ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7o13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, comple... 291 6e-76
2gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete ... 291 6e-76
3gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete ... 291 6e-76
4gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete ... 291 6e-76
5emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clo... 283 1e-73
6emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clo... 283 1e-73
7gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, comple... 236 3e-59
8emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clo... 228 7e-57
9emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clo... 228 7e-57
10emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clo... 220 2e-54
11emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin 141 1e-30
12dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds 58 1e-05
13gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete seq... 42 0.87
14gb|AC004927.2| Homo sapiens PAC clone RP5-910I17 from 7, complet... 42 0.87
15gb|AC147271.3| Pan troglodytes BAC clone RP43-121F15 from chromo... 42 0.87
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
17dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
18dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds 42 0.87
19gb|AC115728.11| Mus musculus chromosome 5, clone RP23-31J24, com... 40 3.5
20emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chr... 40 3.5
21gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3... 40 3.5
22gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome... 40 3.5
23gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small he... 40 3.5
24gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small he... 40 3.5
25gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P1... 40 3.5
26gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, co... 40 3.5
27gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complet... 40 3.5
28gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338)... 40 3.5
29gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3... 40 3.5 
>gb|L36883.1|BLYBTH7T Hordeum vulgare thionin (BTH7) gene, complete cds
          Length = 2259

 Score =  291 bits (147), Expect = 6e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                        
Query: 120  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2227 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 2168

                                                                        
Query: 180  aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2167 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 2108

                                       
Query: 240  acatgcgttgctgcagagtcccatgtc 266
            |||||||||||||||||||||||||||
Sbjct: 2107 acatgcgttgctgcagagtcccatgtc 2081



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 98   acagaaaatgacaaaacgaccttgg 122
            |||||||||||||||||||||||||
Sbjct: 2209 acagaaaatgacaaaacgaccttgg 2185



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 84   acttcaccatcattacagaaa 104
            |||||||||||||||||||||
Sbjct: 2133 acttcaccatcattacagaaa 2113
to top
>gb|M19048.1|BLYTHNC Barley leaf specific thionin mRNA, complete cds, clone pKG1940
          Length = 663

 Score =  291 bits (147), Expect = 6e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 470

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 410

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 409 acatgcgttgctgcagagtcccatgtc 383



 Score =  121 bits (61), Expect = 1e-24
 Identities = 81/87 (93%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaactttnatattaagcca-gggtatnaatagattcatcgtggcgactcttattggaa 59
           ||||||||| ||||||||||| |||||| ||||||||||||||||   ||||||||||||
Sbjct: 645 tggaacttttatattaagccaagggtataaatagattcatcgtgggttctcttattggaa 586

                                      
Query: 60  cgagggaaaaaacagaaatacataact 86
           |||||||||||||||||||||||||||
Sbjct: 585 cgagggaaaaaacagaaatacataact 559



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 98  acagaaaatgacaaaacgaccttgg 122
           |||||||||||||||||||||||||
Sbjct: 511 acagaaaatgacaaaacgaccttgg 487



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 84  acttcaccatcattacagaaa 104
           |||||||||||||||||||||
Sbjct: 435 acttcaccatcattacagaaa 415
to top
>gb|M19047.1|BLYTHNB Barley leaf specific thionin mRNA, complete cds, clone pKG1348
          Length = 608

 Score =  291 bits (147), Expect = 6e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 470

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 410

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 409 acatgcgttgctgcagagtcccatgtc 383



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 39/39 (100%)
 Strand = Plus / Minus

                                                  
Query: 48  ctcttattggaacgagggaaaaaacagaaatacataact 86
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcttattggaacgagggaaaaaacagaaatacataact 559



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 98  acagaaaatgacaaaacgaccttgg 122
           |||||||||||||||||||||||||
Sbjct: 511 acagaaaatgacaaaacgaccttgg 487



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 84  acttcaccatcattacagaaa 104
           |||||||||||||||||||||
Sbjct: 435 acttcaccatcattacagaaa 415
to top
>gb|M19046.1|BLYTHNA Barley leaf specific thionin mRNA, complete cds, clone pKG2872
          Length = 540

 Score =  291 bits (147), Expect = 6e-76
 Identities = 147/147 (100%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 470

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 410

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 409 acatgcgttgctgcagagtcccatgtc 383



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 98  acagaaaatgacaaaacgaccttgg 122
           |||||||||||||||||||||||||
Sbjct: 511 acagaaaatgacaaaacgaccttgg 487



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 84  acttcaccatcattacagaaa 104
           |||||||||||||||||||||
Sbjct: 435 acttcaccatcattacagaaa 415
to top
>emb|X05590.1|HVTHIOR5 Barley mRNA for leaf-specific thionin (clone DD3)
          Length = 491

 Score =  283 bits (143), Expect = 1e-73
 Identities = 146/147 (99%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 370 tggtatcaagattgttgaacagaaaatgaaaaaacgaccttggccatagaaatcatgccc 311

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 251

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 250 acatgcgttgctgcagagtcccatgtc 224



 Score =  129 bits (65), Expect = 5e-27
 Identities = 82/87 (94%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaactttnatattaagcca-gggtatnaatagattcatcgtggcgactcttattggaa 59
           ||||||||| ||||||||||| ||| || |||||||||||||||| ||||||||||||||
Sbjct: 486 tggaacttttatattaagccaagggcataaatagattcatcgtggtgactcttattggaa 427

                                      
Query: 60  cgagggaaaaaacagaaatacataact 86
           |||||||||||||||||||||||||||
Sbjct: 426 cgagggaaaaaacagaaatacataact 400



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 98  acagaaaatgacaaaacgaccttgg 122
           ||||||||||| |||||||||||||
Sbjct: 352 acagaaaatgaaaaaacgaccttgg 328



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 84  acttcaccatcattacagaaa 104
           |||||||||||||||||||||
Sbjct: 276 acttcaccatcattacagaaa 256
to top
>emb|X05589.1|HVTHIOR4 Barley mRNA for leaf-specific thionin (clone DG3)
          Length = 544

 Score =  283 bits (143), Expect = 1e-73
 Identities = 146/147 (99%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 397

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagaaggcatgattaggcttcaagagactgaatgacttcaccatcattacagaaacgggc 337

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 336 acatgcgttgctgcagagtcccatgtc 310



 Score =  115 bits (58), Expect = 7e-23
 Identities = 58/58 (100%)
 Strand = Plus / Minus

                                                                     
Query: 29  aatagattcatcgtggcgactcttattggaacgagggaaaaaacagaaatacataact 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatagattcatcgtggcgactcttattggaacgagggaaaaaacagaaatacataact 486



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 98  acagaaaatgacaaaacgaccttgg 122
           |||||||||||||||||||||||||
Sbjct: 438 acagaaaatgacaaaacgaccttgg 414



 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 84  acttcaccatcattacagaaa 104
           |||||||||||||||||||||
Sbjct: 362 acttcaccatcattacagaaa 342
to top
>gb|L36882.1|BLYBTH6T Hordeum vulgare thionin (bth6) gene, complete cds
          Length = 2406

 Score =  236 bits (119), Expect = 3e-59
 Identities = 140/147 (95%)
 Strand = Plus / Minus

                                                                        
Query: 120  tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
            ||||||||||||| || || | |||||||||| ||||||||||||||||||||||||| |
Sbjct: 2204 tggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcac 2145

                                                                        
Query: 180  aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2144 aagaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggc 2085

                                       
Query: 240  acatgcgttgctgcagagtcccatgtc 266
            |||||||||||||||||||||||||||
Sbjct: 2084 acatgcgttgctgcagagtcccatgtc 2058



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 65/71 (91%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tggaactttnatattaagcca-gggtatnaatagattcatcgtggcgactcttattggaa 59
            ||||||||| ||||||||||| |||||  |||||||||||||||||||||||| ||||||
Sbjct: 2320 tggaacttttatattaagccaagggtacaaatagattcatcgtggcgactcttgttggaa 2261

                       
Query: 60   cgagggaaaaa 70
            | |||||||||
Sbjct: 2260 caagggaaaaa 2250
to top
>emb|X05576.1|HVTHIOR1 Barley mRNA for leaf-specific thionin (clone DB4)
          Length = 637

 Score =  228 bits (115), Expect = 7e-57
 Identities = 139/147 (94%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||| || || | |||||||||| |||||| |||||||||||||||||| |
Sbjct: 504 tggtatcaagattattcaagacaaaatgacaatacgaccatggccatagaaatcatgcac 445

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 aagaaggcatgattaggcttcaacagactgaatgactgcaccatcattacagaaacgggc 385

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 384 acatgcgttgctgcagagtcccatgtc 358



 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 66/71 (92%), Gaps = 1/71 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaactttnatattaagcca-gggtatnaatagattcatcgtggcgactcttattggaa 59
           ||||||||| ||||||||||| |||||  |||||||||||||||||||||||||||||||
Sbjct: 620 tggaacttttatattaagccaagggtacaaatagattcatcgtggcgactcttattggaa 561

                      
Query: 60  cgagggaaaaa 70
           | |||||||||
Sbjct: 560 caagggaaaaa 550
to top
>emb|X05587.1|HVTHIOR2 Barley mRNA for leaf-specific thionin (clone DC4)
          Length = 658

 Score =  228 bits (115), Expect = 7e-57
 Identities = 139/147 (94%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||| || || | |||||||||| ||||||||||||||||||||||||| |
Sbjct: 511 tggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcac 452

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 451 aagaaggcatgattaggcttcaacagactgaatgactgcaccatcattacaaaaacgggc 392

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 391 acatgcgttgctgcagagtcccatgtc 365



 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 77/85 (90%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaactttnatattaagcca-gggtatnaatagattcatcgtggcgactcttattggaa 59
           ||||||||| ||||||||||| |||||  |||||||||||||||||||| ||||||||||
Sbjct: 627 tggaacttttatattaagccaagggtacaaatagattcatcgtggcgacccttattggaa 568

                                    
Query: 60  cgagggaaaaaacagaaatacataa 84
           | |||| |||||||||||| |||||
Sbjct: 567 caaggg-aaaaacagaaatgcataa 544
to top
>emb|X05588.1|HVTHIOR3 Barley mRNA for leaf-specific thionin (clone DF2)
          Length = 453

 Score =  220 bits (111), Expect = 2e-54
 Identities = 138/147 (93%)
 Strand = Plus / Minus

                                                                       
Query: 120 tggtatcaagattgttgaacagaaaatgacaaaacgaccttggccatagaaatcatgccc 179
           ||||||||||||| || || | |||||||||| ||||||||||||||||||||||||| |
Sbjct: 331 tggtatcaagattattcaagacaaaatgacaatacgaccttggccatagaaatcatgcac 272

                                                                       
Query: 180 aagaaggcatgattaggcttcaacagactgaatgacttcaccatcattacagaaacgggc 239
           ||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 271 aagaaggcatgattaggattcaacagactgaatgactgcaccatcattacaaaaacgggc 212

                                      
Query: 240 acatgcgttgctgcagagtcccatgtc 266
           |||||||||||||||||||||||||||
Sbjct: 211 acatgcgttgctgcagagtcccatgtc 185



 Score = 83.8 bits (42), Expect = 3e-13
 Identities = 77/85 (90%), Gaps = 3/85 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaactttnatattaagcca-gggtatnaatagattcatcgtggcgactcttattggaa 59
           ||||||||| ||||||||||| |||||  |||||||||||||||||||| ||||||||||
Sbjct: 446 tggaacttt-atattaagccaagggtacaaatagattcatcgtggcgacccttattggaa 388

                                    
Query: 60  cgagggaaaaaacagaaatacataa 84
           | |||| |||||||||||| |||||
Sbjct: 387 caaggg-aaaaacagaaatgcataa 364
to top
>emb|AJ508712.1|HVU508712 Hordeum vulgare mRNA for putative thionin
          Length = 414

 Score =  141 bits (71), Expect = 1e-30
 Identities = 74/75 (98%)
 Strand = Plus / Minus

                                                                       
Query: 192 ttaggcttcaacagactgaatgacttcaccatcattacagaaacgggcacatgcgttgct 251
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 414 ttaggcttcaacagactgaatgacatcaccatcattacagaaacgggcacatgcgttgct 355

                          
Query: 252 gcagagtcccatgtc 266
           |||||||||||||||
Sbjct: 354 gcagagtcccatgtc 340
to top
>dbj|AB072341.1| Avena sativa mRNA for thionin Asthi4, complete cds
          Length = 678

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 92/113 (81%)
 Strand = Plus / Minus

                                                                       
Query: 144 aatgacaaaacgaccttggccatagaaatcatgcccaagaaggcatgattaggcttcaac 203
           |||| |||||||||| ||||||||||||| | || | |||  ||||||||||||  | ||
Sbjct: 558 aatggcaaaacgaccatggccatagaaataaggcacgagagtgcatgattaggccccgac 499

                                                                
Query: 204 agactgaatgacttcaccatcattacagaaacgggcacatgcgttgctgcaga 256
           |||  || ||||  |||| |  |||||||||||| ||||||||||| ||||||
Sbjct: 498 agatggattgacggcacccttgttacagaaacggacacatgcgttgttgcaga 446
to top
>gb|AC149153.3| Xenopus tropicalis clone ISB-221D20, complete sequence
          Length = 58609

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 66   aaaaaacagaaatacataact 86
            |||||||||||||||||||||
Sbjct: 8230 aaaaaacagaaatacataact 8210
to top
>gb|AC004927.2| Homo sapiens PAC clone RP5-910I17 from 7, complete sequence
          Length = 80105

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    ccatcattacagaaaatgaca 110
             |||||||||||||||||||||
Sbjct: 54815 ccatcattacagaaaatgaca 54835
to top
>gb|AC147271.3| Pan troglodytes BAC clone RP43-121F15 from chromosome 7, complete
            sequence
          Length = 180569

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 90   ccatcattacagaaaatgaca 110
            |||||||||||||||||||||
Sbjct: 5632 ccatcattacagaaaatgaca 5612
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 126     caagattgttgaacagaaaat 146
               |||||||||||||||||||||
Sbjct: 6740764 caagattgttgaacagaaaat 6740784
to top
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1131G07
          Length = 133992

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   caagattgttgaacagaaaat 146
             |||||||||||||||||||||
Sbjct: 61817 caagattgttgaacagaaaat 61837
to top
>dbj|AB072342.1| Avena sativa mRNA for thionin Asthi5, complete cds
          Length = 641

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 155 gaccttggccatagaaatcatgcccaagaaggcatgattaggctt 199
           ||||| ||||| ||||||||||| |||||  ||||||||| ||||
Sbjct: 496 gacctcggccaaagaaatcatgcacaagagtgcatgattaagctt 452
to top
>gb|AC115728.11| Mus musculus chromosome 5, clone RP23-31J24, complete sequence
          Length = 211351

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     atcattacagaaaatgacaa 111
              ||||||||||||||||||||
Sbjct: 160801 atcattacagaaaatgacaa 160820
to top
>emb|AL646095.27| Mouse DNA sequence from clone RP23-17P18 on chromosome 11 Contains the
             3' end of the Asb3 gene for ankyrin repeat and SOCS
             box-containing protein 3 and two zinc finger protein
             pseudogenes, complete sequence
          Length = 173655

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    cattacagaaaatgacaaaa 113
             ||||||||||||||||||||
Sbjct: 18597 cattacagaaaatgacaaaa 18616
to top
>gb|AC026188.6| Homo sapiens chromosome 3 clone RP11-319I18 map 3p, complete sequence
          Length = 177721

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    aagattgttgaacagaaaat 146
              ||||||||||||||||||||
Sbjct: 113658 aagattgttgaacagaaaat 113677
to top
>gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome 13, complete sequence
          Length = 214859

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    atcattacagaaaatgacaa 111
             ||||||||||||||||||||
Sbjct: 35358 atcattacagaaaatgacaa 35339
to top
>gb|AY128102.1| Lycopersicon esculentum isolate vis1-lta small heat shock protein
            (vis1) gene, complete cds
          Length = 2257

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 47   actcttattggaacgagggaaaaa 70
            |||||||||||||||| |||||||
Sbjct: 1736 actcttattggaacgaaggaaaaa 1713
to top
>gb|AY128101.1| Lycopersicon esculentum isolate vis1-hta small heat shock protein
            (vis1) gene, complete cds
          Length = 2224

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 47   actcttattggaacgagggaaaaa 70
            |||||||||||||||| |||||||
Sbjct: 1703 actcttattggaacgaaggaaaaa 1680
to top
>gb|AC008498.3|AC008498 Homo sapiens chromosome 5 clone CTC-436P18, complete sequence
          Length = 217898

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     aaaaaacagaaatacataac 85
              ||||||||||||||||||||
Sbjct: 161134 aaaaaacagaaatacataac 161153
to top
>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence
          Length = 190133

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     atcattacagaaaatgacaa 111
              ||||||||||||||||||||
Sbjct: 168976 atcattacagaaaatgacaa 168957
to top
>gb|AC150897.2| Mus musculus BAC clone RP23-289F7 from 7, complete sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 66     aaaaaacagaaatacataac 85
              ||||||||||||||||||||
Sbjct: 101064 aaaaaacagaaatacataac 101083
to top
>gb|AY487430.1| Uncultured organism clone 2A15 nitrilase (BD5338) gene, complete
           cds
          Length = 1047

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 157 ccttggccatagaaatcatgccca 180
           |||||||||| |||||||||||||
Sbjct: 862 ccttggccattgaaatcatgccca 839
to top
>gb|AC068314.6| Homo sapiens chromosome 3 clone RP11-194D21 map 3p, complete sequence
          Length = 179814

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  aagattgttgaacagaaaat 146
            ||||||||||||||||||||
Sbjct: 3697 aagattgttgaacagaaaat 3716


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,670,735
Number of Sequences: 3902068
Number of extensions: 2670735
Number of successful extensions: 56735
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56645
Number of HSP's gapped (non-prelim): 83
length of query: 266
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 244
effective length of database: 17,147,199,772
effective search space: 4183916744368
effective search space used: 4183916744368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top