>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)|
          Length = 546

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
 Frame = -1

Query: 495 LTISYEIVCELFNCFESSTGLLRMKRSKATFPIICSSIQNLAERRFTYGHIAQLKYIMPE 316
           L   Y+++ E+F   ++  G+L  +    TF  +   +Q++  RRF   ++ Q+K + P 
Sbjct: 186 LPYKYQVLAEMFRSMDTIVGMLHNRSETPTFAKVQRGVQDMMRRRFEERNVGQIKTVYPA 245

Query: 315 TIVI-NKILLRDDKTCCMKPDLQVN---LLVDSVEDSAMQKGENCYFAMRRMFRQRLVDF 148
           +     +  +   K    + D Q+    LL    + +A Q   +     R++F Q+LV+ 
Sbjct: 246 SYRFRQERSVPTFKDGARRSDYQLTIEPLLEQEADGAAPQLTASRLLQRRQIFSQKLVEH 305

Query: 147 LHETS*VIYDHHVSFTLS 94
           + E       HH +F  S
Sbjct: 306 VKE-------HHKAFLAS 316

>CDT1_MOUSE (Q8R4E9) DNA replication factor Cdt1 (Double parked homolog) (DUP)|
           (Retroviral insertion site 2 protein)
          Length = 557

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
 Frame = -1

Query: 495 LTISYEIVCELFNCFESSTGLLRMKRSKATFPIICSSIQNLAERRFTYGHIAQLKYIMPE 316
           L   Y+++ E+F   ++   +L  +    TF  +   +Q +  +RF   ++ Q+K + P 
Sbjct: 199 LPYKYQVLVEMFRSMDTIVSMLHNRSETVTFAKVKQGVQEMMRKRFEERNVGQIKTVYPT 258

Query: 315 TIVI-NKILLRDDKTCCMKPDLQVNL--LVDSVEDSAMQKGENCYFAMRRMFRQRLVDFL 145
           +     +  +   K    + D Q+ +  L+      A Q    C    R++FRQ LV+ +
Sbjct: 259 SYRFRQECNVPTFKDSIKRSDYQLTIEPLLGQEAGGATQLTATCLLQRRQVFRQNLVERV 318

Query: 144 HE 139
            E
Sbjct: 319 KE 320

>GLYA_PROAC (Q6AAU3) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 491

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 247 HLKIRLHAAGLVVTQKDLVDDNSLGHNVLELCNMAIGKPPLSQVLNARA 393
           H  +R    G+V+T KD  DD   G      C M +G  PLS V+ A+A
Sbjct: 284 HKSLRGPRGGMVLTTKDYADDVDRG------CPMVLG-GPLSHVMAAKA 325

>FDHE_PHOLL (Q7MY03) Protein fdhE homolog|
          Length = 309

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 268 AAGLVVTQKDLVDDNSLGHNVLELCNMAI--GKPPLSQVLNARADNGECCLGSLHAEEPG 441
           +A +   Q+  + DN L   + ++   ++  GKPPL      R ++ +  L SL AE   
Sbjct: 59  SAQVAEAQQKALHDNPLKMEIADILEKSVIEGKPPLDCKTFQRTEHWQKLLHSLIAELLP 118

Query: 442 GALEAVEQLADNL 480
            A E V    DNL
Sbjct: 119 DASEHVNAALDNL 131

>V018_FOWPV (Q9J5I3) Putative ankyrin repeat protein FPV018|
          Length = 700

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 97  KCERYMMIIYNSGCFMKEVHEPLPEHPSHSKVTVFALLHRTVFN*IN 237
           +C R ++      CFM   H P+  H +H    VF  +    F+ IN
Sbjct: 509 ECTRVLLEHGADMCFMNRFHTPITIHKTHDNPAVFLAVIYLYFSVIN 555

>PPNK1_PROMA (Q7VE34) Probable inorganic polyphosphate/ATP-NAD kinase 1 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 1)
          Length = 307

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = -1

Query: 327 IMPETIVINKILLRDDKTCCMKP----DLQVNLLVDSVEDSAMQKGENCYFAMRRMFRQR 160
           I P ++    I++       +KP    + +VN+  D V  + MQKGE C     R   Q 
Sbjct: 215 ICPMSLSSRPIVVPAGSRLIIKPVGNKNQRVNIWQDGVSSALMQKGEQCVIEKARNHAQM 274

Query: 159 LV 154
           L+
Sbjct: 275 LI 276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,976,135
Number of Sequences: 219361
Number of extensions: 1375588
Number of successful extensions: 3446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3446
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4258037034
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)