ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483549.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1785 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 536 tgaggatgttgtagttggcggcgacggag 564 ||||| ||||||||||||||||||||||| Sbjct: 388 tgaggttgttgtagttggcggcgacggag 360
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 536 tgaggatgttgtagttggcggcgacggag 564 ||||| ||||||||||||||||||||||| Sbjct: 26902324 tgaggttgttgtagttggcggcgacggag 26902296
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 536 tgaggatgttgtagttggcggcgacggag 564 ||||| ||||||||||||||||||||||| Sbjct: 3724 tgaggttgttgtagttggcggcgacggag 3696
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 536 tgaggatgttgtagttggcggcgacggag 564 ||||| ||||||||||||||||||||||| Sbjct: 165114 tgaggttgttgtagttggcggcgacggag 165086
>dbj|AK112001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B08, full insert sequence Length = 1829 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 536 tgaggatgttgtagttggcggcgacggag 564 ||||| ||||||||||||||||||||||| Sbjct: 134 tgaggttgttgtagttggcggcgacggag 106
>dbj|AK111766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063C15, full insert sequence Length = 2131 Score = 50.1 bits (25), Expect = 0.008 Identities = 28/29 (96%) Strand = Plus / Minus Query: 536 tgaggatgttgtagttggcggcgacggag 564 ||||| ||||||||||||||||||||||| Sbjct: 441 tgaggttgttgtagttggcggcgacggag 413
>gb|AY110281.1| Zea mays CL27576_1 mRNA sequence Length = 673 Score = 48.1 bits (24), Expect = 0.032 Identities = 30/32 (93%) Strand = Plus / Plus Query: 363 ggcgtgcgtggggtggagcatgtcccagaaca 394 ||||||||||||||| |||| ||||||||||| Sbjct: 350 ggcgtgcgtggggtgcagcaggtcccagaaca 381
>gb|AY105081.1| Zea mays PCO097316 mRNA sequence Length = 1518 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Minus Query: 327 gccgtagaagaaggcgacgacgccgcgttggatggtggcgtgcgtggggtggagcatgtc 386 ||||||||||| |||||| || || |||| | || || ||||| || || |||||||| Sbjct: 1221 gccgtagaagatggcgaccaccccacgttcatttgttgcctgcgtaggatgtagcatgtc 1162 Query: 387 ccagaacatgtagtc 401 ||||||||||||||| Sbjct: 1161 ccagaacatgtagtc 1147
>gb|AC103592.2| Homo sapiens chromosome 1 clone RP11-335E14, complete sequence Length = 197372 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 99 ttttgaatgtacaagatgtttt 120 |||||||||||||||||||||| Sbjct: 143321 ttttgaatgtacaagatgtttt 143342
>gb|AC099769.2| Homo sapiens chromosome 1 clone RP5-963M5, complete sequence Length = 99680 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 99 ttttgaatgtacaagatgtttt 120 |||||||||||||||||||||| Sbjct: 94579 ttttgaatgtacaagatgtttt 94558
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Minus Query: 399 gtcatcgtggtcggcggcgggg 420 |||||||||||||||||||||| Sbjct: 615721 gtcatcgtggtcggcggcgggg 615700
>gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO), ArsB (arsB), ArsR1 (arsR1), ArsC (arsC), and ArsT (arsT) genes, complete cds; and unknown genes Length = 7568 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 gtcatcgtggtcggcggcggg 419 ||||||||||||||||||||| Sbjct: 2522 gtcatcgtggtcggcggcggg 2502
>gb|AC119567.11| Homo sapiens X BAC RP11-416J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 79556 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 64 aaaataacacacttattatct 84 ||||||||||||||||||||| Sbjct: 2403 aaaataacacacttattatct 2423
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 466 ttcccggagccgcagcacgcc 486 ||||||||||||||||||||| Sbjct: 2923127 ttcccggagccgcagcacgcc 2923147
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 361 gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 401 ||||||||||| ||||| |||| ||||||||| | |||||| Sbjct: 27177258 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 27177298 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 458 cgttgagcttcccggagccgcagcacgccgtc 489 |||||| ||| |||||||||||||| |||||| Sbjct: 27177346 cgttgaacttgccggagccgcagcaagccgtc 27177377
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 361 gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 401 ||||||||||| ||||| |||| ||||||||| | |||||| Sbjct: 73707 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 73747 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 458 cgttgagcttcccggagccgcagcacgccgtc 489 |||||| ||| |||||||||||||| |||||| Sbjct: 73795 cgttgaacttgccggagccgcagcaagccgtc 73826
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Plus Query: 361 gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 401 ||||||||||| ||||| |||| ||||||||| | |||||| Sbjct: 27929 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 27969 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 458 cgttgagcttcccggagccgcagcacgccgtc 489 |||||| ||| |||||||||||||| |||||| Sbjct: 28017 cgttgaacttgccggagccgcagcaagccgtc 28048
>dbj|AK103585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B12, full insert sequence Length = 1312 Score = 42.1 bits (21), Expect = 2.0 Identities = 36/41 (87%) Strand = Plus / Minus Query: 361 gtggcgtgcgtggggtggagcatgtcccagaacatgtagtc 401 ||||||||||| ||||| |||| ||||||||| | |||||| Sbjct: 1021 gtggcgtgcgtcgggtgcagcaggtcccagaagaggtagtc 981 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 cgttgagcttcccggagccgcagcacgccgtc 489 |||||| ||| |||||||||||||| |||||| Sbjct: 933 cgttgaacttgccggagccgcagcaagccgtc 902
>ref|NM_190284.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gaagaaggcgacgacgccgc 352 |||||||||||||||||||| Sbjct: 364 gaagaaggcgacgacgccgc 383
>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence Length = 1429 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 363 ggcgtgcgtggggtggagcatgtcccagaaca 394 ||||||||| ||||| |||| ||||||||||| Sbjct: 1143 ggcgtgcgtcgggtgcagcaggtcccagaaca 1112
>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence Length = 198403 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 118 tttggcagtttcaaattaaactgtcaaa 145 ||||| ||||||||| |||||||||||| Sbjct: 122863 tttggtagtttcaaaataaactgtcaaa 122890
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 cgagcgtggcgaagttgacg 303 |||||||||||||||||||| Sbjct: 1855915 cgagcgtggcgaagttgacg 1855896
>gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosome 17, complete sequence Length = 174143 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 118 tttggcagtttcaaattaaactgtcaaa 145 ||||| ||||||||| |||||||||||| Sbjct: 118465 tttggtagtttcaaaataaactgtcaaa 118438
>emb|Z83933.1|CVZ83933 Chlorobium vibrioforme 15 kb genomic DNA fragment Length = 14648 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 atcgtggtcggcggcggggc 421 |||||||||||||||||||| Sbjct: 2877 atcgtggtcggcggcggggc 2896
>emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment 1/24 Length = 311050 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 gcgttgagcttcccggagccgcag 480 ||||||||||||||| |||||||| Sbjct: 289413 gcgttgagcttcccgaagccgcag 289390
>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24 Length = 157180 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 acgacgccgcgttggatggtggcg 366 |||||||||||||||||| ||||| Sbjct: 102871 acgacgccgcgttggatgatggcg 102848
>gb|AC078857.12| Homo sapiens 3 BAC RP11-678L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190060 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 tactgcctctgtttttgaat 106 |||||||||||||||||||| Sbjct: 70406 tactgcctctgtttttgaat 70425
>gb|AE005952.1| Caulobacter crescentus CB15 section 278 of 359 of the complete genome Length = 13994 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gtcatcgtggtcggcggcgg 418 |||||||||||||||||||| Sbjct: 2865 gtcatcgtggtcggcggcgg 2884
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 426 cgtcgtgcccgggtggctgcacatcacc 453 |||||||||||| ||||||| ||||||| Sbjct: 3720565 cgtcgtgcccggatggctgcgcatcacc 3720538
>gb|AC159471.6| Mus musculus 6 BAC RP24-148O24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159386 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 tgttttggcagtttcaaatt 134 |||||||||||||||||||| Sbjct: 99184 tgttttggcagtttcaaatt 99203
>emb|AL954812.14| Zebrafish DNA sequence from clone DKEY-50G15, complete sequence Length = 192304 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 ttcaaattaaactgtcaaaacatc 150 |||||| ||||||||||||||||| Sbjct: 130459 ttcaaaataaactgtcaaaacatc 130482
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gtcatcgtggtcggcggcgg 418 |||||||||||||||||||| Sbjct: 3236759 gtcatcgtggtcggcggcgg 3236778
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 aggcgacgacgccgcgttggatgg 361 |||||||||||||||| ||||||| Sbjct: 1080952 aggcgacgacgccgcgctggatgg 1080975
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gaagaaggcgacgacgccgc 352 |||||||||||||||||||| Sbjct: 39040515 gaagaaggcgacgacgccgc 39040534
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 ggcgaagttgacgggctcgccgta 314 ||||||||||||| |||||||||| Sbjct: 8777871 ggcgaagttgacgcgctcgccgta 8777894 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 gtcatcgtggtcggcggcgg 418 |||||||||||||||||||| Sbjct: 2046376 gtcatcgtggtcggcggcgg 2046395
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gaagaaggcgacgacgccgc 352 |||||||||||||||||||| Sbjct: 114148 gaagaaggcgacgacgccgc 114167
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 gaagaaggcgacgacgccgc 352 |||||||||||||||||||| Sbjct: 58495 gaagaaggcgacgacgccgc 58514
>gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complete sequence Length = 129164 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ctgtttttgaatgtacaaga 114 |||||||||||||||||||| Sbjct: 20615 ctgtttttgaatgtacaaga 20596
>gb|AE005053.1| Halobacterium sp. NRC-1 section 84 of 170 of the complete genome Length = 11842 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 gtcatcgtggtcggcggcgg 418 |||||||||||||||||||| Sbjct: 7260 gtcatcgtggtcggcggcgg 7241
>gb|AF110374.1|AF110374 Aegilops speltoides granule-bound starch synthase WX-TsB protein (wx-TsB) gene, complete cds Length = 2826 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 gatgttgtagttggcggcga 559 |||||||||||||||||||| Sbjct: 1663 gatgttgtagttggcggcga 1644
>dbj|AK059531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D08, full insert sequence Length = 1451 Score = 40.1 bits (20), Expect = 7.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 458 cgttgagcttcccggagccgcagcacgccgtc 489 |||||| ||| |||||||||||||| |||||| Sbjct: 951 cgttgaacttgccggagccgcagcaagccgtc 920
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cccgtgacgagcgtggcgaa 296 |||||||||||||||||||| Sbjct: 2248800 cccgtgacgagcgtggcgaa 2248819
>gb|L43364.1|ADRORF1G Mastadenovirus sus1 pVIII protein (ORF 1) gene, complete cds, PAV-1 fiber protein (ORF5) gene, complete cds Length = 1993 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 tgaggatgttgtagttggcg 555 |||||||||||||||||||| Sbjct: 646 tgaggatgttgtagttggcg 627
>dbj|AB070941.1| Streptomyces avermitilis polyketide-1 biosynthetic gene cluster Length = 24045 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 291 ggcgaagttgacgggctcgccgta 314 ||||||||||||| |||||||||| Sbjct: 3863 ggcgaagttgacgcgctcgccgta 3886 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,824,480 Number of Sequences: 3902068 Number of extensions: 3824480 Number of successful extensions: 66579 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65687 Number of HSP's gapped (non-prelim): 892 length of query: 570 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 547 effective length of database: 17,143,297,704 effective search space: 9377383844088 effective search space used: 9377383844088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
