ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AM158977.1| Messor bouvieri mariner-like transposon, clone M... 40 0.79
2ref|XM_824634.1| Trypanosoma brucei TREU927 hypothetical protein... 38 3.1
3emb|BX510935.28| Zebrafish DNA sequence from clone DKEY-207L24 i... 38 3.1
4emb|CR388093.11| Zebrafish DNA sequence from clone CH211-279L9 i... 38 3.1
5emb|BX571843.19| Zebrafish DNA sequence from clone DKEY-250K10 i... 38 3.1
6emb|BX000703.15| Zebrafish DNA sequence from clone CH211-276I6 i... 38 3.1
7gb|AC090284.6| Homo sapiens chromosome 11, clone RP11-348B14, co... 38 3.1
8emb|CR386290.1| Gallus gallus finished cDNA, clone ChEST56n16 38 3.1
9gb|AC017069.12| Homo sapiens BAC clone RP11-380P3 from 2, comple... 38 3.1
10dbj|AP003784.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 3.1

>emb|AM158977.1| Messor bouvieri mariner-like transposon, clone Mboumar-PCR-900-39
          Length = 903

 Score = 40.1 bits (20), Expect = 0.79
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  cttatcttttccttcacctc 60
           ||||||||||||||||||||
Sbjct: 121 cttatcttttccttcacctc 140



 Score = 40.1 bits (20), Expect = 0.79
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  cttatcttttccttcacctc 60
           ||||||||||||||||||||
Sbjct: 88  cttatcttttccttcacctc 107



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>ref|XM_824634.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.01.8430)
            partial mRNA
          Length = 2892

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 48   tttccttcacctcctcgtc 66
            |||||||||||||||||||
Sbjct: 2389 tttccttcacctcctcgtc 2371



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>emb|BX510935.28| Zebrafish DNA sequence from clone DKEY-207L24 in linkage group 14,
             complete sequence
          Length = 128666

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    gcctcttatcttttccttc 55
             |||||||||||||||||||
Sbjct: 82249 gcctcttatcttttccttc 82231



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>emb|CR388093.11| Zebrafish DNA sequence from clone CH211-279L9 in linkage group 2,
              complete sequence
          Length = 153673

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     tttccttcacctcctcgtc 66
              |||||||||||||||||||
Sbjct: 128498 tttccttcacctcctcgtc 128516



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>emb|BX571843.19| Zebrafish DNA sequence from clone DKEY-250K10 in linkage group 14,
             complete sequence
          Length = 137288

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    gcctcttatcttttccttc 55
             |||||||||||||||||||
Sbjct: 53060 gcctcttatcttttccttc 53042



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>emb|BX000703.15| Zebrafish DNA sequence from clone CH211-276I6 in linkage group 14,
             complete sequence
          Length = 156295

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    gcctcttatcttttccttc 55
             |||||||||||||||||||
Sbjct: 82078 gcctcttatcttttccttc 82060



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>gb|AC090284.6| Homo sapiens chromosome 11, clone RP11-348B14, complete sequence
          Length = 160146

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 41     cttatcttttccttcacct 59
              |||||||||||||||||||
Sbjct: 121050 cttatcttttccttcacct 121032



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>emb|CR386290.1| Gallus gallus finished cDNA, clone ChEST56n16
          Length = 1479

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 13  gcagtcttacagtagtctt 31
           |||||||||||||||||||
Sbjct: 883 gcagtcttacagtagtctt 901



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>gb|AC017069.12| Homo sapiens BAC clone RP11-380P3 from 2, complete sequence
          Length = 143252

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    cctcttatcttttccttca 56
             |||||||||||||||||||
Sbjct: 48752 cctcttatcttttccttca 48734



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>dbj|AP003784.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-654C20, complete
              sequence
          Length = 153539

 Score = 38.2 bits (19), Expect = 3.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 41     cttatcttttccttcacct 59
              |||||||||||||||||||
Sbjct: 107123 cttatcttttccttcacct 107141


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 533,868
Number of Sequences: 3902068
Number of extensions: 533868
Number of successful extensions: 40498
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40480
Number of HSP's gapped (non-prelim): 18
length of query: 77
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 56
effective length of database: 17,151,101,840
effective search space: 960461703040
effective search space used: 960461703040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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