ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7o21 |
|---|---|
| Clone Library Name | barley_pub |
>SNAG_ARATH (Q9SPE5) Gamma-soluble NSF attachment protein (Gamma-SNAP)| (N-ethylmaleimide-sensitive factor attachment protein, gamma) Length = 291 Score = 181 bits (459), Expect = 2e-45 Identities = 83/124 (66%), Positives = 106/124 (85%) Frame = -1 Query: 656 AAASLYVKLEKYSDAAAFHLRLGSAADKCNAVNSQCKAYLSAIIIYLYAHDFQQAQKCYN 477 A A++Y+KLEK++DAA F LRLG AADKC+A NSQCKAYLSAII+YLYAHD QQA+KCYN Sbjct: 155 ACANVYIKLEKFTDAATFFLRLGVAADKCDATNSQCKAYLSAIILYLYAHDLQQAEKCYN 214 Query: 476 DCSGVQGFLNSDQNRCAMKLLSAYEEGDAEEIKRAAQSTAINHLDHVVIRLARKLPTGDL 297 DCS + FL SDQ+R A +LL+AY EGD EEIK+ A ++ +++LDH++I+LARKLPTGD+ Sbjct: 215 DCSQIDAFLKSDQSRSASRLLTAYNEGDIEEIKKVASASTVSNLDHMIIKLARKLPTGDV 274 Query: 296 QAIK 285 AI+ Sbjct: 275 TAIQ 278
>YQBA_BACSU (P45917) Hypothetical protein yqbA| Length = 510 Score = 31.2 bits (69), Expect = 2.8 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -1 Query: 449 NSDQNRCAMKLLSAYEEGDAEEIKRAAQSTAINHLDHVVIRLARKLPTGDLQAI 288 N D+ R A +L Y G+A++ RA TA + V + RKL TG L A+ Sbjct: 350 NRDKIRSAFRLPPLYT-GEAQDYNRATADTARKITEEQVFQPERKLITGKLNAL 402
>IF2_STAAW (Q8NWZ1) Translation initiation factor IF-2| Length = 705 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = -1 Query: 599 LRLGSAADKCNAVNSQC--KAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCA 426 + +G ADK N +S+ K +L I+ + Q+ + D GV+ N Sbjct: 132 ITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEED 191 Query: 425 MKLLSAYEEGDAEEIKRAAQSTAINHLDH 339 + + E+ D E I+R A T + H+DH Sbjct: 192 LSIYFEDEKDDPEAIERPAVVTIMGHVDH 220
>IF2_STAAS (Q6G9U4) Translation initiation factor IF-2| Length = 705 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = -1 Query: 599 LRLGSAADKCNAVNSQC--KAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCA 426 + +G ADK N +S+ K +L I+ + Q+ + D GV+ N Sbjct: 132 ITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEED 191 Query: 425 MKLLSAYEEGDAEEIKRAAQSTAINHLDH 339 + + E+ D E I+R A T + H+DH Sbjct: 192 LSIYFEDEKDDPEAIERPAVVTIMGHVDH 220
>IF2_STAAR (Q6GHG6) Translation initiation factor IF-2| Length = 705 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = -1 Query: 599 LRLGSAADKCNAVNSQC--KAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCA 426 + +G ADK N +S+ K +L I+ + Q+ + D GV+ N Sbjct: 132 ITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEED 191 Query: 425 MKLLSAYEEGDAEEIKRAAQSTAINHLDH 339 + + E+ D E I+R A T + H+DH Sbjct: 192 LSIYFEDEKDDPEAIERPAVVTIMGHVDH 220
>IF2_STAAN (P65134) Translation initiation factor IF-2| Length = 705 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = -1 Query: 599 LRLGSAADKCNAVNSQC--KAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCA 426 + +G ADK N +S+ K +L I+ + Q+ + D GV+ N Sbjct: 132 ITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEED 191 Query: 425 MKLLSAYEEGDAEEIKRAAQSTAINHLDH 339 + + E+ D E I+R A T + H+DH Sbjct: 192 LSIYFEDEKDDPEAIERPAVVTIMGHVDH 220
>IF2_STAAM (P65133) Translation initiation factor IF-2| Length = 705 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = -1 Query: 599 LRLGSAADKCNAVNSQC--KAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCA 426 + +G ADK N +S+ K +L I+ + Q+ + D GV+ N Sbjct: 132 ITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEED 191 Query: 425 MKLLSAYEEGDAEEIKRAAQSTAINHLDH 339 + + E+ D E I+R A T + H+DH Sbjct: 192 LSIYFEDEKDDPEAIERPAVVTIMGHVDH 220
>IF2_STAAC (Q5HGG2) Translation initiation factor IF-2| Length = 705 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = -1 Query: 599 LRLGSAADKCNAVNSQC--KAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCA 426 + +G ADK N +S+ K +L I+ + Q+ + D GV+ N Sbjct: 132 ITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEED 191 Query: 425 MKLLSAYEEGDAEEIKRAAQSTAINHLDH 339 + + E+ D E I+R A T + H+DH Sbjct: 192 LSIYFEDEKDDPEAIERPAVVTIMGHVDH 220
>IF2_STAAB (Q2YXP7) Translation initiation factor IF-2| Length = 705 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%) Frame = -1 Query: 599 LRLGSAADKCNAVNSQC--KAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCA 426 + +G ADK N +S+ K +L I+ + Q+ + D GV+ N Sbjct: 132 ITVGEFADKLNVESSEIIKKLFLLGIVANINQSLNQETIELIADDYGVEVEEEVVINEED 191 Query: 425 MKLLSAYEEGDAEEIKRAAQSTAINHLDH 339 + + E+ D E I+R A T + H+DH Sbjct: 192 LSIYFEDEKDDPEAIERPAVVTIMGHVDH 220
>GIDB_VIBPA (Q87K99) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited| division protein B) Length = 211 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 392 HHLPHKQTTVSLHIDSGHYSGSLEPLSNHCSISELV 499 HHLP +Q V L + H ++ L CS++E++ Sbjct: 155 HHLPKEQDGVFLALKGQHPKDEMDLLPEWCSVTEII 190
>RINI_PIG (P10775) Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor| 1) Length = 456 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/70 (22%), Positives = 30/70 (42%) Frame = -1 Query: 572 CNAVNSQCKAYLSAIIIYLYAHDFQQAQKCYNDCSGVQGFLNSDQNRCAMKLLSAYEEGD 393 C NS C + S ++ + + C D +Q + +Q CA++ L Y+ Sbjct: 375 CEVTNSGCSSLASLLLANRSLRELDLSNNCVGDPGVLQLLGSLEQPGCALEQLVLYDTYW 434 Query: 392 AEEIKRAAQS 363 EE++ Q+ Sbjct: 435 TEEVEDRLQA 444 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,150,670 Number of Sequences: 219361 Number of extensions: 1655392 Number of successful extensions: 3805 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3753 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3805 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
