ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7p09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC122338.2| Mus musculus BAC clone RP23-353I2 from chromosome... 40 3.1
2emb|CR626942.6| Zebrafish DNA sequence from clone DKEY-189F18 in... 40 3.1
3emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 i... 40 3.1
4gb|AC079955.9| Homo sapiens chromosome 10 clone RP11-134O16, com... 40 3.1
5emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in l... 40 3.1

>gb|AC122338.2| Mus musculus BAC clone RP23-353I2 from chromosome 6, complete sequence
          Length = 181128

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 50     cttcaaacaaattaaatgacctttgacc 77
              ||||||||||||||||| | ||||||||
Sbjct: 112977 cttcaaacaaattaaattagctttgacc 113004



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>emb|CR626942.6| Zebrafish DNA sequence from clone DKEY-189F18 in linkage group 17,
             complete sequence
          Length = 113259

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    tgcattcatcttcaaacaaa 60
             ||||||||||||||||||||
Sbjct: 52940 tgcattcatcttcaaacaaa 52921



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>emb|AL807754.8| Zebrafish DNA sequence from clone CH211-197B11 in linkage group 15
             Contains the 3' part of the odz4 gene (odd Oz/ten-m
             homolog 4) and a CpG island, complete sequence
          Length = 193544

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    ttcatcttcaaacaaattaa 64
             ||||||||||||||||||||
Sbjct: 47062 ttcatcttcaaacaaattaa 47043



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>gb|AC079955.9| Homo sapiens chromosome 10 clone RP11-134O16, complete sequence
          Length = 192042

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   gaatagctgggctcaaacct 223
             ||||||||||||||||||||
Sbjct: 76218 gaatagctgggctcaaacct 76199



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>emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in linkage group 17, complete
              sequence
          Length = 200306

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     tgcattcatcttcaaacaaa 60
              ||||||||||||||||||||
Sbjct: 116862 tgcattcatcttcaaacaaa 116843


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,888,919
Number of Sequences: 3902068
Number of extensions: 1888919
Number of successful extensions: 32567
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32559
Number of HSP's gapped (non-prelim): 8
length of query: 244
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 222
effective length of database: 17,147,199,772
effective search space: 3806678349384
effective search space used: 3806678349384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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