ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8d15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTF7_ARATH (Q96324) Glutathione S-transferase (EC 2.5.1.18) (GS... 40 3e-05
2GSTF3_ARATH (P42761) Glutathione S-transferase ERD13 (EC 2.5.1.1... 37 0.010
3GSTF6_ARATH (Q96266) Glutathione S-transferase 6 (EC 2.5.1.18) (... 27 0.088
4HAP1_RAT (P54256) Huntingtin-associated protein 1 (HAP-1) 29 3.5
5GSTF1_TOBAC (P30109) Glutathione S-transferase PARB (EC 2.5.1.18... 28 5.9
6MAO1_COLP3 (Q47WB0) NAD-dependent malic enzyme (EC 1.1.1.38) (NA... 28 5.9
7IF2_PROMM (Q7V5M4) Translation initiation factor IF-2 28 5.9
8BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor 28 5.9
9GSTF2_TOBAC (P46440) Glutathione S-transferase APIC (EC 2.5.1.18... 28 7.7

>GSTF7_ARATH (Q96324) Glutathione S-transferase (EC 2.5.1.18) (GST class-phi)|
          Length = 214

 Score = 39.7 bits (91), Expect(2) = 3e-05
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -3

Query: 294 SQYFAGGEFTLAXLVHMPNTDLLVXKNGKAGLITERKNL 178
           ++Y  G EFTLA L HMP    ++ +   +GL+T R+NL
Sbjct: 154 NRYLGGDEFTLADLSHMPGMRYIMNETSLSGLVTSRENL 192



 Score = 25.4 bits (54), Expect(2) = 3e-05
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 187 KESLPDGGMRXSARPSWKKVVEL 119
           +E+L       SARP+WKK++EL
Sbjct: 189 RENLNRWWNEISARPAWKKLMEL 211



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>GSTF3_ARATH (P42761) Glutathione S-transferase ERD13 (EC 2.5.1.18) (GST|
           class-phi)
          Length = 214

 Score = 37.4 bits (85), Expect = 0.010
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = -3

Query: 297 ESQYFAGGEFTLAXLVHMPNTDLLVXKNGKAGLITERKNL 178
           +++Y AG   +LA L H+P T+ LV   GKA LI +RK++
Sbjct: 151 KNEYLAGDFVSLADLAHLPFTEYLVGPIGKAHLIKDRKHV 190



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>GSTF6_ARATH (Q96266) Glutathione S-transferase 6 (EC 2.5.1.18) (GST class phi)|
          Length = 215

 Score = 27.3 bits (59), Expect(2) = 0.088
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 297 ESQYFAGGEFTLAXLVHMPNTDLLVXKNGK 208
           +S++ AG  FTLA L H+P    L+  + K
Sbjct: 155 KSEFLAGDSFTLADLHHLPAIHYLLGTDSK 184



 Score = 25.8 bits (55), Expect(2) = 0.088
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 160 RXSARPSWKKVVELQ 116
           + SARP+W KV++LQ
Sbjct: 199 KISARPAWAKVIDLQ 213



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>HAP1_RAT (P54256) Huntingtin-associated protein 1 (HAP-1)|
          Length = 629

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 274 GVHP--CRPCAHAQH*SPRXKKRQ-GGSDHREKESLPDGGM 161
           GVHP   R  +H Q    R ++RQ  G  HR++ S+P G +
Sbjct: 371 GVHPESLRAGSHMQDYGSRPRERQEDGKSHRQRSSMPAGSV 411



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>GSTF1_TOBAC (P30109) Glutathione S-transferase PARB (EC 2.5.1.18) (GST|
           class-phi)
          Length = 213

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 297 ESQYFAGGEFTLAXLVHMPNTDLLVXKNGK 208
           ES+Y  G  FTL  L H+PN   L+    K
Sbjct: 153 ESKYLGGDSFTLVDLHHIPNIYYLMSSKVK 182



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>MAO1_COLP3 (Q47WB0) NAD-dependent malic enzyme (EC 1.1.1.38) (NAD-ME)|
          Length = 562

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 294 SQYFAGGEF-TLAXLVHMPNTDLLVXKNGKAGLITER 187
           +++   GEF +L  ++H    D+L+  +G+AGL TE+
Sbjct: 360 AEWDIAGEFASLVEVMHGAKPDILIGVSGQAGLFTEK 396



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>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/62 (29%), Positives = 24/62 (38%)
 Frame = -2

Query: 298 GEPVFRRGGVHPCRPCAHAQH*SPRXKKRQGGSDHREKESLPDGGMRXSARPSWKKVVEL 119
           G  V  RGG     P       +P   KR G   HR  ++   G  R   RP W    +L
Sbjct: 380 GTSVGTRGGSEGATPPVERTATAPTAPKRPG---HRPAQAPAAGAPRRPGRPEWDDSAKL 436

Query: 118 QS 113
           ++
Sbjct: 437 EA 438



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>BAR3_CHITE (Q03376) Balbiani ring protein 3 precursor|
          Length = 1700

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = -1

Query: 251  CTCPTLISS*XKTARRV*SPRERIFTRWWDEVLGSSVMEEGCRVAECTG 105
            C CP          + +  P +   T+WW++ +   V + GC    C G
Sbjct: 1247 CVCP----------KNMEKPADNCKTKWWNDEMCQCVCKPGCPEGGCKG 1285



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>GSTF2_TOBAC (P46440) Glutathione S-transferase APIC (EC 2.5.1.18) (GST|
           class-phi)
          Length = 213

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 297 ESQYFAGGEFTLAXLVHMPNTDLLVXKNGK 208
           ES+Y  G  FTL  L H+PN   L+    K
Sbjct: 153 ESKYLGGDSFTLVDLHHIPNIYYLMSTKVK 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,168,152
Number of Sequences: 219361
Number of extensions: 689366
Number of successful extensions: 1550
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1550
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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