ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474696.1| Oryza sativa (japonica cultivar-group), predic... 159 1e-35
2dbj|AK119406.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
4emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4,... 125 2e-25
5emb|AL731580.3|OSJN00227 Oryza sativa genomic DNA, chromosome 4,... 125 2e-25
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
7dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
8dbj|AK120391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
9dbj|AK106889.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
10gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, com... 44 0.47
11gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, compl... 44 0.47
12gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 44 0.47
13gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, compl... 42 1.9
14gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2... 42 1.9
15emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chr... 42 1.9
16emb|AL672309.8| Mouse DNA sequence from clone RP23-466J17 on chr... 42 1.9
17gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.3
18gb|AC004451.2| Homo sapiens PAC clone RP4-789N1 from 7, complete... 40 7.3
19gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Can... 40 7.3
20gb|AC119426.2| Homo sapiens chromosome 1 clone RP11-203A2, compl... 40 7.3
21gb|AC091932.2| Homo sapiens chromosome 5 clone RP11-315A16, comp... 40 7.3
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
23dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
24gb|AC002122.1|AC002122 Human unknown clone GS1-293J4 from 5p15.2... 40 7.3
25gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thali... 40 7.3 
>ref|XM_474696.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1767

 Score =  159 bits (80), Expect = 1e-35
 Identities = 200/240 (83%)
 Strand = Plus / Minus

                                                                       
Query: 232 atcaaccaataggttcacttgaagatccggcttcatgcagcaggtcttgtcgtcacgcaa 291
           ||||||||  |||||||| |||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 672 atcaaccaggaggttcacctgaagatcaggcttcatgcagcaagtcgtctcgtcacgcaa 613

                                                                       
Query: 292 aaggatcttgttgatgacaatagtctcgggcataatgtacttgagctgtgcaatatggcc 351
           ||||||||| ||||| ||||||  ||| ||||| |||||||| ||||| |||| ||||| 
Sbjct: 612 aaggatcttattgataacaataacctcaggcattatgtacttaagctgagcaagatggct 553

                                                                       
Query: 352 ataggtaaacctcctctcagccaagttttgaatgctagagcagataatggggaatgttgc 411
            |||||||||||||  |||| ||| |  || |||||||  || ||  ||||||| | |||
Sbjct: 552 gtaggtaaacctccgttcagacaaatgctggatgctagcacaaatgttggggaaggatgc 493

                                                                       
Query: 412 cttggatctcttcatgcggaggagcccggtggagctctcgaagcagttgaacaactcgca 471
           |||||||| |||||| ||||| | || |||||| ||||||||||| ||||| ||||||||
Sbjct: 492 cttggatcccttcatacggagcaaccgggtggaactctcgaagcaattgaagaactcgca 433
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>dbj|AK119406.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F01, full
           insert sequence
          Length = 2135

 Score =  159 bits (80), Expect = 1e-35
 Identities = 200/240 (83%)
 Strand = Plus / Minus

                                                                       
Query: 232 atcaaccaataggttcacttgaagatccggcttcatgcagcaggtcttgtcgtcacgcaa 291
           ||||||||  |||||||| |||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 743 atcaaccaggaggttcacctgaagatcaggcttcatgcagcaagtcgtctcgtcacgcaa 684

                                                                       
Query: 292 aaggatcttgttgatgacaatagtctcgggcataatgtacttgagctgtgcaatatggcc 351
           ||||||||| ||||| ||||||  ||| ||||| |||||||| ||||| |||| ||||| 
Sbjct: 683 aaggatcttattgataacaataacctcaggcattatgtacttaagctgagcaagatggct 624

                                                                       
Query: 352 ataggtaaacctcctctcagccaagttttgaatgctagagcagataatggggaatgttgc 411
            |||||||||||||  |||| ||| |  || |||||||  || ||  ||||||| | |||
Sbjct: 623 gtaggtaaacctccgttcagacaaatgctggatgctagcacaaatgttggggaaggatgc 564

                                                                       
Query: 412 cttggatctcttcatgcggaggagcccggtggagctctcgaagcagttgaacaactcgca 471
           |||||||| |||||| ||||| | || |||||| ||||||||||| ||||| ||||||||
Sbjct: 563 cttggatcccttcatacggagcaaccgggtggaactctcgaagcaattgaagaactcgca 504
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score =  125 bits (63), Expect = 2e-25
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                           
Query: 232     atcaaccaataggttcacttgaagatccggcttcatgcagcaggtcttgtcgtcacgcaa 291
               ||||||||  |||||||| |||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 5752277 atcaaccaggaggttcacctgaagatcaggcttcatgcagcaagtcgtctcgtcacgcaa 5752336

                                                                           
Query: 292     aaggatcttgttgatgacaatagtctcgggcataatgtacttgagctgtgcaatatggcc 351
               ||||||||| ||||| ||||||  ||| ||||| |||||||| ||||| |||| ||||| 
Sbjct: 5752337 aaggatcttattgataacaataacctcaggcattatgtacttaagctgagcaagatggct 5752396

                              
Query: 352     ataggtaaacctcct 366
                ||||||||||||||
Sbjct: 5752397 gtaggtaaacctcct 5752411



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                           
Query: 399     tggggaatgttgccttggatctcttcatgcggaggagcccggtggagctctcgaagcagt 458
               ||||||| | ||||||||||| |||||| ||||| | || |||||| ||||||||||| |
Sbjct: 5752534 tggggaaggatgccttggatcccttcatacggagcaaccgggtggaactctcgaagcaat 5752593

                                             
Query: 459     tgaacaactcgcagacaatctcatagctga 488
               |||| |||||||| |  ||||| |||||||
Sbjct: 5752594 tgaagaactcgcacagcatctcgtagctga 5752623
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>emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003A12,
             complete sequence
          Length = 164425

 Score =  125 bits (63), Expect = 2e-25
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                         
Query: 232   atcaaccaataggttcacttgaagatccggcttcatgcagcaggtcttgtcgtcacgcaa 291
             ||||||||  |||||||| |||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 47263 atcaaccaggaggttcacctgaagatcaggcttcatgcagcaagtcgtctcgtcacgcaa 47322

                                                                         
Query: 292   aaggatcttgttgatgacaatagtctcgggcataatgtacttgagctgtgcaatatggcc 351
             ||||||||| ||||| ||||||  ||| ||||| |||||||| ||||| |||| ||||| 
Sbjct: 47323 aaggatcttattgataacaataacctcaggcattatgtacttaagctgagcaagatggct 47382

                            
Query: 352   ataggtaaacctcct 366
              ||||||||||||||
Sbjct: 47383 gtaggtaaacctcct 47397



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                         
Query: 399   tggggaatgttgccttggatctcttcatgcggaggagcccggtggagctctcgaagcagt 458
             ||||||| | ||||||||||| |||||| ||||| | || |||||| ||||||||||| |
Sbjct: 47520 tggggaaggatgccttggatcccttcatacggagcaaccgggtggaactctcgaagcaat 47579

                                           
Query: 459   tgaacaactcgcagacaatctcatagctga 488
             |||| |||||||| |  ||||| |||||||
Sbjct: 47580 tgaagaactcgcacagcatctcgtagctga 47609
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>emb|AL731580.3|OSJN00227 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0001M07,
             complete sequence
          Length = 114335

 Score =  125 bits (63), Expect = 2e-25
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                         
Query: 232   atcaaccaataggttcacttgaagatccggcttcatgcagcaggtcttgtcgtcacgcaa 291
             ||||||||  |||||||| |||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 96082 atcaaccaggaggttcacctgaagatcaggcttcatgcagcaagtcgtctcgtcacgcaa 96141

                                                                         
Query: 292   aaggatcttgttgatgacaatagtctcgggcataatgtacttgagctgtgcaatatggcc 351
             ||||||||| ||||| ||||||  ||| ||||| |||||||| ||||| |||| ||||| 
Sbjct: 96142 aaggatcttattgataacaataacctcaggcattatgtacttaagctgagcaagatggct 96201

                            
Query: 352   ataggtaaacctcct 366
              ||||||||||||||
Sbjct: 96202 gtaggtaaacctcct 96216



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 76/90 (84%)
 Strand = Plus / Plus

                                                                         
Query: 399   tggggaatgttgccttggatctcttcatgcggaggagcccggtggagctctcgaagcagt 458
             ||||||| | ||||||||||| |||||| ||||| | || |||||| ||||||||||| |
Sbjct: 96339 tggggaaggatgccttggatcccttcatacggagcaaccgggtggaactctcgaagcaat 96398

                                           
Query: 459   tgaacaactcgcagacaatctcatagctga 488
             |||| |||||||| |  ||||| |||||||
Sbjct: 96399 tgaagaactcgcacagcatctcgtagctga 96428
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                           
Query: 399     tggggaatgttgccttggatctcttcatgcggaggagcccggtggagctctcgaagcagt 458
               ||||||| | ||||||||||| |||||| || || | |  |||||| ||||||||||| |
Sbjct: 4455592 tggggaaggatgccttggatcccttcatacgaagcaactgggtggaactctcgaagcaat 4455651

                                             
Query: 459     tgaacaactcgcagacaatctcatagctga 488
               |||| ||||||||||  ||||| |||||||
Sbjct: 4455652 tgaagaactcgcagagcatctcgtagctga 4455681
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>dbj|AP002484.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0489A01
          Length = 137174

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 75/90 (83%)
 Strand = Plus / Plus

                                                                          
Query: 399    tggggaatgttgccttggatctcttcatgcggaggagcccggtggagctctcgaagcagt 458
              ||||||| | ||||||||||| |||||| || || | |  |||||| ||||||||||| |
Sbjct: 115674 tggggaaggatgccttggatcccttcatacgaagcaactgggtggaactctcgaagcaat 115733

                                            
Query: 459    tgaacaactcgcagacaatctcatagctga 488
              |||| ||||||||||  ||||| |||||||
Sbjct: 115734 tgaagaactcgcagagcatctcgtagctga 115763
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>dbj|AK120391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K17, full
           insert sequence
          Length = 4154

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                       
Query: 399 tggggaatgttgccttggatctcttcatgcggaggagcccggtggagctctcgaagcagt 458
           ||||||| | ||||||||||| |||||| || || | |  |||||| ||||||||||| |
Sbjct: 889 tggggaaggatgccttggatcccttcatacgaagcaactgggtggatctctcgaagcaat 830

                                       
Query: 459 tgaacaactcgcagacaatctcatagct 486
           |||| ||||||||||  ||||| |||||
Sbjct: 829 tgaagaactcgcagagcatctcgtagct 802
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>dbj|AK106889.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-G03, full
           insert sequence
          Length = 1868

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                       
Query: 399 tggggaatgttgccttggatctcttcatgcggaggagcccggtggagctctcgaagcagt 458
           ||||||| | ||||||||||| |||||| || || | |  |||||| ||||||||||| |
Sbjct: 488 tggggaaggatgccttggatcccttcatacgaagcaactgggtggaactctcgaagcaat 429

                                       
Query: 459 tgaacaactcgcagacaatctcatagct 486
           |||| ||||||||||  ||||| |||||
Sbjct: 428 tgaagaactcgcagagcatctcgtagct 401
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>gb|AC101277.16| Mus musculus chromosome 1, clone RP23-101P2, complete sequence
          Length = 207021

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 510   ttagaaaacagaactattgcag 531
             ||||||||||||||||||||||
Sbjct: 93033 ttagaaaacagaactattgcag 93054
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>gb|AC146437.3| Pan troglodytes BAC clone RP43-15J3 from 7, complete sequence
          Length = 163637

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 510   ttagaaaacagaactattgcag 531
             ||||||||||||||||||||||
Sbjct: 42013 ttagaaaacagaactattgcag 41992
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 509   attagaaaacagaactattgcagtaa 534
             ||||||||||| ||||||||||||||
Sbjct: 25146 attagaaaacaaaactattgcagtaa 25121
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>gb|AC118563.1| Homo sapiens chromosome 5 clone CTD-2243F8, complete sequence
          Length = 105027

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   aaacagaactattgcagtaaa 535
             |||||||||||||||||||||
Sbjct: 68920 aaacagaactattgcagtaaa 68900
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>gb|AC010346.6|AC010346 Homo sapiens chromosome 5 clone CITB-H1_2018B2, complete sequence
          Length = 109626

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 515   aaacagaactattgcagtaaa 535
             |||||||||||||||||||||
Sbjct: 24823 aaacagaactattgcagtaaa 24803
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>emb|AL807831.6| Mouse DNA sequence from clone RP23-146I17 on chromosome X, complete
            sequence
          Length = 203118

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 103  gaaagatacatgatgatcatatata 127
            |||||||||||||| ||||||||||
Sbjct: 2151 gaaagatacatgattatcatatata 2127
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>emb|AL672309.8| Mouse DNA sequence from clone RP23-466J17 on chromosome X, complete
            sequence
          Length = 81843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 510  ttagaaaacagaactattgca 530
            |||||||||||||||||||||
Sbjct: 3863 ttagaaaacagaactattgca 3883
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                           
Query: 152     tccacgagcctttgcctgaacatccttc 179
               ||||||||| ||||||||||||||||||
Sbjct: 1616269 tccacgagc-tttgcctgaacatccttc 1616243
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>gb|AC004451.2| Homo sapiens PAC clone RP4-789N1 from 7, complete sequence
          Length = 108642

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 512   agaaaacagaactattgcag 531
             ||||||||||||||||||||
Sbjct: 47257 agaaaacagaactattgcag 47238
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>gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175447

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    attaactactgtatgctgaaagtg 101
             ||||| ||||||||||||||||||
Sbjct: 81536 attaaatactgtatgctgaaagtg 81513
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>gb|AC119426.2| Homo sapiens chromosome 1 clone RP11-203A2, complete sequence
          Length = 52339

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   catagcaaagtaacagtttt 200
             ||||||||||||||||||||
Sbjct: 21225 catagcaaagtaacagtttt 21244
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>gb|AC091932.2| Homo sapiens chromosome 5 clone RP11-315A16, complete sequence
          Length = 167799

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   tcgcactgtcttcaactgaa 232
             ||||||||||||||||||||
Sbjct: 97480 tcgcactgtcttcaactgaa 97499
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    atacatgatgatcatatata 127
              ||||||||||||||||||||
Sbjct: 119685 atacatgatgatcatatata 119666
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1026C12
          Length = 170240

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    atacatgatgatcatatata 127
              ||||||||||||||||||||
Sbjct: 118984 atacatgatgatcatatata 118965
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>gb|AC002122.1|AC002122 Human unknown clone GS1-293J4 from 5p15.2, complete sequence
          Length = 79931

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   tcgcactgtcttcaactgaa 232
             ||||||||||||||||||||
Sbjct: 16946 tcgcactgtcttcaactgaa 16927
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>gb|AC007519.2|F16N3 Sequence of BAC F16N3 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 171769

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   tcttcaactgaatcaaccaa 240
             ||||||||||||||||||||
Sbjct: 31386 tcttcaactgaatcaaccaa 31405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,283,259
Number of Sequences: 3902068
Number of extensions: 4283259
Number of successful extensions: 80250
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80098
Number of HSP's gapped (non-prelim): 147
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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