ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7p13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_368566.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 2.2
2gb|AC147082.2| Mus musculus BAC clone RP23-321E5 from chromosome... 42 2.2
3gb|AC117219.2| Mus musculus BAC clone RP23-344D18 from chromosom... 42 2.2
4emb|AL596170.1| Listeria innocua Clip11262 complete genome, segm... 42 2.2
5gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, comp... 42 2.2
6emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in... 42 2.2
7gb|AC124560.4| Mus musculus BAC clone RP23-166O22 from chromosom... 40 8.6
8gb|AC125038.4| Mus musculus BAC clone RP23-333P7 from chromosome... 40 8.6
9gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete s... 40 8.6
10emb|AL139108.17| Human DNA sequence from clone RP4-759O7 on chro... 40 8.6
11gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, com... 40 8.6
12dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
13gb|AC104229.18| Homo sapiens chromosome 15, clone RP11-23A22, co... 40 8.6
14emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chr... 40 8.6
15gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6

>ref|XM_368566.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00678.4) partial mRNA
          Length = 810

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 417 tggaggcacgtttgcttttgagatg 441
           ||||||||| |||||||||||||||
Sbjct: 405 tggaggcacctttgcttttgagatg 429



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>gb|AC147082.2| Mus musculus BAC clone RP23-321E5 from chromosome 9, complete sequence
          Length = 202957

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    tcatgagctgaacaaaagcac 304
              |||||||||||||||||||||
Sbjct: 130205 tcatgagctgaacaaaagcac 130225



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>gb|AC117219.2| Mus musculus BAC clone RP23-344D18 from chromosome 9, complete sequence
          Length = 216199

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 284    tcatgagctgaacaaaagcac 304
              |||||||||||||||||||||
Sbjct: 213068 tcatgagctgaacaaaagcac 213088



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>emb|AL596170.1| Listeria innocua Clip11262 complete genome, segment 8/12
          Length = 313450

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 344    agtgtttcttctacttctaca 364
              |||||||||||||||||||||
Sbjct: 232081 agtgtttcttctacttctaca 232101



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>gb|AC026226.9| Homo sapiens chromosome 10 clone RP11-81B10, complete sequence
          Length = 158556

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 432   ttttgagatgttctgttgccc 452
             |||||||||||||||||||||
Sbjct: 83462 ttttgagatgttctgttgccc 83482



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>emb|BX649398.4| Zebrafish DNA sequence from clone DKEY-202B22 in linkage group 4,
             complete sequence
          Length = 166156

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 540   atcaatctgcttggcgtgtct 560
             |||||||||||||||||||||
Sbjct: 43906 atcaatctgcttggcgtgtct 43926



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>gb|AC124560.4| Mus musculus BAC clone RP23-166O22 from chromosome 5, complete sequence
          Length = 222593

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    tatagatttaacagcagtca 102
             ||||||||||||||||||||
Sbjct: 82387 tatagatttaacagcagtca 82406



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>gb|AC125038.4| Mus musculus BAC clone RP23-333P7 from chromosome 5, complete sequence
          Length = 198463

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    tatagatttaacagcagtca 102
             ||||||||||||||||||||
Sbjct: 53710 tatagatttaacagcagtca 53691



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>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence
          Length = 128493

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    atctatctatagatttaaca 95
             ||||||||||||||||||||
Sbjct: 26654 atctatctatagatttaaca 26673



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>emb|AL139108.17| Human DNA sequence from clone RP4-759O7 on chromosome 6 Contains part
             of the FUT9 gene for fucosyltransferase 9 (alpha (1,3)
             fucosyltransferase), complete sequence
          Length = 30544

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   aaaggtttgctaattagtct 284
             ||||||||||||||||||||
Sbjct: 17934 aaaggtttgctaattagtct 17915



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>gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, complete sequence
          Length = 142867

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    gtctcatgagctgaacaaaa 300
              ||||||||||||||||||||
Sbjct: 108427 gtctcatgagctgaacaaaa 108446



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 427     tttgcttttgagatgttctg 446
               ||||||||||||||||||||
Sbjct: 1175530 tttgcttttgagatgttctg 1175549



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>gb|AC104229.18| Homo sapiens chromosome 15, clone RP11-23A22, complete sequence
          Length = 168235

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   gatatccatttccccatctc 211
             ||||||||||||||||||||
Sbjct: 68639 gatatccatttccccatctc 68620



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>emb|AL773567.16| Mouse DNA sequence from clone RP23-204P1 on chromosome 4, complete
             sequence
          Length = 189970

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   cagtgtttcttctacttcta 362
             ||||||||||||||||||||
Sbjct: 53524 cagtgtttcttctacttcta 53543



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>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02,
             complete sequence
          Length = 90509

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   tttgcttttgagatgttctg 446
             ||||||||||||||||||||
Sbjct: 25816 tttgcttttgagatgttctg 25835


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,963,352
Number of Sequences: 3902068
Number of extensions: 4963352
Number of successful extensions: 103695
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103637
Number of HSP's gapped (non-prelim): 58
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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