ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8e24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAP2_HUMAN (Q9BXP8) Pappalysin-2 precursor (EC 3.4.24.-) (Pregna... 31 2.5
2KCNS2_HUMAN (Q9ULS6) Potassium voltage-gated channel subfamily S... 31 2.5
3KCNS2_RAT (Q9ER26) Potassium voltage-gated channel subfamily S m... 30 4.3
4KCNS2_MOUSE (O35174) Potassium voltage-gated channel subfamily S... 30 4.3
5SYMPK_HUMAN (Q92797) Symplekin 29 9.6
6SYMPK_MOUSE (Q80X82) Symplekin 29 9.6

>PAP2_HUMAN (Q9BXP8) Pappalysin-2 precursor (EC 3.4.24.-) (Pregnancy-associated|
           plasma protein-A2) (PAPP-A2) (Pregnancy-associated
           plasma protein-E1) (PAPP-E)
          Length = 1791

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +3

Query: 366 VIRMNVIAICIDRAANPDVLDSDARG*EEALDEATPGFHIVEHFTVQNL 512
           VIR  V+ IC D   NP V +   R   EAL+EA   ++I    +V  +
Sbjct: 524 VIRYQVVNICDDEGLNPIVSEEQIRLQHEALNEAFSRYNISWQLSVHQV 572



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>KCNS2_HUMAN (Q9ULS6) Potassium voltage-gated channel subfamily S member 2|
           (Voltage-gated potassium channel subunit Kv9.2)
           (Delayed-rectifier K(+) channel alpha subunit 2)
          Length = 477

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 294 RQELVSSTRRSGHSKMAR--SI*SAIVIRMNVIAICIDRAANPDVLDSDARG*EEALDEA 467
           R++L  +    G+S ++R  SI S +V+  ++I +C++   +  + DS     E+     
Sbjct: 170 RRQLWLALDNPGYSVLSRVFSILSILVVMGSIITMCLNSLPDFQIPDSQGNPGED----- 224

Query: 468 TPGFHIVEHFTV 503
            P F IVEHF +
Sbjct: 225 -PRFEIVEHFGI 235



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>KCNS2_RAT (Q9ER26) Potassium voltage-gated channel subfamily S member 2|
           (Voltage-gated potassium channel subunit Kv9.2)
           (Delayed-rectifier K(+) channel alpha subunit 2)
          Length = 477

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 294 RQELVSSTRRSGHSKMAR--SI*SAIVIRMNVIAICIDRAANPDVLDSDARG*EEALDEA 467
           R++L  +    G+S ++R  S+ S +V+  ++I +C++   +  + DS     E+     
Sbjct: 170 RRQLWLALDNPGYSVLSRVFSVLSILVVLGSIITMCLNSLPDFQIPDSQGNPGED----- 224

Query: 468 TPGFHIVEHFTV 503
            P F IVEHF +
Sbjct: 225 -PRFEIVEHFGI 235



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>KCNS2_MOUSE (O35174) Potassium voltage-gated channel subfamily S member 2|
           (Voltage-gated potassium channel subunit Kv9.2)
           (Delayed-rectifier K(+) channel alpha subunit 2)
          Length = 477

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +3

Query: 294 RQELVSSTRRSGHSKMAR--SI*SAIVIRMNVIAICIDRAANPDVLDSDARG*EEALDEA 467
           R++L  +    G+S ++R  S+ S +V+  ++I +C++   +  + DS     E+     
Sbjct: 170 RRQLWLALDNPGYSVLSRVFSVLSILVVLGSIITMCLNSLPDFQIPDSQGNPGED----- 224

Query: 468 TPGFHIVEHFTV 503
            P F IVEHF +
Sbjct: 225 -PRFEIVEHFGI 235



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>SYMPK_HUMAN (Q92797) Symplekin|
          Length = 1274

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 181  WAAYVECCRGVKEVGEEVTVQVRPEQLVSSTRRC 282
            W  +++CC+  K    +V +Q+ P+QL +   +C
Sbjct: 1035 WEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKC 1068



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>SYMPK_MOUSE (Q80X82) Symplekin|
          Length = 1284

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 181  WAAYVECCRGVKEVGEEVTVQVRPEQLVSSTRRC 282
            W  +++CC+  K    +V +Q+ P+QL +   +C
Sbjct: 1035 WEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKC 1068


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,332,918
Number of Sequences: 219361
Number of extensions: 1808099
Number of successful extensions: 4829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4827
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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