>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = +3

Query: 24   PXPETSRPQQNDSKSTPHQPHPSLLPSITYSKLNDNQQTQNTPPTSNHASDKYNHLRKRS 203
            P P T+   Q+ + S    P PS  PS   S  + +   ++ PP  + AS          
Sbjct: 3602 PDPSTASTSQSAAHSNDSPPPPSAAPS---SSASPHASRKSWPPVGSRASAAKPPSFPPL 3658

Query: 204  RRPXQVTRSSCS*LGSRP 257
                 VT SSCS  G +P
Sbjct: 3659 SSSSTVTSSSCSTSGVQP 3676

>NFH_HUMAN (P12036) Neurofilament triplet H protein (200 kDa neurofilament|
            protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1026

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = -1

Query: 497  VKAPRKKITAVKDEAKAPRKKI-----TADVVCKDDGRSESGVTFDSLECHQDVGCVTPS 333
            VK+P K  + +K++AKAP K+I         V +++   E  V     +  ++    TP 
Sbjct: 799  VKSPEKAKSPLKEDAKAPEKEIPKKEEVKSPVKEEEKPQEVKVKEPPKKAEEEKAPATP- 857

Query: 332  KPEPKKKRKWVEARSPDCVASRLRSRSAP 246
            K E KK  K  EA   +    ++  +  P
Sbjct: 858  KTEEKKDSKKEEAPKKEAPKPKVEEKKEP 886

>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 22/54 (40%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +3

Query: 6   YTNTYKP---XPETSRPQQNDSKSTPHQPHPSLLPSITYSKLNDNQQTQNTPPT 158
           YT T KP    P TS P     K TPH P+P   P  TY           TPPT
Sbjct: 212 YTPTPKPPATKPPTSTPTH--PKPTPHTPYPQAHPP-TYKPAPKPSPPAPTPPT 262

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = -1

Query: 494 KAPRKKITAVKDEAKAPRKKITA------DVVCKDDGRSESGVTFDSLECHQDVGCVTPS 333
           ++PR + T  +  + AP KK  +       V  KD    E+  T D L+  +      P 
Sbjct: 199 RSPRHR-TKSRSPSPAPEKKEKSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEPK 257

Query: 332 KPEPKKKRKWVEARSPDCVASRLRSRSAPKS 240
           +P P+K  K  + ++     SR +SRS  +S
Sbjct: 258 EPSPEKNSKKEKEKTRPRSRSRSKSRSRTRS 288

>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
            protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 26/85 (30%), Positives = 40/85 (47%)
 Frame = -1

Query: 497  VKAPRKKITAVKDEAKAPRKKITADVVCKDDGRSESGVTFDSLECHQDVGCVTPSKPEPK 318
            VK+P K  + +K+EAK+P K  T DV      +S    T    E  +     +P + +  
Sbjct: 800  VKSPEKAKSPMKEEAKSPEKAKTLDV------KSPEAKTPAKEEAKRPADIRSPEQVKSP 853

Query: 317  KKRKWVEARSPDCVASRLRSRSAPK 243
             K    EA+SP+   +R   + APK
Sbjct: 854  AKE---EAKSPEKEETR-TEKVAPK 874

>SEN2_NEUCR (Q9P6Y2) Probable tRNA-splicing endonuclease subunit sen-2 (EC|
           3.1.27.9) (tRNA-intron endonuclease sen-2)
          Length = 633

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 30  PETSRPQQNDSKSTPHQPHPSLLPSITYSKLNDNQQTQNTPPTS 161
           PETS  + NDS S+   PH   LP        D+Q TQ   P +
Sbjct: 344 PETSATEANDSTSSSSPPHTDGLP--------DSQPTQENVPAT 379

>HSLU_VIBCH (Q9KNQ7) ATP-dependent hsl protease ATP-binding subunit hslU|
          Length = 443

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +1

Query: 190 CAKGVV-GPXKSQDQVAHDLGADRERSLLATQSGLLASTHFLFFFGSGLDGVTQPT 354
           C +G V GP  S++ V  DL    E S ++T+ G++ + H L F  SG   V +P+
Sbjct: 262 CKRGEVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDHIL-FIASGAFQVAKPS 316

>PER60_ARATH (Q9FMR0) Peroxidase 60 precursor (EC 1.11.1.7) (Atperox P60)|
           (ATP14a)
          Length = 331

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 22/78 (28%), Positives = 33/78 (42%)
 Frame = -1

Query: 503 VLVKAPRKKITAVKDEAKAPRKKITADVVCKDDGRSESGVTFDSLECHQDVGCVTPSKPE 324
           +LV  P  K+T  +  AK  ++K++ + +    G    GVT  S    +        KP+
Sbjct: 156 LLVDLPSPKMTVAETAAKFDQRKLSLNDMVLLLGGHTIGVTHCSFIMDRLYNFQNTQKPD 215

Query: 323 PKKKRKWVEARSPDCVAS 270
           P    K VE  S  C  S
Sbjct: 216 PSMDPKLVEELSAKCPKS 233

>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1|
          Length = 458

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 30  PETSRPQQNDSKSTPHQPHPSLLPSITYSKLNDNQQTQNTPPTSNHASDKYNHLRKRSR 206
           P   + Q++DS ++P  P PS        K ND+  +   P  + H SDK N   +R R
Sbjct: 104 PPRGKRQRHDSDNSP--PRPS-------RKRNDSDNSPPRPSRNRHDSDKDNSPPRRRR 153

>SARM1_DROME (Q6IDD9) Sterile alpha and TIR motif-containing protein 1 (Tir-1|
            homolog)
          Length = 1360

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 30   PETSRPQQNDSKSTPHQPHPSLLPSITYSKLNDNQQTQNTPPTSNHASDK 179
            P T +PQ+ D+ S+   P P   P     ++ + Q  +    T +   D+
Sbjct: 1250 PMTPQPQRRDTSSSSKSPTPERPPQPAMERVRERQSPEGVSATESEREDQ 1299

>CTK1_YEAST (Q03957) CTD kinase subunit alpha (EC 2.7.11.23) (CTD kinase 58 kDa|
           subunit) (CTDK-I alpha subunit)
          Length = 528

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 15  TYKPXPETSRPQQNDSKSTPHQPHPSLLPSITYSKLNDNQQTQNTPPTSNHASDKYNHLR 194
           +Y+  P++ +  +  ++   H P      S+  S+ N++  T N      HAS  YNH  
Sbjct: 101 SYENRPKSIKRDETKAEFLSHLPKGP--KSVEKSRYNNSSNTSNDIKNGYHASKYYNHKG 158

Query: 195 KRSR 206
           +  R
Sbjct: 159 QEGR 162

>AMDR_ASPOR (Q06157) Acetamidase regulatory protein|
          Length = 775

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  SRPQQNDSKSTPHQPHPSLLPSITYSKLNDNQQTQNTPP 155
           S   QN + + P  PHP+  P++  +    + QT+  PP
Sbjct: 639 STHDQNKNTTNPSNPHPTPTPNLNSNTTIQSAQTEPRPP 677

>MADCA_MOUSE (Q61826) Mucosal addressin cell adhesion molecule 1 precursor|
           (MAdCAM-1) (mMAdCAM-1)
          Length = 405

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 356 PGDIPENQMSPRTRSCHHPCRP--HQQ*SSSW 445
           P   P  ++SPRT S   PCRP  HQ   + W
Sbjct: 258 PSAPPYPKLSPRTLSSEGPCRPKIHQDLEAGW 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,088,567
Number of Sequences: 219361
Number of extensions: 1602028
Number of successful extensions: 6171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6146
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)