ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7o08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC ... 100 4e-21
2YAE9_YEAST (P39721) Protein YAL049C 69 2e-11
3YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II 52 2e-06
4RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 32 2.3
5NXF1_DROME (Q9U1H9) Nuclear RNA export factor 1 (Protein tip-ass... 31 3.0
6DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precur... 31 3.0
7MLR_LUMTE (P80164) Myosin regulatory light chain, striated muscl... 30 8.7
8Y2373_BACSK (Q5WFF2) UPF0348 protein ABC2373 30 8.7
9METX_MOOTA (Q2RIW8) Homoserine O-acetyltransferase (EC 2.3.1.31)... 30 8.7

>E134_MAIZE (Q9ZT66) Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-)|
          Length = 303

 Score =  100 bits (249), Expect = 4e-21
 Identities = 47/104 (45%), Positives = 67/104 (64%)
 Frame = -1

Query: 644 DADRPIAVWIKEHTAGKAFEEAKPVIAALKEQGASSVGAAGYCWGAKVVAELAKANEIQT 465
           D  +    W++ H+  KA E+AKP+ AALK++G  SV   GYCWG K+  E+ K ++++ 
Sbjct: 111 DDKKNFTEWLEAHSPVKAAEDAKPLFAALKKEG-KSVAVGGYCWGGKLSVEVGKTSDVKA 169

Query: 464 AVMSHPSFVTVDDIKEVKCPIAVLGAETDVMSPPELVKEFEQVL 333
             +SHP  VT DD+KEVK PI +LGA+ D  +PP+ V  F  VL
Sbjct: 170 VCLSHPYSVTADDMKEVKWPIEILGAQNDTTTPPKEVYRFVHVL 213



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>YAE9_YEAST (P39721) Protein YAL049C|
          Length = 246

 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
 Frame = -1

Query: 641 ADRPIA--VWIKEHTAGKAFEEAKPVIAALK-EQGASSVGAAGYCWGAKVVAELAKANE- 474
           +D+PI    W + H+     +     +  LK E     +G  GYC+GAK   +    +  
Sbjct: 86  SDKPIDRDAWFQRHSPEVTKKIVDGFMKLLKLEYDPKFIGVVGYCFGAKFAVQHISGDGG 145

Query: 473 -IQTAVMSHPSFVTVDDIKEV--KCPIAVLGAETDVMSPPELVKEFEQVLSSNSGIAHFV 303
               A ++HPSFV++++I+ +  K PI +  AE D + P  L    E+ L  N    + +
Sbjct: 146 LANAAAIAHPSFVSIEEIEAIDSKKPILISAAEEDHIFPANLRHLTEEKLKDNHA-TYQL 204

Query: 302 KIFPGVSHGWTVRYNGEDAAAVKSAEEALTDMIDWFN 192
            +F GV+HG+  R +    A   + E+ L D I WFN
Sbjct: 205 DLFSGVAHGFAARGDISIPAVKYAKEKVLLDQIYWFN 241



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>YB4E_SCHPO (O14359) Hypothetical protein C30D10.14 in chromosome II|
          Length = 249

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -1

Query: 581 AKPVIAALKEQGAS-SVGAAGYCWGAKVVAELAKANEIQTAVMSHPSFVTVDDIKEVKCP 405
           AK V A     G + ++G  G+CWGAKV+       +       HPSF    D   V CP
Sbjct: 117 AKVVEAVRANHGPNVTIGTYGFCWGAKVLVTYPATIDFVGIASCHPSFPDSADAANVHCP 176

Query: 404 IAVLGAETDVMSPPELVKEFEQVLSSNSGIA-HFVKIFPGVSHGW 273
           +  L ++ +     +++KE+E+   +N   A    + F  + HGW
Sbjct: 177 VLFLCSKDE---DAKIIKEWEEAFKTNPAYAKSSFETFSDMFHGW 218



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>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element jockey (EC|
           2.7.7.49) (Reverse transcriptase)
          Length = 916

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -1

Query: 449 PSFVTVDDIKEVKCPIAVLGAETDVMSPPELVKEFEQVLSSNSGIAHFVKIFPGVSHGWT 270
           P+   V ++ E    IA    +T V++      + + +L++ SG+  ++  F   +  W 
Sbjct: 661 PTHTPVTEVDEEDVLIATYADDTAVLT------KSKSILAATSGLQEYLDAFQQWAENWN 714

Query: 269 VRYNGEDAAAVKSA 228
           VR N E  A V  A
Sbjct: 715 VRINAEKCANVTFA 728



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>NXF1_DROME (Q9U1H9) Nuclear RNA export factor 1 (Protein tip-associating)|
           (Protein small bristles) (DmNXF1)
          Length = 672

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
 Frame = -1

Query: 506 KVVAELAKANEIQTAVMSHPSFVTVDDIKEVKCPI---AVLGAETDVM--SPPELVKEFE 342
           K+   +AK   IQT  +    F    D+K+V CP+    V+GA  D+M  + P+L     
Sbjct: 202 KMKVTMAKRYNIQTKALDLSRFHADPDLKQVFCPLFRQNVMGAAIDIMCDNIPDL----- 256

Query: 341 QVLSSNSGIAHFVKIFPGV 285
           + L+ N      ++ F GV
Sbjct: 257 EALNLNDNSISSMEAFKGV 275



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>DLHH_METEX (P71505) Putative carboxymethylenebutenolidase precursor (EC|
           3.1.1.45) (Dienelactone hydrolase) (DLH)
          Length = 291

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 32/173 (18%), Positives = 63/173 (36%), Gaps = 14/173 (8%)
 Frame = -1

Query: 665 GDPYVPEDADRPIAVWIKEHTAGKAFEEAKPVIAALKEQGASS---VGAAGYCWGAKVVA 495
           GD     D  + ++  + +    +   +    +A  K  G +    +G  G+CWG ++  
Sbjct: 118 GDVSTLTDIQQIVSEVVSKVPDDQVMSDLDAAVAFAKGTGKADTARLGITGFCWGGRITW 177

Query: 494 ELAKAN-EIQTAVMSHPSFV----------TVDDIKEVKCPIAVLGAETDVMSPPELVKE 348
             A  N  ++  V  +   V           VD   ++K P+  L    D   P   +  
Sbjct: 178 LYAAHNPAVKAGVAWYGRLVGDSSALMPKNPVDVAADLKAPVLGLYGGADQGIPVATIDR 237

Query: 347 FEQVLSSNSGIAHFVKIFPGVSHGWTVRYNGEDAAAVKSAEEALTDMIDWFNK 189
            ++   +      FV ++P   H +   Y     A  + A++    + DWF +
Sbjct: 238 MKEACRAAGKTCDFV-VYPEAGHAFHADYRPSYRA--EPAQDGWKRLQDWFRQ 287



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>MLR_LUMTE (P80164) Myosin regulatory light chain, striated muscle, 25 kDa|
           isoform (LC25)
          Length = 195

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 18/152 (11%)
 Frame = -1

Query: 587 EEAKPVIAALKEQGASSVGAAGYCWGAKVVAELAKANEIQ------TAV-MSHPSFVTVD 429
           EEA    AA  E+ A +  AA       V A L K N+IQ      T +       +  D
Sbjct: 20  EEAPAAAAAPAEEAAPTPSAAPIHKVGNVFA-LFKQNQIQEFKEAFTMIDQDRDGIIGPD 78

Query: 428 DIKEVKCPIAVLGAETDVMSPPELVKEFEQVLSSNSGIAHFVKIFPGVSHGWTVRYNGED 249
           D+  +      +G E D    P++VKE     +      HF+ +F    HG        D
Sbjct: 79  DLGNI---FQQIGREVD----PKVVKEMLAESAEKLNFTHFLTLFGEKLHGTDTEGTLRD 131

Query: 248 AAAV-----------KSAEEALTDMIDWFNKN 186
           A A+           +  ++ LT++ D +NK+
Sbjct: 132 AFALFDEDKLGYLLEEYVKDLLTNVGDQYNKD 163



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>Y2373_BACSK (Q5WFF2) UPF0348 protein ABC2373|
          Length = 405

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -1

Query: 512 GAKVVAELAKANEIQTAVMSHPSFVTVDDIKEVKCPIAVLGAETDVMSPPELVKEF--EQ 339
           GA +V EL  A  +QTA       VT+  +  ++C +   G+E   ++P   + EF  + 
Sbjct: 63  GADLVVELPYAYSVQTAERFAEGAVTI--LAALRCSVLNFGSEKGEIAPFYALAEFMNDH 120

Query: 338 VLSSNSGIAHFVKIFPGVSH 279
            ++ N  +  F+K   GVS+
Sbjct: 121 QVAFNHHVKQFLK--DGVSY 138



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>METX_MOOTA (Q2RIW8) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 374

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -1

Query: 422 KEVKCPIAVLGAETDVMSPPELVKEFEQVLSSNSGIAHFVKIFPGVSH 279
           ++  CP   +G  +D + PP  V+E  ++++   G A + +I     H
Sbjct: 300 RDFPCPCLGIGISSDFLFPPYQVQEIVRMINDGGGHARYAEIDSPYGH 347


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,397,769
Number of Sequences: 219361
Number of extensions: 1835717
Number of successful extensions: 5231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5227
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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