ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109791.1| Zea mays CL4689_1 mRNA sequence 250 4e-63
2dbj|AK060675.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
4dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
5ref|NM_117111.3| Arabidopsis thaliana unknown protein AT4G10430 ... 52 0.002
6ref|NM_202800.1| Arabidopsis thaliana unknown protein AT4G10430 ... 52 0.002
7gb|AY093326.1| Arabidopsis thaliana putative protein (At4g10430)... 52 0.002
8gb|AY059867.1| Arabidopsis thaliana putative protein (At4g10430;... 52 0.002
9emb|BX827131.1|CNS0A4JU Arabidopsis thaliana Full-length cDNA Co... 52 0.002
10emb|BX827040.1|CNS0A4LJ Arabidopsis thaliana Full-length cDNA Co... 52 0.002
11emb|BX827271.1|CNS0A4CM Arabidopsis thaliana Full-length cDNA Co... 52 0.002
12gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, complete s... 46 0.13
13gb|AE006328.1| Lactococcus lactis subsp. lactis IL1403 section 9... 40 7.7
14gb|AC126038.4| Mus musculus BAC clone RP24-230C18 from chromosom... 40 7.7
15emb|BX927186.21| Zebrafish DNA sequence from clone DKEY-29H4 in ... 40 7.7
16gb|DQ321029.1| Influenza A virus (A/quail/Guangxi/575/2005(H5N1)... 40 7.7
17gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete seq... 40 7.7
18gb|AC079336.5| Homo sapiens chromosome 17, clone RP11-466A19, co... 40 7.7
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
20gb|AC092162.3| Homo sapiens BAC clone RP11-632P5 from 2, complet... 40 7.7
21gb|AC002119.2| Homo sapiens chromosome 17, clone CTC-347H5, comp... 40 7.7
22emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in... 40 7.7
23gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.7
24emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 40 7.7
25gb|AC147247.5| Mus musculus BAC clone RP23-468K14 from 8, comple... 40 7.7
26emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 7.7
27emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 7.7 
>gb|AY109791.1| Zea mays CL4689_1 mRNA sequence
          Length = 1126

 Score =  250 bits (126), Expect = 4e-63
 Identities = 225/258 (87%)
 Strand = Plus / Minus

                                                                       
Query: 311 tcttcatctttgctttgaacctcagtttcagggccagagtctccaccgtgttgacgaagt 370
           |||||||||||||||| ||||||||||||||  |||| |||||||  |||| ||| ||||
Sbjct: 850 tcttcatctttgctttaaacctcagtttcagtaccagtgtctccatagtgtggacaaagt 791

                                                                       
Query: 371 tgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattcagaggtga 430
           |||| || ||||| ||||||||||||||||| || |||| |||||||||||| || |  |
Sbjct: 790 tgccgactgccataaccaccagcaagatcccgcagactaagacctgccattcggaagcaa 731

                                                                       
Query: 431 gcccgtgccacgccgtctgaagaagcaacactccaacatatccttcaaacccctgtaata 490
           |||| ||| | ||||||||||||||||| |||||||||||| |||| || ||||||||||
Sbjct: 730 gcccatgcaaagccgtctgaagaagcaaaactccaacatatgcttcgaaaccctgtaata 671

                                                                       
Query: 491 caaaaagaacaggatatagtagcaatagctgcccttccacaccagctgtttctccagcga 550
             ||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |
Sbjct: 670 tgaaaaggacaggatatagcagcaagagctgcccctccacaccagctgtttcgccagcaa 611

                             
Query: 551 cgacatccattcttttag 568
           ||||||||||||||||||
Sbjct: 610 cgacatccattcttttag 593
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>dbj|AK060675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A04, full
            insert sequence
          Length = 1332

 Score =  214 bits (108), Expect = 2e-52
 Identities = 219/256 (85%)
 Strand = Plus / Minus

                                                                        
Query: 313  ttcatctttgctttgaacctcagtttcagggccagagtctccaccgtgttgacgaagttg 372
            ||||| |||||||||||||||| ||| |    || |||||||| ||||||||| ||||||
Sbjct: 1063 ttcatttttgctttgaacctcaattttaacatcaaagtctccatcgtgttgacaaagttg 1004

                                                                        
Query: 373  ccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattcagaggtgagc 432
            || || ||||| |||||||||||||||||||||||||  ||||||||||| || |  |||
Sbjct: 1003 ccgactgccattaccaccagcaagatcccacaaactacaacctgccattccgatgcaagc 944

                                                                        
Query: 433  ccgtgccacgccgtctgaagaagcaacactccaacatatccttcaaacccctgtaataca 492
            |||||| | ||||||| |||||| || ||||||||||||||||| ||  ||||||||   
Sbjct: 943  ccgtgcaaagccgtcttaagaagtaatactccaacatatccttcgaaaacctgtaatgtg 884

                                                                        
Query: 493  aaaagaacaggatatagtagcaatagctgcccttccacaccagctgtttctccagcgacg 552
            ||||| || || || |||||||| |||||||||||||||||||||||||||||||| || 
Sbjct: 883  aaaaggaccgggtaaagtagcaagagctgcccttccacaccagctgtttctccagcaaca 824

                            
Query: 553  acatccattcttttag 568
            ||||||||||||||||
Sbjct: 823  acatccattcttttag 808
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                          
Query: 508    agtagcaatagctgcccttccacaccagctgtttctccagcgacgacatccattctttta 567
              |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 400590 agtagcaagagctgcccttccacaccagctgtttctccagcaacaacatccattctttta 400531

               
Query: 568    g 568
              |
Sbjct: 400530 g 400530



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                          
Query: 313    ttcatctttgctttgaacctcagtttcagggccagagtctccaccgtgttgacgaagttg 372
              ||||| |||||||||||||||| ||| |    || |||||||| ||||||||| ||||||
Sbjct: 403142 ttcatttttgctttgaacctcaattttaacatcaaagtctccatcgtgttgacaaagttg 403083

                                                   
Query: 373    ccaaccgccatcaccaccagcaagatcccacaaacta 409
              || || ||||| |||||||||||||||||||||||||
Sbjct: 403082 ccgactgccattaccaccagcaagatcccacaaacta 403046



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 413    cctgccattcagaggtgagcccgtgccacgccgtctgaagaagcaacactccaacatatc 472
              |||||||||| || |  ||||||||| | ||||||| |||||| || |||||||||||||
Sbjct: 400931 cctgccattccgatgcaagcccgtgcaaagccgtcttaagaagtaatactccaacatatc 400872

                  
Query: 473    cttc 476
              ||||
Sbjct: 400871 cttc 400868
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>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1359_D06
          Length = 146805

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 58/61 (95%)
 Strand = Plus / Minus

                                                                          
Query: 508    agtagcaatagctgcccttccacaccagctgtttctccagcgacgacatccattctttta 567
              |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 129374 agtagcaagagctgcccttccacaccagctgtttctccagcaacaacatccattctttta 129315

               
Query: 568    g 568
              |
Sbjct: 129314 g 129314



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 84/97 (86%)
 Strand = Plus / Minus

                                                                          
Query: 313    ttcatctttgctttgaacctcagtttcagggccagagtctccaccgtgttgacgaagttg 372
              ||||| |||||||||||||||| ||| |    || |||||||| ||||||||| ||||||
Sbjct: 131926 ttcatttttgctttgaacctcaattttaacatcaaagtctccatcgtgttgacaaagttg 131867

                                                   
Query: 373    ccaaccgccatcaccaccagcaagatcccacaaacta 409
              || || ||||| |||||||||||||||||||||||||
Sbjct: 131866 ccgactgccattaccaccagcaagatcccacaaacta 131830



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                          
Query: 413    cctgccattcagaggtgagcccgtgccacgccgtctgaagaagcaacactccaacatatc 472
              |||||||||| || |  ||||||||| | ||||||| |||||| || |||||||||||||
Sbjct: 129715 cctgccattccgatgcaagcccgtgcaaagccgtcttaagaagtaatactccaacatatc 129656

                  
Query: 473    cttc 476
              ||||
Sbjct: 129655 cttc 129652
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>ref|NM_117111.3| Arabidopsis thaliana unknown protein AT4G10430 transcript variant
            AT4G10430.1 mRNA, complete cds
          Length = 1356

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 366  gaagttgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattca 423
            |||||| ||||| |||||||| ||||| |  ||||||||||| || ||||||||||||
Sbjct: 1043 gaagttcccaactgccatcactaccagaagaatcccacaaaccatcacctgccattca 986
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>ref|NM_202800.1| Arabidopsis thaliana unknown protein AT4G10430 transcript variant
            AT4G10430.3 mRNA, complete cds
          Length = 1355

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 366  gaagttgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattca 423
            |||||| ||||| |||||||| ||||| |  ||||||||||| || ||||||||||||
Sbjct: 1037 gaagttcccaactgccatcactaccagaagaatcccacaaaccatcacctgccattca 980
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>gb|AY093326.1| Arabidopsis thaliana putative protein (At4g10430) mRNA, complete
           cds
          Length = 1179

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 366 gaagttgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattca 423
           |||||| ||||| |||||||| ||||| |  ||||||||||| || ||||||||||||
Sbjct: 960 gaagttcccaactgccatcactaccagaagaatcccacaaaccatcacctgccattca 903
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>gb|AY059867.1| Arabidopsis thaliana putative protein (At4g10430; F7L13.10) mRNA,
           complete cds
          Length = 1221

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 366 gaagttgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattca 423
           |||||| ||||| |||||||| ||||| |  ||||||||||| || ||||||||||||
Sbjct: 991 gaagttcccaactgccatcactaccagaagaatcccacaaaccatcacctgccattca 934
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>emb|BX827131.1|CNS0A4JU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS12ZC12 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1320

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 366  gaagttgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattca 423
            |||||| ||||| |||||||| ||||| |  ||||||||||| || ||||||||||||
Sbjct: 1054 gaagttcccaactgccatcactaccagaagaatcccacaaaccatcacctgccattca 997
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>emb|BX827040.1|CNS0A4LJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB8ZA11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1298

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 366  gaagttgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattca 423
            |||||| ||||| |||||||| ||||| |  ||||||||||| || ||||||||||||
Sbjct: 1022 gaagttcccaactgccatcactaccagaagaatcccacaaaccatcacctgccattca 965
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>emb|BX827271.1|CNS0A4CM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS30ZE12 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1347

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 366  gaagttgccaaccgccatcaccaccagcaagatcccacaaactatgacctgccattca 423
            |||||| ||||| |||||||| ||||| |  ||||||||||| || ||||||||||||
Sbjct: 1037 gaagttcccaactgccatcactaccagaagaatcccacaaaccatcacctgccattca 980
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>gb|AC149298.1| Populus trichocarpa clone Pop1-021H24, complete sequence
          Length = 146635

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 519    ctgcccttccacaccagctgtttctcc 545
              |||||| ||||||||||||||||||||
Sbjct: 138271 ctgcccatccacaccagctgtttctcc 138245
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>gb|AE006328.1| Lactococcus lactis subsp. lactis IL1403 section 90 of 218 of the
            complete genome
          Length = 10499

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  tggttttgtcagcattgatg 208
            ||||||||||||||||||||
Sbjct: 7619 tggttttgtcagcattgatg 7638
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>gb|AC126038.4| Mus musculus BAC clone RP24-230C18 from chromosome 8, complete sequence
          Length = 196490

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    cacaaactatgacctgccat 420
              ||||||||||||||||||||
Sbjct: 138277 cacaaactatgacctgccat 138296
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>emb|BX927186.21| Zebrafish DNA sequence from clone DKEY-29H4 in linkage group 17,
             complete sequence
          Length = 197409

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   tatccttcaaacccctgtaa 488
             ||||||||||||||||||||
Sbjct: 30023 tatccttcaaacccctgtaa 30042
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>gb|DQ321029.1| Influenza A virus (A/quail/Guangxi/575/2005(H5N1)) neuraminidase (NA)
            gene, partial cds
          Length = 1338

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  aacaggatatagtagcaata 517
            ||||||||||||||||||||
Sbjct: 1109 aacaggatatagtagcaata 1128
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>gb|AC170583.6| Medicago truncatula clone mth2-19b5, complete sequence
          Length = 113632

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 526   tccacaccagctgtttctcc 545
             ||||||||||||||||||||
Sbjct: 42196 tccacaccagctgtttctcc 42177
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>gb|AC079336.5| Homo sapiens chromosome 17, clone RP11-466A19, complete sequence
          Length = 168851

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 201   cattgatgtttccaggcatggatg 224
             ||||||||||||||||||| ||||
Sbjct: 88466 cattgatgtttccaggcatagatg 88489
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 372      gccaaccgccatcaccaccagcaa 395
                ||||||| ||||||||||||||||
Sbjct: 13206595 gccaaccaccatcaccaccagcaa 13206618
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>gb|AC092162.3| Homo sapiens BAC clone RP11-632P5 from 2, complete sequence
          Length = 155011

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    ggatggaggagtggcaccat 239
              ||||||||||||||||||||
Sbjct: 109064 ggatggaggagtggcaccat 109083
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>gb|AC002119.2| Homo sapiens chromosome 17, clone CTC-347H5, complete sequence
          Length = 107977

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 201   cattgatgtttccaggcatggatg 224
             ||||||||||||||||||| ||||
Sbjct: 80246 cattgatgtttccaggcatagatg 80223
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>emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in linkage group 24,
             complete sequence
          Length = 80334

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 469   tatccttcaaacccctgtaa 488
             ||||||||||||||||||||
Sbjct: 25367 tatccttcaaacccctgtaa 25348
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 372      gccaaccgccatcaccaccagcaa 395
                ||||||| ||||||||||||||||
Sbjct: 13160869 gccaaccaccatcaccaccagcaa 13160892
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>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 372    gccaaccgccatcaccaccagcaa 395
              ||||||| ||||||||||||||||
Sbjct: 124148 gccaaccaccatcaccaccagcaa 124125
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>gb|AC147247.5| Mus musculus BAC clone RP23-468K14 from 8, complete sequence
          Length = 184377

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 401    cacaaactatgacctgccat 420
              ||||||||||||||||||||
Sbjct: 117279 cacaaactatgacctgccat 117260
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     acaaaaaatggtgtaccgat 168
               ||||||||||||||||||||
Sbjct: 3364506 acaaaaaatggtgtaccgat 3364487
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 474    ttcaaacccctgtaatacaaaaag 497
              |||||| |||||||||||||||||
Sbjct: 671024 ttcaaaaccctgtaatacaaaaag 671001


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,764,268
Number of Sequences: 3902068
Number of extensions: 4764268
Number of successful extensions: 91042
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90868
Number of HSP's gapped (non-prelim): 171
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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