>FEN1B_ORYSA (Q75LI2) Flap endonuclease 1b (EC 3.1.-.-) (OsFEN-1b)|
          Length = 412

 Score =  123 bits (309), Expect = 4e-28
 Identities = 66/118 (55%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
 Frame = -2

Query: 583 NVCTEIPDFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAASDRYSPAGRAKLLTPV 404
           NVCT+IPDF WT  D+EGL+NFLA EN+FS DRV K+VEKIKAA+D++S  GR KLL PV
Sbjct: 288 NVCTDIPDFLWTPPDEEGLINFLAAENNFSPDRVVKSVEKIKAANDKFS-LGRGKLLAPV 346

Query: 403 ANLSGSTE---KESKCVLGASGQGLRSRTAVQVCXXXXXXXXXXXXXSKPLVMGRQSG 239
           ANL+GST    KE KC+LG  GQ +++R+ +QVC             SK  ++GR+SG
Sbjct: 347 ANLTGSTSTAGKEPKCILGGPGQVMKARSPLQVC--KSSSLNFIHDNSKAFMLGRRSG 402

>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)|
          Length = 380

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
 Frame = -2

Query: 583 NVCTEIPDFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAASDRYSPAGRAKLLTPV 404
           NV  +IP+ +W + D+EGLV FL  EN F+ DRV KA+EKIK A ++ S         PV
Sbjct: 288 NVTLDIPELKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGRLESFFKPV 347

Query: 403 ANLS------GSTEKESKCVLGASGQG 341
            + S       ++EK +K V     +G
Sbjct: 348 VSTSVPLKRKDTSEKPTKAVANKKTKG 374

>FEN_METAC (Q8TIY5) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 338

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = -2

Query: 574 TEIPDFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAAS 449
           TE  + +WT  D E L+ FL  EN FS+DRVEKA E++KAAS
Sbjct: 286 TEDYEIKWTKPDSEKLIKFLCEENDFSTDRVEKAAERLKAAS 327

>FEN_METKA (Q8TXU4) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 348

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 23/54 (42%), Positives = 30/54 (55%)
 Frame = -2

Query: 574 TEIPDFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAASDRYSPAGRAKLL 413
           T+  +  W   D+EGLV FL  E  FS DRV +AVE++K A       GR + L
Sbjct: 291 TDDYELDWDEPDEEGLVEFLVEERDFSEDRVRRAVERLKEALQELRKGGRQETL 344

>FEN_METMA (Q8PYF6) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 338

 Score = 45.8 bits (107), Expect = 9e-05
 Identities = 21/42 (50%), Positives = 28/42 (66%)
 Frame = -2

Query: 574 TEIPDFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAAS 449
           T+  + +W   D E L+NFL  EN FS DRV KA +++KAAS
Sbjct: 286 TDDYEIKWGKPDSEKLINFLCDENDFSEDRVVKAADRLKAAS 327

>FEN_METTH (O27670) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 328

 Score = 38.9 bits (89), Expect = 0.012
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 562 DFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAAS 449
           + +W   D EG++ FL  E+ FS DRV  A++K + AS
Sbjct: 281 EIRWRKPDVEGVIEFLCTEHGFSEDRVRAALKKFEGAS 318

>FEN_PYRAB (Q9V0P9) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 343

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = -2

Query: 574 TEIPDFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAA 452
           T+    +W   D+EG++ FL  E+ FS +RV+  +E++K A
Sbjct: 285 TDDYSLKWKEPDEEGIIRFLCDEHDFSEERVKNGLERLKKA 325

>FEN_PYRKO (Q5JGN0) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 340

 Score = 38.1 bits (87), Expect = 0.020
 Identities = 15/41 (36%), Positives = 27/41 (65%)
 Frame = -2

Query: 574 TEIPDFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAA 452
           T+  + +W   D+EG++ FL  E+ FS +RV+  +E++K A
Sbjct: 285 TDDYELKWREPDEEGILKFLCDEHDFSEERVKNGLERLKKA 325

>RAD2_SCHPO (P39750) DNA-repair protein rad2|
          Length = 380

 Score = 37.4 bits (85), Expect = 0.034
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -2

Query: 562 DFQWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAASDRYSPAGR 425
           + +W S D +G++ FL  E  F+ DRV+  + +++ AS +  P GR
Sbjct: 296 ELKWKSPDADGIIQFLVKEKGFNEDRVKLGINRLEKAS-KTIPQGR 340

>FEN_METJA (Q58839) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 326

 Score = 36.2 bits (82), Expect = 0.075
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = -2

Query: 541 DKEGLVNFLAFENSFSSDRVEKAVEKI 461
           DKEG++ FL  EN F+ DRV+K V+K+
Sbjct: 282 DKEGIIKFLVDENDFNYDRVKKHVDKL 308

>FEN_ARCFU (O29975) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 336

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 556 QWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKA 455
           ++   D E  + FL  E+ FS +RVEKA+EK+KA
Sbjct: 291 EFREPDFEKAIEFLCEEHDFSRERVEKALEKLKA 324

>KDSB_CHLPN (Q9Z8U9) 3-deoxy-manno-octulosonate cytidylyltransferase (EC|
           2.7.7.38) (CMP-KDO synthetase)
           (CMP-2-keto-3-deoxyoctulosonic acid synthetase) (CKS)
          Length = 254

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
 Frame = -2

Query: 535 EGLVNFLAFENSFSSDRVEKAVEKIKAASDRYSPAGRAKLLTPVANLSGS----TEKESK 368
           E +VN    E   +S+ V+  V+K++++ +       A+L+TPVA  +      TEK+ K
Sbjct: 99  EIIVNIQGDEPCLNSEVVDALVQKLRSSPE-------AELVTPVALTTDREEILTEKKVK 151

Query: 367 CVLGASGQGL 338
           CV  + G+ L
Sbjct: 152 CVFDSEGRAL 161

>FEN_NANEQ (P61942) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 339

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 12/38 (31%), Positives = 25/38 (65%)
 Frame = -2

Query: 556 QWTSADKEGLVNFLAFENSFSSDRVEKAVEKIKAASDR 443
           +W   +KE +   L  E+ F+ +RVE+A+E+++ A ++
Sbjct: 290 KWGKPNKELIFKILVEEHDFNPERVERAIERLEKALNK 327

>TNR26_MOUSE (P83626) Tumor necrosis factor receptor superfamily member 26|
           precursor (TNF receptor homolog 3)
          Length = 204

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 312 HTCTAV---LLLRPCPEAPKTHLDSFSVDPDRLATGVKSFARPAGEYLSLAAFI 464
           HTC++     ++R C     T  D F  +P +  +    F++P G  + +AAFI
Sbjct: 121 HTCSSCPDGRVVRKCNATMDTVCDKFDSEPGQSGSQCFCFSKPLGIVVIIAAFI 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,401,557
Number of Sequences: 219361
Number of extensions: 1378716
Number of successful extensions: 3233
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3231
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)