ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8f15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTX_PSEAE (P14608) Cytotoxin precursor (Leucocidin) 31 1.4
2METE_CHLRE (Q39586) 5-methyltetrahydropteroyltriglutamate--homoc... 29 5.2
3RADA_NANEQ (Q74MX9) DNA repair and recombination protein radA 28 6.7

>CTX_PSEAE (P14608) Cytotoxin precursor (Leucocidin)|
          Length = 286

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -2

Query: 363 TWDATXELKLGYNSTIRAGFPKLGLGAQISISAEXYGEYNWGQTMEKKVRHEVEYEAAVP 184
           TW  T +LK+G    ++A  P +G GA+I+ + E       G +  K   +    +  + 
Sbjct: 96  TWSVTEQLKVGVEVKVKANIPLVG-GAEITSTVELSLSSTQGASTSKSSNYGASTKVLIS 154

Query: 183 P 181
           P
Sbjct: 155 P 155



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>METE_CHLRE (Q39586) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 814

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 324 STIRAGFPKLGLGAQISISAEXYGEYNWGQTMEKKVRHEVEYEA 193
           ST   GFP++G   Q+  + E Y + + G+     V H+V+ +A
Sbjct: 3   STTTIGFPRIGNQRQLKFAMESYFKGDSGEAELLAVAHKVQSDA 46



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>RADA_NANEQ (Q74MX9) DNA repair and recombination protein radA|
          Length = 325

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 297 LGLGAQISISAEXYGEYNWGQTMEKKVRHEVEYEAAVPP 181
           LG G + +   E YGEY  G+T   +V H++  +  +PP
Sbjct: 100 LGGGIETAALTEFYGEYGSGKT---QVGHQLAVDVQLPP 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,084,843
Number of Sequences: 219361
Number of extensions: 506689
Number of successful extensions: 1329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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