ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase 52 1e-04
2emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene 52 1e-04
3emb|AL390741.12| Human DNA sequence from clone RP11-38F19 on chr... 36 6.4
4emb|BX649413.8| Mouse DNA sequence from clone RP23-193P21 on chr... 36 6.4

>emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase
          Length = 1710

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Minus

                                                             
Query: 1    tcactgcatggcaggcctaactatagnaacatcgcctgtngcgacgagg 49
            ||||||||||| |||||||||||||| |||||||||||| | |||||||
Sbjct: 1626 tcactgcatgg-aggcctaactatag-aacatcgcctgtagtgacgagg 1580



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>emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene
          Length = 4473

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 45/49 (91%), Gaps = 2/49 (4%)
 Strand = Plus / Minus

                                                             
Query: 1    tcactgcatggcaggcctaactatagnaacatcgcctgtngcgacgagg 49
            ||||||||||| |||||||||||||| |||||||||||| | |||||||
Sbjct: 4389 tcactgcatgg-aggcctaactatag-aacatcgcctgtagtgacgagg 4343



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>emb|AL390741.12| Human DNA sequence from clone RP11-38F19 on chromosome 6 Contains the
              DSCR1L1 gene for Down syndrome critical region gene 1-like
              1 (MCIP2, ZAKI-4) and a novel gene, complete sequence
          Length = 128461

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      tcactgcatggcaggcct 18
              ||||||||||||||||||
Sbjct: 125160 tcactgcatggcaggcct 125143



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>emb|BX649413.8| Mouse DNA sequence from clone RP23-193P21 on chromosome 4 Contains the 5'
              end of the Dbccr1 gene for deleted in bladder cancer 1,
              complete sequence
          Length = 186197

 Score = 36.2 bits (18), Expect = 6.4
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 3      actgcatggcaggcctaa 20
              ||||||||||||||||||
Sbjct: 153426 actgcatggcaggcctaa 153409


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,844
Number of Sequences: 3902068
Number of extensions: 110844
Number of successful extensions: 36147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 36143
Number of HSP's gapped (non-prelim): 4
length of query: 49
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 29
effective length of database: 17,155,003,908
effective search space: 497495113332
effective search space used: 497495113332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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