>dbj|D38088.1|WHTPH2AB Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-3
          Length = 1153

 Score = 65.9 bits (33), Expect = 1e-08
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 13  cggctactccttggtggcgggggccttnttcttgggggacttggtggc 60
           |||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct: 533 cggctactccttggtggctgcggtcttcttcttgggggacttggtggc 486

>dbj|D38087.1|WHTPH2AA Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-2
          Length = 717

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 13  cggctactccttggtggcgggggccttnttcttgggggacttgg 56
           |||||||||||||||||| | || ||| ||||||||||||||||
Sbjct: 526 cggctactccttggtggctgcggtcttcttcttgggggacttgg 483

>gb|AF493985.1| Triticum aestivum H2A-1 gene, partial sequence
          Length = 538

 Score = 50.1 bits (25), Expect = 6e-04
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 13  cggctactccttggtggcgggggccttnttcttgggggacttgg 56
           |||||||||||| |||||||  | ||| ||||||||||||||||
Sbjct: 168 cggctactccttcgtggcggccgtcttcttcttgggggacttgg 211

>dbj|D38090.1|WHTPH2AD Triticum aestivum mRNA for protein H2A, complete cds, clone wcH2A-9
          Length = 704

 Score = 44.1 bits (22), Expect = 0.035
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 27  tggcgggggccttnttcttgggggacttggtgg 59
           |||||| | |||| |||||||||||||||||||
Sbjct: 495 tggcggcgaccttcttcttgggggacttggtgg 463

>emb|X94973.1|TAH2A274 T.aestivum histone H2A gene (clone TH274)
          Length = 2546

 Score = 42.1 bits (21), Expect = 0.14
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 36   ccttnttcttgggggacttggtgg 59
            |||| |||||||||||||||||||
Sbjct: 2308 ccttcttcttgggggacttggtgg 2285

>gb|L75802.1|WHTHIH2A Triticum aestivum histone H2A gene, complete cds
          Length = 2546

 Score = 42.1 bits (21), Expect = 0.14
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 36   ccttnttcttgggggacttggtgg 59
            |||| |||||||||||||||||||
Sbjct: 2308 ccttcttcttgggggacttggtgg 2285

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      ttcttgggggacttggtggc 60
               ||||||||||||||||||||
Sbjct: 7508531 ttcttgggggacttggtggc 7508512

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                             
Query: 28     ggcgggggccttnttcttgggggacttggtg 58
              ||||| |||||| |||||| |||||||||||
Sbjct: 410903 ggcggcggccttcttcttgcgggacttggtg 410873

>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1359_D06
          Length = 146805

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                             
Query: 28     ggcgggggccttnttcttgggggacttggtg 58
              ||||| |||||| |||||| |||||||||||
Sbjct: 139687 ggcggcggccttcttcttgcgggacttggtg 139657

>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0017C12
          Length = 135356

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                           
Query: 28   ggcgggggccttnttcttgggggacttggtg 58
            ||||| |||||| |||||| |||||||||||
Sbjct: 7144 ggcggcggccttcttcttgcgggacttggtg 7114

>emb|AL662960.3|OSJN00162 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0021F22,
             complete sequence
          Length = 181498

 Score = 40.1 bits (20), Expect = 0.55
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ttcttgggggacttggtggc 60
             ||||||||||||||||||||
Sbjct: 31004 ttcttgggggacttggtggc 30985

>ref|XM_953815.1| Neurospora crassa OR74A hypothetical protein (NCU09136.1) partial
           mRNA
          Length = 1383

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 7   tgcaggcggctactcctt 24
           ||||||||||||||||||
Sbjct: 453 tgcaggcggctactcctt 470

>ref|XM_331527.1| Neurospora crassa OR74A hypothetical protein (NCU09136.1) partial
           mRNA
          Length = 1383

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 7   tgcaggcggctactcctt 24
           ||||||||||||||||||
Sbjct: 453 tgcaggcggctactcctt 470

>gb|AC115911.14| Mus musculus chromosome 6, clone RP24-481I20, complete sequence
          Length = 168641

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     atgggtgcaggcggctac 19
             ||||||||||||||||||
Sbjct: 88738 atgggtgcaggcggctac 88755

>gb|AC159807.2| Mus musculus BAC clone RP24-399D3 from chromosome 12, complete sequence
          Length = 131785

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 42    tcttgggggacttggtgg 59
             ||||||||||||||||||
Sbjct: 17501 tcttgggggacttggtgg 17484

>emb|AL121777.39|HSJ1057D4 Human DNA sequence from clone RP5-1057D4 on chromosome 20 Contains the
              SRMP1 gene for spermidine synthase pseudogene 1, the 5' end
              of the gene for a novel protein similar to
              glucosamine-6-sulfatases (SULF2) (sulfatase 2, H-SULF2,
              KIAA1247) and a CpG island, complete sequence
          Length = 131888

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 43     cttgggggacttggtggc 60
              ||||||||||||||||||
Sbjct: 108168 cttgggggacttggtggc 108185

>emb|AL713921.15| Mouse DNA sequence from clone RP23-475A8 on chromosome 11 Contains a
              novel gene and a CpG island, complete sequence
          Length = 214065

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 43     cttgggggacttggtggc 60
              ||||||||||||||||||
Sbjct: 101459 cttgggggacttggtggc 101442

>gb|AC002472.8| Homo sapiens Chromosome 22q11.2 PAC Clone p_n5 In BCRL2-GGT Region,
             complete sequence
          Length = 147086

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 43    cttgggggacttggtggc 60
             ||||||||||||||||||
Sbjct: 22681 cttgggggacttggtggc 22664

>gb|AC002470.17| Homo sapiens Chromosome 22q11.2 BAC Clone b135h6 In BCRL2-GGT Region,
              complete sequence
          Length = 235395

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 43     cttgggggacttggtggc 60
              ||||||||||||||||||
Sbjct: 214185 cttgggggacttggtggc 214168

>gb|AC131739.3| Mus musculus BAC clone RP23-97B15 from 13, complete sequence
          Length = 241046

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 41     ttcttgggggacttggtg 58
              ||||||||||||||||||
Sbjct: 105788 ttcttgggggacttggtg 105805

>gb|AC127270.4| Mus musculus BAC clone RP23-453E16 from 12, complete sequence
          Length = 181004

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 42    tcttgggggacttggtgg 59
             ||||||||||||||||||
Sbjct: 21965 tcttgggggacttggtgg 21982


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 256,560
Number of Sequences: 3902068
Number of extensions: 256560
Number of successful extensions: 19826
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19781
Number of HSP's gapped (non-prelim): 45
length of query: 60
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 39
effective length of database: 17,151,101,840
effective search space: 668892971760
effective search space used: 668892971760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)