ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8e23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 129 bits (65), Expect = 8e-27 Identities = 87/95 (91%) Strand = Plus / Minus Query: 175 ctcctgaagaagttcagcggaacagacggcatcttgnggcggaacctcgggtgcctcagg 234 ||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| |||| | Sbjct: 48362 ctcctgaagaagttcagaggaacagagggcatcttgtggcggaaccttgggtgtctcaag 48303 Query: 235 gtgtacaggcctgcanggaaaaccacaacacggaa 269 ||||||||||||||| |||| |||||||||||||| Sbjct: 48302 gtgtacaggcctgcaaggaagaccacaacacggaa 48268
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 129 bits (65), Expect = 8e-27 Identities = 87/95 (91%) Strand = Plus / Minus Query: 175 ctcctgaagaagttcagcggaacagacggcatcttgnggcggaacctcgggtgcctcagg 234 ||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| |||| | Sbjct: 17671604 ctcctgaagaagttcagaggaacagagggcatcttgtggcggaaccttgggtgtctcaag 17671545 Query: 235 gtgtacaggcctgcanggaaaaccacaacacggaa 269 ||||||||||||||| |||| |||||||||||||| Sbjct: 17671544 gtgtacaggcctgcaaggaagaccacaacacggaa 17671510
>dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full insert sequence Length = 3254 Score = 129 bits (65), Expect = 8e-27 Identities = 87/95 (91%) Strand = Plus / Minus Query: 175 ctcctgaagaagttcagcggaacagacggcatcttgnggcggaacctcgggtgcctcagg 234 ||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| |||| | Sbjct: 2719 ctcctgaagaagttcagaggaacagagggcatcttgtggcggaaccttgggtgtctcaag 2660 Query: 235 gtgtacaggcctgcanggaaaaccacaacacggaa 269 ||||||||||||||| |||| |||||||||||||| Sbjct: 2659 gtgtacaggcctgcaaggaagaccacaacacggaa 2625
>dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H09, full insert sequence Length = 1888 Score = 129 bits (65), Expect = 8e-27 Identities = 87/95 (91%) Strand = Plus / Minus Query: 175 ctcctgaagaagttcagcggaacagacggcatcttgnggcggaacctcgggtgcctcagg 234 ||||||||||||||||| |||||||| ||||||||| |||||||||| ||||| |||| | Sbjct: 1448 ctcctgaagaagttcagaggaacagagggcatcttgtggcggaaccttgggtgtctcaag 1389 Query: 235 gtgtacaggcctgcanggaaaaccacaacacggaa 269 ||||||||||||||| |||| |||||||||||||| Sbjct: 1388 gtgtacaggcctgcaaggaagaccacaacacggaa 1354
>gb|AY111562.1| Zea mays CL51463_1 mRNA sequence Length = 612 Score = 111 bits (56), Expect = 2e-21 Identities = 93/106 (87%) Strand = Plus / Plus Query: 177 cctgaagaagttcagcggaacagacggcatcttgnggcggaacctcgggtgcctcagggt 236 |||||||||||| ||||| || |||||||||||| |||||||||| ||||||||||| | Sbjct: 384 cctgaagaagttgagcgggacggacggcatcttgtggcggaacctggggtgcctcagcat 443 Query: 237 gtacaggcctgcanggaaaaccacaacacggaacggtgtgacgtac 282 ||||||||| || |||| ||||| || |||||||||||||||||| Sbjct: 444 gtacaggcccgcgaggaagaccacgacccggaacggtgtgacgtac 489
>gb|AY104073.1| Zea mays PCO099302 mRNA sequence Length = 1254 Score = 95.6 bits (48), Expect = 1e-16 Identities = 88/102 (86%) Strand = Plus / Minus Query: 177 cctgaagaagttcagcggaacagacggcatcttgnggcggaacctcgggtgcctcagggt 236 |||||||||||| ||||| ||||| ||||||||| |||||||||| ||||||||||| Sbjct: 958 cctgaagaagttgagcgggacagatggcatcttgtggcggaacctggggtgcctcagcac 899 Query: 237 gtacaggcctgcanggaaaaccacaacacggaacggtgtgac 278 |||||||||||| |||| ||||| || |||||||| ||||| Sbjct: 898 gtacaggcctgcgaggaagaccacgacgcggaacggagtgac 857
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 aacctcgggtgcctcagggt 236 |||||||||||||||||||| Sbjct: 30318823 aacctcgggtgcctcagggt 30318842
>dbj|AP003343.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0042A10 Length = 146840 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 aacctcgggtgcctcagggt 236 |||||||||||||||||||| Sbjct: 107142 aacctcgggtgcctcagggt 107161
>dbj|AP002899.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456A01 Length = 143710 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 aacctcgggtgcctcagggt 236 |||||||||||||||||||| Sbjct: 4550 aacctcgggtgcctcagggt 4569 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,363,523 Number of Sequences: 3902068 Number of extensions: 1363523 Number of successful extensions: 19091 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 19061 Number of HSP's gapped (non-prelim): 30 length of query: 404 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 382 effective length of database: 17,147,199,772 effective search space: 6550230312904 effective search space used: 6550230312904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
