ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADA2A_PIG (P18871) Alpha-2A adrenergic receptor (Alpha-2A adreno... 30 5.4
2CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked h... 30 7.1
3DRD4_HUMAN (P21917) D(4) dopamine receptor (Dopamine D4 receptor... 30 9.3

>ADA2A_PIG (P18871) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR)
          Length = 450

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 513 RRRPAA-GPLKPKTPAQTRRQSRADSTAWKGSRKRIRFQSFTLCLPLALGTWSCC 352
           RR P A GP  P T A   R   A ++ W+G + R +   FT  L + +G +  C
Sbjct: 334 RRGPGAPGPGAPATGAGEERGGVAKASRWRGRQNREK--RFTFVLAVVIGVFVVC 386



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>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)|
          Length = 546

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -3

Query: 522 YTSRRRPAAGPLKP-----KTPAQTRRQSRADSTAWKGSRKRIR 406
           + +RRRP    + P     +TP+  R   RA ++A  GSRKR R
Sbjct: 9   FFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRAR 52



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>DRD4_HUMAN (P21917) D(4) dopamine receptor (Dopamine D4 receptor) (D(2C)|
           dopamine receptor)
          Length = 467

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 498 AGPLKPKTPAQTRRQSRADSTAWKGSRKRIRFQSFTLCLPLALGTWSCC 352
           A  L P+TP QTRR+ RA  T  +    R+        LP+ +G +  C
Sbjct: 366 AAALPPQTPPQTRRRRRAKITGRERKAMRV--------LPVVVGAFLLC 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,852,542
Number of Sequences: 219361
Number of extensions: 1684788
Number of successful extensions: 3861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3861
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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