ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7p06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470320.1| Oryza sativa (japonica cultivar-group), mRNA 101 3e-18
2dbj|AB088391.1| Oryza sativa (japonica cultivar-group) OsFEN-1b ... 101 3e-18
3dbj|AK069540.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
4dbj|AK062149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
5dbj|AB080084.1| Oryza sativa (japonica cultivar-group) OsFEN-1b ... 101 3e-18
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.034
7gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 48 0.034
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.034
9gb|AC099644.6| Mus musculus chromosome 15, clone RP24-359B20, co... 44 0.52
10gb|AC159099.4| Mus musculus chromosome 15, clone RP24-132A22, co... 44 0.52
11gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell P... 44 0.52
12gb|AC099705.7| Mus musculus chromosome 1, clone RP23-256I3, comp... 42 2.1
13emb|AL033524.11|HS1090E8 Human DNA sequence from clone RP5-1090E... 42 2.1
14dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
15emb|AL670778.15| Mouse DNA sequence from clone RP23-234A24 on ch... 42 2.1
16dbj|AK064139.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
17emb|BX511038.6| Zebrafish DNA sequence from clone CH211-168I8 in... 42 2.1
18gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
19emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.1
20gb|BC023832.1| Mus musculus translocating chain-associating memb... 42 2.1
21gb|AC119953.15| Mus musculus chromosome 16, clone RP24-449J13, c... 40 8.2
22gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 40 8.2
23gb|AC159450.1| Trypanosoma brucei chromosome 7 clone RPCI93-5F10... 40 8.2
24gb|AC186559.1| Gasterosteus aculeatus clone VMRC26-231K03, compl... 40 8.2
25gb|AE013036.1| Thermoanaerobacter tengcongensis MB4, section 63 ... 40 8.2
26ref|XM_819776.1| Trypanosoma brucei TREU927 clone RPCI93-5F10 hy... 40 8.2
27ref|XM_819777.1| Trypanosoma brucei TREU927 clone RPCI93-5F10 hy... 40 8.2
28emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chro... 40 8.2
29emb|AL162574.14| Human DNA sequence from clone RP11-282A11 on ch... 40 8.2
30emb|AL050402.16|HSBA46E17 Human DNA sequence from clone RP11-46E... 40 8.2
31emb|CR378667.1| Photobacterium profundum SS9; segment 5/12 40 8.2
32gb|AC079942.12| Homo sapiens 3 BAC RP11-469L4 (Roswell Park Canc... 40 8.2
33gb|AC024154.2|AC024154 Homo sapiens chromosome 3 clone RP11-487J... 40 8.2
34gb|AC025920.12|AC025920 Homo sapiens chromosome N/A clone RP11-2... 40 8.2
35emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, ... 40 8.2
36emb|X64886.1|RCMVBCRNA Red Clover Mottle Virus genomic RNA seque... 40 8.2
37dbj|AP006357.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.2
38gb|AC024162.5| Homo sapiens chromosome 3 clone RP11-320K1 map 3p... 40 8.2 
>ref|XM_470320.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1726

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/217 (81%), Gaps = 4/217 (1%)
 Strand = Plus / Minus

                                                                        
Query: 383  tgtagatcctgataggttagctactggtgtcaaaagcttcgctcgccctgctggggaata 442
            ||||||||||| || ||| |||||||||| |||||||||| |||||||     ||||| |
Sbjct: 1164 tgtagatcctgttaagttcgctactggtgccaaaagcttccctcgcccaa---gggaaaa 1108

                                                                        
Query: 443  tctatcgctagcagcctttatcttttctactgccttttccactcgatcagaactgaaact 502
            | ||||  |||||||||||||||||||||| | |||| | |||||||||| ||||||| |
Sbjct: 1107 tttatcattagcagcctttatcttttctacagactttactactcgatcaggactgaaatt 1048

                                                                        
Query: 503  gttttcaaatgccaggaaattcacaaggccctctttgtctgctgaggtccactggaaatc 562
             |||||   |||||  || || | ||||||||| |  |||| || ||||||| |||| ||
Sbjct: 1047 attttcggctgccaaaaagtttataaggccctcctcatctggtggggtccacaggaagtc 988

                                                 
Query: 563  tggaatttctgtacaaacatttaggttgcttaaacaa 599
            |||||| |||||||||||  ||||||| |||||||||
Sbjct: 987  tggaatatctgtacaaac-gttaggttccttaaacaa 952
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>dbj|AB088391.1| Oryza sativa (japonica cultivar-group) OsFEN-1b mRNA for flap
            endonuclease-1b, complete cds
          Length = 1674

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/217 (81%), Gaps = 4/217 (1%)
 Strand = Plus / Minus

                                                                        
Query: 383  tgtagatcctgataggttagctactggtgtcaaaagcttcgctcgccctgctggggaata 442
            ||||||||||| || ||| |||||||||| |||||||||| |||||||     ||||| |
Sbjct: 1092 tgtagatcctgttaagttcgctactggtgccaaaagcttccctcgcccaa---gggaaaa 1036

                                                                        
Query: 443  tctatcgctagcagcctttatcttttctactgccttttccactcgatcagaactgaaact 502
            | ||||  |||||||||||||||||||||| | |||| | |||||||||| ||||||| |
Sbjct: 1035 tttatcattagcagcctttatcttttctacagactttactactcgatcaggactgaaatt 976

                                                                        
Query: 503  gttttcaaatgccaggaaattcacaaggccctctttgtctgctgaggtccactggaaatc 562
             |||||   |||||  || || | ||||||||| |  |||| || ||||||| |||| ||
Sbjct: 975  attttcggctgccaaaaagtttataaggccctcctcatctggtggggtccacaggaagtc 916

                                                 
Query: 563  tggaatttctgtacaaacatttaggttgcttaaacaa 599
            |||||| |||||||||||  ||||||| |||||||||
Sbjct: 915  tggaatatctgtacaaac-gttaggttccttaaacaa 880
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>dbj|AK069540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019F12, full
            insert sequence
          Length = 1994

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/217 (81%), Gaps = 4/217 (1%)
 Strand = Plus / Minus

                                                                        
Query: 383  tgtagatcctgataggttagctactggtgtcaaaagcttcgctcgccctgctggggaata 442
            ||||||||||| || ||| |||||||||| |||||||||| |||||||     ||||| |
Sbjct: 1556 tgtagatcctgttaagttcgctactggtgccaaaagcttccctcgcccaa---gggaaaa 1500

                                                                        
Query: 443  tctatcgctagcagcctttatcttttctactgccttttccactcgatcagaactgaaact 502
            | ||||  |||||||||||||||||||||| | |||| | |||||||||| ||||||| |
Sbjct: 1499 tttatcattagcagcctttatcttttctacagactttactactcgatcaggactgaaatt 1440

                                                                        
Query: 503  gttttcaaatgccaggaaattcacaaggccctctttgtctgctgaggtccactggaaatc 562
             |||||   |||||  || || | ||||||||| |  |||| || ||||||| |||| ||
Sbjct: 1439 attttcggctgccaaaaagtttataaggccctcctcatctggtggggtccacaggaagtc 1380

                                                 
Query: 563  tggaatttctgtacaaacatttaggttgcttaaacaa 599
            |||||| |||||||||||  ||||||| |||||||||
Sbjct: 1379 tggaatatctgtacaaac-gttaggttccttaaacaa 1344
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>dbj|AK062149.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H03, full
            insert sequence
          Length = 1578

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/217 (81%), Gaps = 4/217 (1%)
 Strand = Plus / Minus

                                                                        
Query: 383  tgtagatcctgataggttagctactggtgtcaaaagcttcgctcgccctgctggggaata 442
            ||||||||||| || ||| |||||||||| |||||||||| |||||||     ||||| |
Sbjct: 1164 tgtagatcctgttaagttcgctactggtgccaaaagcttccctcgcccaa---gggaaaa 1108

                                                                        
Query: 443  tctatcgctagcagcctttatcttttctactgccttttccactcgatcagaactgaaact 502
            | ||||  |||||||||||||||||||||| | |||| | |||||||||| ||||||| |
Sbjct: 1107 tttatcattagcagcctttatcttttctacagactttactactcgatcaggactgaaatt 1048

                                                                        
Query: 503  gttttcaaatgccaggaaattcacaaggccctctttgtctgctgaggtccactggaaatc 562
             |||||   |||||  || || | ||||||||| |  |||| || ||||||| |||| ||
Sbjct: 1047 attttcggctgccaaaaagtttataaggccctcctcatctggtggggtccacaggaagtc 988

                                                 
Query: 563  tggaatttctgtacaaacatttaggttgcttaaacaa 599
            |||||| |||||||||||  ||||||| |||||||||
Sbjct: 987  tggaatatctgtacaaac-gttaggttccttaaacaa 952
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>dbj|AB080084.1| Oryza sativa (japonica cultivar-group) OsFEN-1b mRNA for flap
            endonuclease-1b, complete cds
          Length = 1674

 Score =  101 bits (51), Expect = 3e-18
 Identities = 177/217 (81%), Gaps = 4/217 (1%)
 Strand = Plus / Minus

                                                                        
Query: 383  tgtagatcctgataggttagctactggtgtcaaaagcttcgctcgccctgctggggaata 442
            ||||||||||| || ||| |||||||||| |||||||||| |||||||     ||||| |
Sbjct: 1092 tgtagatcctgttaagttcgctactggtgccaaaagcttccctcgcccaa---gggaaaa 1036

                                                                        
Query: 443  tctatcgctagcagcctttatcttttctactgccttttccactcgatcagaactgaaact 502
            | ||||  |||||||||||||||||||||| | |||| | |||||||||| ||||||| |
Sbjct: 1035 tttatcattagcagcctttatcttttctacagactttactactcgatcaggactgaaatt 976

                                                                        
Query: 503  gttttcaaatgccaggaaattcacaaggccctctttgtctgctgaggtccactggaaatc 562
             |||||   |||||  || || | ||||||||| |  |||| || ||||||| |||| ||
Sbjct: 975  attttcggctgccaaaaagtttataaggccctcctcatctggtggggtccacaggaagtc 916

                                                 
Query: 563  tggaatttctgtacaaacatttaggttgcttaaacaa 599
            |||||| |||||||||||  ||||||| |||||||||
Sbjct: 915  tggaatatctgtacaaac-gttaggttccttaaacaa 880
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 383      tgtagatcctgataggttagctactggtgtcaaaagcttc 422
                ||||||||||| || ||| |||||||||| ||||||||||
Sbjct: 34747101 tgtagatcctgttaagttcgctactggtgccaaaagcttc 34747062



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 46/52 (88%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                    
Query: 548      ggtccactggaaatctggaatttctgtacaaacatttaggttgcttaaacaa 599
                ||||||| |||| |||||||| |||||||||||  ||||||| |||||||||
Sbjct: 34746687 ggtccacaggaagtctggaatatctgtacaaac-gttaggttccttaaacaa 34746637



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 451      tagcagcctttatcttttctac 472
                ||||||||||||||||||||||
Sbjct: 34746957 tagcagcctttatcttttctac 34746936
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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
              sequence
          Length = 164352

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 46/52 (88%), Gaps = 1/52 (1%)
 Strand = Plus / Plus

                                                                  
Query: 548    ggtccactggaaatctggaatttctgtacaaacatttaggttgcttaaacaa 599
              ||||||| |||| |||||||| |||||||||||  ||||||| |||||||||
Sbjct: 115963 ggtccacaggaagtctggaatatctgtacaaac-gttaggttccttaaacaa 116013



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 383    tgtagatcctgataggttagctactggtgtcaaaagcttc 422
              ||||||||||| || ||| |||||||||| ||||||||||
Sbjct: 115549 tgtagatcctgttaagttcgctactggtgccaaaagcttc 115588



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 451    tagcagcctttatcttttctac 472
              ||||||||||||||||||||||
Sbjct: 115693 tagcagcctttatcttttctac 115714
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 383      tgtagatcctgataggttagctactggtgtcaaaagcttc 422
                ||||||||||| || ||| |||||||||| ||||||||||
Sbjct: 34837173 tgtagatcctgttaagttcgctactggtgccaaaagcttc 34837134



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 46/52 (88%), Gaps = 1/52 (1%)
 Strand = Plus / Minus

                                                                    
Query: 548      ggtccactggaaatctggaatttctgtacaaacatttaggttgcttaaacaa 599
                ||||||| |||| |||||||| |||||||||||  ||||||| |||||||||
Sbjct: 34836759 ggtccacaggaagtctggaatatctgtacaaac-gttaggttccttaaacaa 34836709



 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 451      tagcagcctttatcttttctac 472
                ||||||||||||||||||||||
Sbjct: 34837029 tagcagcctttatcttttctac 34837008
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>gb|AC099644.6| Mus musculus chromosome 15, clone RP24-359B20, complete sequence
          Length = 135063

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 531   ccctctttgtctgctgaggtcc 552
             ||||||||||||||||||||||
Sbjct: 49241 ccctctttgtctgctgaggtcc 49220
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>gb|AC159099.4| Mus musculus chromosome 15, clone RP24-132A22, complete sequence
          Length = 147359

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 531   ccctctttgtctgctgaggtcc 552
             ||||||||||||||||||||||
Sbjct: 34718 ccctctttgtctgctgaggtcc 34739
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>gb|AC016950.8|AC016950 Homo sapiens 3 BAC RP11-239I11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 159217

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 343  cttgtcctgaagcacctaaaac 364
            ||||||||||||||||||||||
Sbjct: 2528 cttgtcctgaagcacctaaaac 2549
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>gb|AC099705.7| Mus musculus chromosome 1, clone RP23-256I3, complete sequence
          Length = 166683

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 281   accatatctgaaaccagagcttgag 305
             ||||||||||| |||||||||||||
Sbjct: 19518 accatatctgagaccagagcttgag 19542
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>emb|AL033524.11|HS1090E8 Human DNA sequence from clone RP5-1090E8 on chromosome 1p34.1-34.3
             Contains the 5' end of a novel gene, complete sequence
          Length = 101728

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 199   agatttaaatgaaagaaaagg 219
             |||||||||||||||||||||
Sbjct: 82967 agatttaaatgaaagaaaagg 82987
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 291      aaaccagagcttgagctactg 311
                |||||||||||||||||||||
Sbjct: 17459407 aaaccagagcttgagctactg 17459387
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>emb|AL670778.15| Mouse DNA sequence from clone RP23-234A24 on chromosome X, complete
              sequence
          Length = 201720

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     acattgaagctaattttctag 77
              |||||||||||||||||||||
Sbjct: 163235 acattgaagctaattttctag 163215
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>dbj|AK064139.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H12, full
           insert sequence
          Length = 2570

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 291 aaaccagagcttgagctactg 311
           |||||||||||||||||||||
Sbjct: 26  aaaccagagcttgagctactg 46
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>emb|BX511038.6| Zebrafish DNA sequence from clone CH211-168I8 in linkage group 4,
             complete sequence
          Length = 58637

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 565   gaatttctgtacaaacattta 585
             |||||||||||||||||||||
Sbjct: 21339 gaatttctgtacaaacattta 21319
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 291      aaaccagagcttgagctactg 311
                |||||||||||||||||||||
Sbjct: 17413778 aaaccagagcttgagctactg 17413758
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>emb|AL731763.1|CNS07YQA Oryza sativa chromosome 12, . BAC OSJNBa0090O14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129619

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   aaaccagagcttgagctactg 311
             |||||||||||||||||||||
Sbjct: 72999 aaaccagagcttgagctactg 73019
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>gb|BC023832.1| Mus musculus translocating chain-associating membrane protein 2,
           mRNA (cDNA clone IMAGE:5345295)
          Length = 3483

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 281 accatatctgaaaccagagcttgag 305
           ||||||||||| |||||||||||||
Sbjct: 303 accatatctgagaccagagcttgag 327
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>gb|AC119953.15| Mus musculus chromosome 16, clone RP24-449J13, complete sequence
          Length = 156473

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 521   attcacaaggccctctttgtctgc 544
             ||||||||||||||| ||||||||
Sbjct: 75217 attcacaaggccctccttgtctgc 75194
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 467     ttctactgccttttccactcgatcagaa 494
               |||||||||||||||| ||| |||||||
Sbjct: 1133141 ttctactgccttttccgctccatcagaa 1133168



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 467     ttctactgccttttccactcgatcagaa 494
               |||||||||||||||| ||| |||||||
Sbjct: 1126856 ttctactgccttttccgctccatcagaa 1126829
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>gb|AC159450.1| Trypanosoma brucei chromosome 7 clone RPCI93-5F10, complete sequence
          Length = 154291

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 467   ttctactgccttttccactcgatcagaa 494
             |||||||||||||||| ||| |||||||
Sbjct: 43634 ttctactgccttttccgctccatcagaa 43661



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 467   ttctactgccttttccactcgatcagaa 494
             |||||||||||||||| ||| |||||||
Sbjct: 37349 ttctactgccttttccgctccatcagaa 37322
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>gb|AC186559.1| Gasterosteus aculeatus clone VMRC26-231K03, complete sequence
          Length = 150088

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 199   agatttaaatgaaagaaaag 218
             ||||||||||||||||||||
Sbjct: 22663 agatttaaatgaaagaaaag 22682
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>gb|AE013036.1| Thermoanaerobacter tengcongensis MB4, section 63 of 244 of the
            complete genome
          Length = 12100

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 457  cctttatcttttctactgccttttccac 484
            ||||||||||||||| ||| ||||||||
Sbjct: 5363 cctttatcttttctattgctttttccac 5336
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>ref|XM_819776.1| Trypanosoma brucei TREU927 clone RPCI93-5F10 hypothetical protein
           (Tb927.7.4250) partial mRNA
          Length = 339

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 467 ttctactgccttttccactcgatcagaa 494
           |||||||||||||||| ||| |||||||
Sbjct: 69  ttctactgccttttccgctccatcagaa 42
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>ref|XM_819777.1| Trypanosoma brucei TREU927 clone RPCI93-5F10 hypothetical protein
           (Tb927.7.4240) partial mRNA
          Length = 339

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 467 ttctactgccttttccactcgatcagaa 494
           |||||||||||||||| ||| |||||||
Sbjct: 69  ttctactgccttttccgctccatcagaa 42
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>emb|AL731538.4| Human DNA sequence from clone RP11-457G5 on chromosome 10 Contains part
              of the gene for alpha-catenin-like protein (MGC26194)
              (VR22), complete sequence
          Length = 163119

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    cccatcaccaatggctttga 271
              ||||||||||||||||||||
Sbjct: 135987 cccatcaccaatggctttga 136006
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>emb|AL162574.14| Human DNA sequence from clone RP11-282A11 on chromosome 13 Contains a
              novel gene similar to peptidylprolyl isomerase A
              (cyclophilin A) (PPIA) (CYPA CYPH) and a CpG island,
              complete sequence
          Length = 184738

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 322    cagcagtcctgctcctcagacctt 345
              ||||||||||| ||||||||||||
Sbjct: 111386 cagcagtcctggtcctcagacctt 111409
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>emb|AL050402.16|HSBA46E17 Human DNA sequence from clone RP11-46E17 on chromosome 22, complete
              sequence
          Length = 109710

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    caactccagatttaaatgaa 211
              ||||||||||||||||||||
Sbjct: 109104 caactccagatttaaatgaa 109085
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>emb|CR378667.1| Photobacterium profundum SS9; segment 5/12
          Length = 349080

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    attcacttgacatattccaa 129
              ||||||||||||||||||||
Sbjct: 345986 attcacttgacatattccaa 345967
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>gb|AC079942.12| Homo sapiens 3 BAC RP11-469L4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171832

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    gaaagaaaaggtgggaggct 228
              ||||||||||||||||||||
Sbjct: 100900 gaaagaaaaggtgggaggct 100919
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>gb|AC024154.2|AC024154 Homo sapiens chromosome 3 clone RP11-487J12 map 3p, complete sequence
          Length = 204797

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 460    ttatcttttctactgccttt 479
              ||||||||||||||||||||
Sbjct: 188639 ttatcttttctactgccttt 188620
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>gb|AC025920.12|AC025920 Homo sapiens chromosome N/A clone RP11-277D17, complete sequence
          Length = 161489

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 460   ttatcttttctactgccttt 479
             ||||||||||||||||||||
Sbjct: 49598 ttatcttttctactgccttt 49579
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>emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, complete sequence
          Length = 174176

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 113    cacttgacatattccaagtg 132
              ||||||||||||||||||||
Sbjct: 100886 cacttgacatattccaagtg 100905
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>emb|X64886.1|RCMVBCRNA Red Clover Mottle Virus genomic RNA sequence for bottom component RNA
          Length = 6033

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 489  tcagaactgaaactgttttc 508
            ||||||||||||||||||||
Sbjct: 2937 tcagaactgaaactgttttc 2918
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>dbj|AP006357.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT36C13, TM0100a,
            complete sequence
          Length = 79575

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  aaatgaaagaaaaggtggga 224
            ||||||||||||||||||||
Sbjct: 3711 aaatgaaagaaaaggtggga 3692
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>gb|AC024162.5| Homo sapiens chromosome 3 clone RP11-320K1 map 3p, complete sequence
          Length = 173370

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 460  ttatcttttctactgccttt 479
            ||||||||||||||||||||
Sbjct: 8567 ttatcttttctactgccttt 8548


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,092,198
Number of Sequences: 3902068
Number of extensions: 6092198
Number of successful extensions: 117804
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117592
Number of HSP's gapped (non-prelim): 207
length of query: 602
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 579
effective length of database: 17,143,297,704
effective search space: 9925969370616
effective search space used: 9925969370616
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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