||||||||||||| Sbjct: 5130 gatttgcatttatcttttcc 5111
>gb|AC072041.21| Homo sapiens 3 BAC RP11-450A18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111809 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 atttgcatttatcttttcca 358 |||||||||||||||||||| Sbjct: 93586 atttgcatttatcttttcca 93605
>ref|NM_025663.2| Mus musculus G patch domain containing 4 (Gpatc4), mRNA Length = 1511 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 300 cagcagctgctcttcagcaa 281
>dbj|AK169111.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920080F14 product:hypothetical D111/G-patch domain/G-patch domain profile containing protein, full insert sequence Length = 1621 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 172 cagcagctgctcttcagcaa 153
>dbj|AK018306.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:6530401D06 product:hypothetical D111/G-patch domain containing protein, full insert sequence Length = 1121 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 157 cagcagctgctcttcagcaa 138
>dbj|AK011617.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610029K21 product:hypothetical D111/G-patch domain containing protein, full insert sequence Length = 1627 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 182 cagcagctgctcttcagcaa 163
>dbj|AK078828.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430437K04 product:hypothetical D111/G-patch domain containing protein, full insert sequence Length = 746 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 181 cagcagctgctcttcagcaa 162
>dbj|AK017310.1| Mus musculus 6 days neonate head cDNA, RIKEN full-length enriched library, clone:5430414J21 product:hypothetical D111/G-patch domain containing protein, full insert sequence Length = 918 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 133 cagcagctgctcttcagcaa 114
>gb|AC007719.7|AC007719 Homo sapiens chromosome , clone RP11-3A12, complete sequence Length = 150831 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 atgtactttccgtatatttc 163 |||||||||||||||||||| Sbjct: 23021 atgtactttccgtatatttc 23040
>gb|AC008217.5|AC008217 Drosophila melanogaster, chromosome 3R, region 98B-98B, BAC clone BACR10J03, complete sequence Length = 193245 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 agctgcagcagctgctcttc 72 |||||||||||||||||||| Sbjct: 147960 agctgcagcagctgctcttc 147941
>gb|AC008253.8|AC008253 Drosophila melanogaster, chromosome 3R, region 98B1-98B2, BAC clone BACR48A16, complete sequence Length = 180887 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 agctgcagcagctgctcttc 72 |||||||||||||||||||| Sbjct: 116698 agctgcagcagctgctcttc 116679
>gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, complete sequence Length = 215079 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 433 gacaaagatgaaaatattga 452 |||||||||||||||||||| Sbjct: 125490 gacaaagatgaaaatattga 125509
>gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, complete sequence Length = 183408 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 atcttttccagctcttgaaagcat 372 |||||||||||| ||||||||||| Sbjct: 88061 atcttttccagcccttgaaagcat 88084
>gb|AC114814.5| Homo sapiens BAC clone RP11-1345D17 from 2, complete sequence Length = 181706 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 ctgcagcagctgctcttcagcaag 78 ||||||||||||||| |||||||| Sbjct: 42655 ctgcagcagctgctcatcagcaag 42632
>gb|AC154249.2| Mus musculus BAC clone RP24-188L2 from chromosome 14, complete sequence Length = 149132 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 atctcccaaccttgccttct 318 |||||||||||||||||||| Sbjct: 101864 atctcccaaccttgccttct 101883
>gb|AC134868.3| Mus musculus BAC clone RP23-75E2 from chromosome 16, complete sequence Length = 206328 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 atttgcatttatcttttcca 358 |||||||||||||||||||| Sbjct: 150308 atttgcatttatcttttcca 150289
>gb|BC080676.1| Mus musculus G patch domain containing 4, mRNA (cDNA clone IMAGE:6309057), with apparent retained intron Length = 2240 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 775 cagcagctgctcttcagcaa 756
>gb|AE003762.4| Drosophila melanogaster chromosome 3R, section 100 of 118 of the complete sequence Length = 231486 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 agctgcagcagctgctcttc 72 |||||||||||||||||||| Sbjct: 177638 agctgcagcagctgctcttc 177619
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 8.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 509 tatcatatccactttcaagaagattggcggcaagag 544 |||||||||||| ||||| ||||||||||||||| Sbjct: 307760 tatcatatccaccttcaaattgattggcggcaagag 307725
>gb|BC093381.1| Rattus norvegicus similar to RIKEN cDNA 2610029K21, mRNA (cDNA clone MGC:112675 IMAGE:7388663), complete cds Length = 1903 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 179 cagcagctgctcttcagcaa 160
>ref|NM_001024979.1| Rattus norvegicus similar to RIKEN cDNA 2610029K21 (RGD1311086), mRNA Length = 1903 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cagcagctgctcttcagcaa 77 |||||||||||||||||||| Sbjct: 179 cagcagctgctcttcagcaa 160
>emb|AL808124.12| Mouse DNA sequence from clone RP23-146I4 on chromosome X, complete sequence Length = 162375 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gatttgcatttatcttttcc 357 |||||||||||||||||||| Sbjct: 24478 gatttgcatttatcttttcc 24459
>gb|U10341.1|MMU10341 Mus musculus major 80,000 Mr fibrous sheath component (Fsc1) mRNA, complete cds Length = 2860 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gatttgcatttatcttttcc 357 |||||||||||||||||||| Sbjct: 1562 gatttgcatttatcttttcc 1543 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,232,612 Number of Sequences: 3902068 Number of extensions: 6232612 Number of successful extensions: 125624 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 125420 Number of HSP's gapped (non-prelim): 204 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
