ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7o18 |
|---|---|
| Clone Library Name | barley_pub |
>RL27_ARATH (P51419) 60S ribosomal protein L27| Length = 135 Score = 167 bits (423), Expect(2) = 6e-45 Identities = 85/120 (70%), Positives = 92/120 (76%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAGKKAVI++ F++G RDRPYGHCLVAGL KYP KVIRKDSAKKTAKKSRVK F+KLVN+ Sbjct: 18 YAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNY 77 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRYTLDVDLKEVA+ LEERFKTGKNRWFFTKLRF Sbjct: 78 QHLMPTRYTLDVDLKEVAT--LDALQSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135 Score = 33.5 bits (75), Expect(2) = 6e-45 Identities = 16/22 (72%), Positives = 18/22 (81%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 MVKFLK KAVILLQGR G++ Sbjct: 1 MVKFLKQNKAVILLQGRYAGKK 22
>RL27_PEA (Q05462) 60S ribosomal protein L27| Length = 135 Score = 163 bits (412), Expect(2) = 1e-44 Identities = 80/120 (66%), Positives = 91/120 (75%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAGKKAVIV+ F++GTR++PYGHCLVAG+ K+P KVI+KDSAKKTAKKSRVK F+KLVN+ Sbjct: 18 YAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNY 77 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRYTLDVDLK+ P LEERFKTGKNRWFFTKLRF Sbjct: 78 QHLMPTRYTLDVDLKDAV--VPDVLQSKDKKVTALKETKKSLEERFKTGKNRWFFTKLRF 135 Score = 36.6 bits (83), Expect(2) = 1e-44 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 MVKFLKP KAVILLQGR G++ Sbjct: 1 MVKFLKPNKAVILLQGRYAGKK 22
>RL27_SOLTU (P41101) 60S ribosomal protein L27| Length = 138 Score = 161 bits (408), Expect(2) = 6e-43 Identities = 80/121 (66%), Positives = 89/121 (73%), Gaps = 1/121 (0%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAG+KAVIVR F+EGTRDRPYGHCLVAG+++YPKKVIRKDSAKK KKSRVK F+KLVN+ Sbjct: 18 YAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNY 77 Query: 394 THLMPTRYTLDVDLKEVASG-APXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLR 218 H+MPTRYTLD DLK+V L ERFKTGKNRWFFTKLR Sbjct: 78 NHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTARRTKARLAERFKTGKNRWFFTKLR 137 Query: 217 F 215 F Sbjct: 138 F 138 Score = 32.7 bits (73), Expect(2) = 6e-43 Identities = 15/22 (68%), Positives = 17/22 (77%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 M KFLKP KAVILLQG+ G + Sbjct: 1 MEKFLKPNKAVILLQGKYAGRK 22
>RL27_PYRST (Q02984) 60S ribosomal protein L27| Length = 134 Score = 135 bits (341), Expect(2) = 1e-34 Identities = 71/120 (59%), Positives = 82/120 (68%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 +AGKKAVIVR F++GT RPYGH LV GL K P+KV ++ S KK AKKS +K F+K VN+ Sbjct: 18 FAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNY 77 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRYTLDVD K VA+ A LEE+FKTGKNRWFFTKLRF Sbjct: 78 NHLMPTRYTLDVDFKGVAAEA---QENPTKKVEARKECKKLLEEKFKTGKNRWFFTKLRF 134 Score = 30.8 bits (68), Expect(2) = 1e-34 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 MVKFLK GK V++L GR G++ Sbjct: 1 MVKFLKSGKVVVVLSGRFAGKK 22
>RL27_HIPCM (P61359) 60S ribosomal protein L27| Length = 135 Score = 116 bits (291), Expect(2) = 4e-28 Identities = 56/120 (46%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAG+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKSKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.1 bits (61), Expect(2) = 4e-28 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVMVLAGRYAGRK 21
>RL27_BRARE (Q7ZV82) 60S ribosomal protein L27| Length = 135 Score = 116 bits (290), Expect(2) = 5e-28 Identities = 56/120 (46%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAG+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.1 bits (61), Expect(2) = 5e-28 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVMVLAGRYAGRK 21
>RL27_YEAST (P38706) 60S ribosomal protein L27| Length = 136 Score = 117 bits (292), Expect(2) = 6e-28 Identities = 58/121 (47%), Positives = 78/121 (64%), Gaps = 1/121 (0%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAGKK VIV+ +EG++ P+GH LVAG+ +YP KV +K AKK AK++++K F+K+VN+ Sbjct: 18 YAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNY 77 Query: 394 THLMPTRYTLDVD-LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLR 218 HL+PTRYTLDV+ K V S EER + GKN+WFF+KLR Sbjct: 78 NHLLPTRYTLDVEAFKSVVS--TETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLR 135 Query: 217 F 215 F Sbjct: 136 F 136 Score = 26.9 bits (58), Expect(2) = 6e-28 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 M KFLK GK ++++GR G++ Sbjct: 1 MAKFLKAGKVAVVVRGRYAGKK 22
>RL17_ICTPU (Q90YU1) 60S ribosomal protein L27| Length = 135 Score = 115 bits (287), Expect(2) = 1e-27 Identities = 55/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAG+KAVIV+ ++GT DRPY H LV+G+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTIVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.1 bits (61), Expect(2) = 1e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVMVLAGRYAGRK 21
>RL27_RAT (P61354) 60S ribosomal protein L27| Length = 135 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 55/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.5 bits (62), Expect(2) = 1e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVLVLAGRYSGRK 21
>RL27_MOUSE (P61358) 60S ribosomal protein L27| Length = 135 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 55/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.5 bits (62), Expect(2) = 1e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVLVLAGRYSGRK 21
>RL27_HUMAN (P61353) 60S ribosomal protein L27| Length = 135 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 55/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.5 bits (62), Expect(2) = 1e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVLVLAGRYSGRK 21
>RL27_CHICK (P61355) 60S ribosomal protein L27| Length = 135 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 55/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.5 bits (62), Expect(2) = 1e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVLVLAGRYSGRK 21
>RL27_CERNI (P61357) 60S ribosomal protein L27| Length = 135 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 55/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.5 bits (62), Expect(2) = 1e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVLVLAGRYSGRK 21
>RL27_BOVIN (P61356) 60S ribosomal protein L27| Length = 135 Score = 114 bits (285), Expect(2) = 1e-27 Identities = 55/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EER+KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 135 Score = 28.5 bits (62), Expect(2) = 1e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVLVLAGRYSGRK 21
>RL27_CANFA (Q9XSU7) 60S ribosomal protein L27| Length = 135 Score = 113 bits (282), Expect(2) = 3e-27 Identities = 54/120 (45%), Positives = 75/120 (62%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y+G+KAVIV+ ++GT DRPY H LVAG+ +YP+KV KK AK+S++K F+K+ N+ Sbjct: 17 YSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNY 76 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY++D+ L + EE++KTGKN+WFF KLRF Sbjct: 77 NHLMPTRYSVDIPLDKTVVN-KDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 135 Score = 28.5 bits (62), Expect(2) = 3e-27 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 620 KFLKPGKAVILLQGRVRGEE 561 KF+KPGK V++L GR G + Sbjct: 2 KFMKPGKVVLVLAGRYSGRK 21
>RL27B_SCHPO (O74538) 60S ribosomal protein L27-B| Length = 136 Score = 109 bits (272), Expect(2) = 6e-26 Identities = 52/121 (42%), Positives = 78/121 (64%), Gaps = 1/121 (0%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 +AGKK VI++ ++G++ P+GH +VAG+ +YP KV + AK+ AK+SRVK F+K++N+ Sbjct: 18 FAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINY 77 Query: 394 THLMPTRYTLDVD-LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLR 218 HLMPTRY L++D LK + + P EE+++TGK+ WFFT LR Sbjct: 78 NHLMPTRYALELDNLKGLVT--PTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLR 135 Query: 217 F 215 F Sbjct: 136 F 136 Score = 28.1 bits (61), Expect(2) = 6e-26 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 MVK LKPGK ++ +GR G++ Sbjct: 1 MVKILKPGKVALVTRGRFAGKK 22
>RL27A_SCHPO (O14388) 60S ribosomal protein L27-A| Length = 136 Score = 104 bits (260), Expect(2) = 1e-24 Identities = 50/121 (41%), Positives = 77/121 (63%), Gaps = 1/121 (0%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 +AGKK VI++ ++G++ P+GH +VAG+ +YP KV + AK+ A++SRVK F+K+VN+ Sbjct: 18 FAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNY 77 Query: 394 THLMPTRYTLDVD-LKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLR 218 HLMPTRY L++D LK + + EE++++GK+ WFFT LR Sbjct: 78 NHLMPTRYALELDNLKGLITA--DTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLR 135 Query: 217 F 215 F Sbjct: 136 F 136 Score = 28.5 bits (62), Expect(2) = 1e-24 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 MVK LKPGK ++ +GR G++ Sbjct: 1 MVKILKPGKVALITRGRFAGKK 22
>RL27_CANAL (Q9P843) 60S ribosomal protein L27| Length = 136 Score = 104 bits (260), Expect(2) = 4e-24 Identities = 53/120 (44%), Positives = 72/120 (60%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAGKK VIV+ +EGT+ P+ H +VAG+ + P KV +K AKK K+++VK F+KLVN+ Sbjct: 18 YAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNY 77 Query: 394 THLMPTRYTLDVDLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFFTKLRF 215 HLMPTRY+LDV+ + A EE+ + GKN+WFF KL F Sbjct: 78 NHLMPTRYSLDVESFKSAV-TSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136 Score = 26.6 bits (57), Expect(2) = 4e-24 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -1 Query: 626 MVKFLKPGKAVILLQGRVRGEE 561 M KF+K GK I+++GR G++ Sbjct: 1 MAKFIKSGKVAIVVRGRYAGKK 22
>RL27_CAEEL (P91914) 60S ribosomal protein L27| Length = 136 Score = 108 bits (270), Expect = 1e-23 Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 5/125 (4%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 YAG+KAV+V+ +EG DR Y H ++AG+ +YP KV + KK K++++K FLK+V++ Sbjct: 18 YAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSY 77 Query: 394 THLMPTRYTLDV-----DLKEVASGAPXXXXXXXXXXXXXXXXXXXLEERFKTGKNRWFF 230 THL+PTRY++DV ++ + A AP EER+KTGKN+WFF Sbjct: 78 THLLPTRYSVDVAFDKTNINKEALKAP------SKKRKALVEVKSKFEERYKTGKNKWFF 131 Query: 229 TKLRF 215 TKLRF Sbjct: 132 TKLRF 136
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic protease (EC| 3.4.23.-); Endonuclease; Reverse transcriptase (EC 2.7.7.49)] Length = 692 Score = 30.0 bits (66), Expect = 6.3 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = -2 Query: 490 LAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNFTHLMPTRYTLDVDL 353 + K PK++I D +K +++ VFLK+ N L+P Y D L Sbjct: 54 ILKQPKEIIIADKSKHYIREAISNVFLKIENKEFLIPIIYLHDSGL 99
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 29.6 bits (65), Expect = 8.3 Identities = 23/73 (31%), Positives = 31/73 (42%) Frame = -2 Query: 574 YAGKKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKVFLKLVNF 395 Y G + + +R +GH G KKV KD ++ + KS VK+F N Sbjct: 781 YTGYDMDDAMILNKSAHERGFGH----GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNS 836 Query: 394 THLMPTRYTLDVD 356 T TR LD D Sbjct: 837 TIRESTRDMLDND 849 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,818,487 Number of Sequences: 219361 Number of extensions: 973534 Number of successful extensions: 2565 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2544 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
