| Clone Name | rbags8f21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 52.0 bits (26), Expect = 7e-04 Identities = 58/69 (84%) Strand = Plus / Minus Query: 149 tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208 |||||||||||||| ||| | ||||||| ||||||||| ||||| || ||||| |||| Sbjct: 85192 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 85133 Query: 209 aacccgcac 217 |||||||| Sbjct: 85132 tacccgcac 85124
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 52.0 bits (26), Expect = 7e-04 Identities = 58/69 (84%) Strand = Plus / Minus Query: 149 tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208 |||||||||||||| ||| | ||||||| ||||||||| ||||| || ||||| |||| Sbjct: 18505877 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 18505818 Query: 209 aacccgcac 217 |||||||| Sbjct: 18505817 tacccgcac 18505809
>dbj|AK071810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114H02, full insert sequence Length = 1843 Score = 52.0 bits (26), Expect = 7e-04 Identities = 58/69 (84%) Strand = Plus / Minus Query: 149 tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208 |||||||||||||| ||| | ||||||| ||||||||| ||||| || ||||| |||| Sbjct: 1012 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 953 Query: 209 aacccgcac 217 |||||||| Sbjct: 952 tacccgcac 944
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 52.0 bits (26), Expect = 7e-04 Identities = 58/69 (84%) Strand = Plus / Minus Query: 149 tcttatccgccttgntatcaggtactgtgctagagaatagatagctcccaacagccctaa 208 |||||||||||||| ||| | ||||||| ||||||||| ||||| || ||||| |||| Sbjct: 18665278 tcttatccgccttgatataacatactgtgatagagaataaatagcacctaacagtcctag 18665219 Query: 209 aacccgcac 217 |||||||| Sbjct: 18665218 tacccgcac 18665210
>gb|AC010182.16| Homo sapiens 12 BAC RP11-185N2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165139 Score = 46.1 bits (23), Expect = 0.045 Identities = 23/23 (100%) Strand = Plus / Plus Query: 53 gtatctgcttcaggaagttgaag 75 ||||||||||||||||||||||| Sbjct: 50630 gtatctgcttcaggaagttgaag 50652
>gb|AC011595.13| Homo sapiens 12 BAC RP11-114F10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152358 Score = 46.1 bits (23), Expect = 0.045 Identities = 23/23 (100%) Strand = Plus / Plus Query: 53 gtatctgcttcaggaagttgaag 75 ||||||||||||||||||||||| Sbjct: 139500 gtatctgcttcaggaagttgaag 139522
>gb|AC007190.4|AC007190 Genomic sequence for Arabidopsis thaliana BAC F23N19 from chromosome I, complete sequence Length = 86801 Score = 42.1 bits (21), Expect = 0.70 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 attgtttctctgattctctct 44 ||||||||||||||||||||| Sbjct: 77374 attgtttctctgattctctct 77354
>gb|AC146004.3| Pan troglodytes BAC clone RP43-161E12 from 7, complete sequence Length = 129417 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tatcaggtactgtgctagag 183 |||||||||||||||||||| Sbjct: 90824 tatcaggtactgtgctagag 90843
>gb|AC005030.1| Homo sapiens BAC clone GS1-589P19 from 7, complete sequence Length = 148915 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tatcaggtactgtgctagag 183 |||||||||||||||||||| Sbjct: 108625 tatcaggtactgtgctagag 108644
>emb|AL135935.17| Human DNA sequence from clone RP11-193E12 on chromosome 20 Contains part of the PAK7 gene for p21(CDKN1A)-activated kinase 7, ESTs, STSs and GSSs, complete sequence Length = 54649 Score = 40.1 bits (20), Expect = 2.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 27 gtttctctgattctctctaccacaaggt 54 ||||| |||| ||||||||||||||||| Sbjct: 19740 gtttccctgagtctctctaccacaaggt 19767
>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181174 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 agatagctcccaacagccct 206 |||||||||||||||||||| Sbjct: 66471 agatagctcccaacagccct 66452
>emb|AL732611.21| Mouse DNA sequence from clone RP23-135A21 on chromosome 4, complete sequence Length = 143036 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttctctctaccacaaggtat 56 |||||||||||||||||||| Sbjct: 11728 ttctctctaccacaaggtat 11709 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,649,440 Number of Sequences: 3902068 Number of extensions: 1649440 Number of successful extensions: 121049 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120968 Number of HSP's gapped (non-prelim): 81 length of query: 217 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 195 effective length of database: 17,147,199,772 effective search space: 3343703955540 effective search space used: 3343703955540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)