| Clone Name | rbags8d22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY534122.1|SEG_AY534122S1 Aegilops tauschii transposon XJ, complete sequence; putative Bowman Birk trypsin inhibitor gene, complete cds; Stowaway MITE, complete sequence; and insertion sequences xl_tt1a and xl_tt1b putative ripening related protein genes, complete cds Length = 26073 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 280 ggcagctcttgcaggtcggagcacactgctcgacctcgtc 319 ||||| ||||||||||||| || ||||||||||||||||| Sbjct: 8897 ggcaggtcttgcaggtcggggcgcactgctcgacctcgtc 8858
>ref|NM_009900.1| Mus musculus chloride channel 2 (Clcn2), mRNA Length = 3148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 1112 ggctggcagctcttgcaggtc 1092
>dbj|AK141656.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030011H03 product:chloride channel 2, full insert sequence Length = 3945 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 2270 ggctggcagctcttgcaggtc 2250
>dbj|AK171231.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630312D12 product:chloride channel 2, full insert sequence Length = 2934 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 928 ggctggcagctcttgcaggtc 908
>dbj|AK155104.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630201N06 product:chloride channel 2, full insert sequence Length = 2934 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 928 ggctggcagctcttgcaggtc 908
>dbj|AK165000.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130114N01 product:chloride channel 2, full insert sequence Length = 3513 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 1162 ggctggcagctcttgcaggtc 1142
>dbj|AK172148.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830048E20 product:chloride channel 2, full insert sequence Length = 3757 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 1617 ggctggcagctcttgcaggtc 1597
>gb|AF097415.1|AF097415 Mus musculus chloride channel CLC-2 (Clcn2) mRNA, complete cds Length = 3148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 1112 ggctggcagctcttgcaggtc 1092
>gb|AF139724.1|AF139724 Mus musculus voltage-regulated and volume-regulated chloride channel ClC-2 mRNA, complete cds Length = 3107 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 1063 ggctggcagctcttgcaggtc 1043
>emb|CT010490.10| Mouse DNA sequence from clone RP23-148P12 on chromosome 16, complete sequence Length = 206348 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 276 ggctggcagctcttgcaggtc 296 ||||||||||||||||||||| Sbjct: 57146 ggctggcagctcttgcaggtc 57166
>gb|AC121857.2| Mus musculus BAC clone RP24-98A9 from 1, complete sequence Length = 171124 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 gcctctcttcgtctcccccc 401 |||||||||||||||||||| Sbjct: 122749 gcctctcttcgtctcccccc 122768
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gcacactgctcgacctcgtc 319 |||||||||||||||||||| Sbjct: 92006 gcacactgctcgacctcgtc 91987
>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence Length = 166114 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 catttccacggcctctcttc 391 |||||||||||||||||||| Sbjct: 88381 catttccacggcctctcttc 88362
>gb|AC153649.4| Mus musculus BAC clone RP24-93B8 from chromosome 1, complete sequence Length = 162838 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 gcctctcttcgtctcccccc 401 |||||||||||||||||||| Sbjct: 152173 gcctctcttcgtctcccccc 152192
>gb|AY103562.1| Zea mays PCO085487 mRNA sequence Length = 2258 Score = 40.1 bits (20), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 365 gtcgcancatttccacggcctct 387 |||||| |||||||||||||||| Sbjct: 2199 gtcgcagcatttccacggcctct 2177
>gb|AY104323.1| Zea mays PCO085485 mRNA sequence Length = 1303 Score = 40.1 bits (20), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 365 gtcgcancatttccacggcctct 387 |||||| |||||||||||||||| Sbjct: 579 gtcgcagcatttccacggcctct 557 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,941,030 Number of Sequences: 3902068 Number of extensions: 1941030 Number of successful extensions: 31760 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31741 Number of HSP's gapped (non-prelim): 19 length of query: 453 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 431 effective length of database: 17,147,199,772 effective search space: 7390443101732 effective search space used: 7390443101732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)