>ATPQ_ARATH (Q9FT52) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 167

 Score =  164 bits (416), Expect = 8e-41
 Identities = 79/108 (73%), Positives = 85/108 (78%)
 Frame = -2

Query: 473 PIDWEYYRKGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFDALLVELKEAEKTSLKE 294
           PIDW+YYRKGIG+ +VD YKEAYDSIEIPKYVD VTP YKPKFDALLVELKEAE+ SLKE
Sbjct: 60  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 119

Query: 293 SXXXXXXXXXXXXXXXXISTMTADEYFAKHPELKKKFDDEMRNDYWGY 150
           S                +STMTADEYF KHPELKKKFDDE+RND WGY
Sbjct: 120 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 167

>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor|
           YT521) (RA301-binding protein)
          Length = 738

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 324 EGGREDISEGIREDREGDC*NEGDEEKDQHND 229
           EGG ED+ E    D +GD   E DE+ ++  D
Sbjct: 202 EGGEEDVEEDEEVDEDGDDDEEVDEDAEEEED 233

>ATP5H_RAT (P31399) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 470 IDWEYYRKGIGSK-VVDMYKEAYDSIEIPKYVDTVT 366
           IDW YYR  +    +VD +K  Y++++IP   D  T
Sbjct: 51  IDWAYYRANVDKPGLVDDFKNKYNALKIPVPEDKYT 86

>AATF_RAT (Q9QYW0) Protein AATF (Apoptosis-antagonizing transcription factor)|
          Length = 523

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -1

Query: 324 EGGREDISEGIREDREGDC*NEGDEEKDQHNDSRRVL 214
           EG  E+ISE + ED EG+  +E D E+D++++   V+
Sbjct: 139 EGLEEEISEDVEEDLEGE--DEEDREEDRNSEDDGVV 173

>ATP5H_MOUSE (Q9DCX2) ATP synthase D chain, mitochondrial (EC 3.6.3.14)|
          Length = 160

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 470 IDWEYYRKGIGSK-VVDMYKEAYDSIEIPKYVDTVT 366
           IDW YYR  +    +VD +++ Y++++IP   D  T
Sbjct: 51  IDWAYYRANVAKPGLVDDFEKKYNALKIPVPEDKYT 86

>PUAC_STRMI (P13249) Puromycin N-acetyltransferase (EC 2.3.-.-)|
          Length = 199

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 461 EYYRKGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFDAL 336
           ++  KG+GS VV    EA +   +P +++T  PR  P ++ L
Sbjct: 133 DHQGKGLGSAVVLPGVEAAERAGVPAFLETSAPRNLPFYERL 174

>BFR2_ASPFU (Q4WMI1) Protein bfr2|
          Length = 565

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 11/47 (23%)
 Frame = -1

Query: 324 EGGREDISEGIRED-----------REGDC*NEGDEEKDQHNDSRRV 217
           EG  +D  +G  ED           +EGD   + DE++D+  D+R+V
Sbjct: 165 EGSEDDSEDGFDEDDMSGEFSSDDDQEGDEDGDDDEDEDEETDNRKV 211

>SMYD5_XENLA (Q6GPQ4) SET and MYND domain-containing protein 5|
          Length = 421

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 449 KGIGSKVVDMYKEAYDSIEIPKYVDTVTPRYKPKFDALLVEL-KEAEKTS 303
           +GIG+  +  +  A D++E+P       PR + K DAL+ +L K+ EK +
Sbjct: 253 QGIGTSSLSQWVHACDALELP-------PRDREKLDALIDQLYKDIEKVT 295


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,872,161
Number of Sequences: 219361
Number of extensions: 973685
Number of successful extensions: 3114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3108
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)