ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8f21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 52 7e-04
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 52 7e-04
3dbj|AK071810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 7e-04
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 52 7e-04
5gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Can... 46 0.045
6gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Ca... 46 0.045
7gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana... 42 0.70
8gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, com... 40 2.8
9gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complet... 40 2.8
10emb|AL135935.17| Human DNA sequence from clone RP11-193E12 on ch... 40 2.8
11gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cance... 40 2.8
12emb|AL732611.21| Mouse DNA sequence from clone RP23-135A21 on ch... 40 2.8

>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                         
Query: 149   tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208
             |||||||||||||| ||| |  ||||||| ||||||||| ||||| || ||||| |||| 
Sbjct: 85192 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 85133

                      
Query: 209   aacccgcac 217
              ||||||||
Sbjct: 85132 tacccgcac 85124



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                            
Query: 149      tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208
                |||||||||||||| ||| |  ||||||| ||||||||| ||||| || ||||| |||| 
Sbjct: 18505877 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 18505818

                         
Query: 209      aacccgcac 217
                 ||||||||
Sbjct: 18505817 tacccgcac 18505809



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>dbj|AK071810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114H02, full
            insert sequence
          Length = 1843

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 149  tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208
            |||||||||||||| ||| |  ||||||| ||||||||| ||||| || ||||| |||| 
Sbjct: 1012 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 953

                     
Query: 209  aacccgcac 217
             ||||||||
Sbjct: 952  tacccgcac 944



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                            
Query: 149      tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208
                |||||||||||||| ||| |  ||||||| ||||||||| ||||| || ||||| |||| 
Sbjct: 18665278 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 18665219

                         
Query: 209      aacccgcac 217
                 ||||||||
Sbjct: 18665218 tacccgcac 18665210



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>gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165139

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 53    gtatctgcttcaggaagttgaag 75
             |||||||||||||||||||||||
Sbjct: 50630 gtatctgcttcaggaagttgaag 50652



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>gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152358

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 53     gtatctgcttcaggaagttgaag 75
              |||||||||||||||||||||||
Sbjct: 139500 gtatctgcttcaggaagttgaag 139522



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>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I,
             complete sequence
          Length = 86801

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    attgtttctctgattctctct 44
             |||||||||||||||||||||
Sbjct: 77374 attgtttctctgattctctct 77354



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>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence
          Length = 129417

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   tatcaggtactgtgctagag 183
             ||||||||||||||||||||
Sbjct: 90824 tatcaggtactgtgctagag 90843



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>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence
          Length = 148915

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    tatcaggtactgtgctagag 183
              ||||||||||||||||||||
Sbjct: 108625 tatcaggtactgtgctagag 108644



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>emb|AL135935.17| Human DNA sequence from clone RP11-193E12 on chromosome 20 Contains
             part of the PAK7 gene for p21(CDKN1A)-activated kinase 7,
             ESTs, STSs and GSSs, complete sequence
          Length = 54649

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 27    gtttctctgattctctctaccacaaggt 54
             ||||| |||| |||||||||||||||||
Sbjct: 19740 gtttccctgagtctctctaccacaaggt 19767



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>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   agatagctcccaacagccct 206
             ||||||||||||||||||||
Sbjct: 66471 agatagctcccaacagccct 66452



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>emb|AL732611.21| Mouse DNA sequence from clone RP23-135A21 on chromosome 4, complete
             sequence
          Length = 143036

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    ttctctctaccacaaggtat 56
             ||||||||||||||||||||
Sbjct: 11728 ttctctctaccacaaggtat 11709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,649,440
Number of Sequences: 3902068
Number of extensions: 1649440
Number of successful extensions: 121049
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120968
Number of HSP's gapped (non-prelim): 81
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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