ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8d04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475371.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 534 Score = 99.6 bits (50), Expect = 1e-18 Identities = 77/87 (88%) Strand = Plus / Minus Query: 1 gacaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 396 gacaatccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgag 337 Query: 61 agctgtncttttgtcancattatttct 87 ||||| |||||||| | |||||||| Sbjct: 336 tgctgttcttttgtcgacgttatttct 310
>dbj|AK104166.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-D02, full insert sequence Length = 925 Score = 99.6 bits (50), Expect = 1e-18 Identities = 77/87 (88%) Strand = Plus / Minus Query: 1 gacaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 489 gacaatccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgag 430 Query: 61 agctgtncttttgtcancattatttct 87 ||||| |||||||| | |||||||| Sbjct: 429 tgctgttcttttgtcgacgttatttct 403
>dbj|AK099044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013145O08, full insert sequence Length = 969 Score = 99.6 bits (50), Expect = 1e-18 Identities = 77/87 (88%) Strand = Plus / Minus Query: 1 gacaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 509 gacaatccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgag 450 Query: 61 agctgtncttttgtcancattatttct 87 ||||| |||||||| | |||||||| Sbjct: 449 tgctgttcttttgtcgacgttatttct 423
>dbj|AK066739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079J15, full insert sequence Length = 997 Score = 99.6 bits (50), Expect = 1e-18 Identities = 77/87 (88%) Strand = Plus / Minus Query: 1 gacaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 574 gacaatccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgag 515 Query: 61 agctgtncttttgtcancattatttct 87 ||||| |||||||| | |||||||| Sbjct: 514 tgctgttcttttgtcgacgttatttct 488
>dbj|AK059189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H02, full insert sequence Length = 889 Score = 99.6 bits (50), Expect = 1e-18 Identities = 77/87 (88%) Strand = Plus / Minus Query: 1 gacaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 513 gacaatccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgag 454 Query: 61 agctgtncttttgtcancattatttct 87 ||||| |||||||| | |||||||| Sbjct: 453 tgctgttcttttgtcgacgttatttct 427
>dbj|AB042259.1| Oryza sativa (japonica cultivar-group) copz1 mRNA for zeta1-COP, complete cds Length = 807 Score = 99.6 bits (50), Expect = 1e-18 Identities = 77/87 (88%) Strand = Plus / Minus Query: 1 gacaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 466 gacaatccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgag 407 Query: 61 agctgtncttttgtcancattatttct 87 ||||| |||||||| | |||||||| Sbjct: 406 tgctgttcttttgtcgacgttatttct 380
>gb|AC117265.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1281_H05, complete sequence Length = 163130 Score = 87.7 bits (44), Expect = 5e-15 Identities = 71/81 (87%) Strand = Plus / Plus Query: 7 ccctccatcaacaatttcatnaaggcataataggattagatccagattttcaagagctgt 66 |||||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||| Sbjct: 86874 ccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgagtgctgt 86933 Query: 67 ncttttgtcancattatttct 87 |||||||| | |||||||| Sbjct: 86934 tcttttgtcgacgttatttct 86954
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 87.7 bits (44), Expect = 5e-15 Identities = 71/81 (87%) Strand = Plus / Plus Query: 7 ccctccatcaacaatttcatnaaggcataataggattagatccagattttcaagagctgt 66 |||||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||| Sbjct: 22497467 ccctccatcaacaatttcatcgaggcacaataggatgagatccagattttcgagtgctgt 22497526 Query: 67 ncttttgtcancattatttct 87 |||||||| | |||||||| Sbjct: 22497527 tcttttgtcgacgttatttct 22497547
>gb|AY105099.1| Zea mays PCO093572 mRNA sequence Length = 1077 Score = 81.8 bits (41), Expect = 3e-13 Identities = 66/75 (88%) Strand = Plus / Minus Query: 2 acaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaaga 61 ||||||||||||||||||||||||| |||||| |||||||| | ||||| ||| || || Sbjct: 583 acaatccctccatcaacaatttcatcaaggcacaataggatcatatccaaattctcgagt 524 Query: 62 gctgtncttttgtca 76 ||||| ||||||||| Sbjct: 523 gctgtccttttgtca 509
>dbj|AB040668.2| Zea mays copz1 mRNA for nonclathrin coat protein zeta1-COP, complete cds Length = 905 Score = 81.8 bits (41), Expect = 3e-13 Identities = 66/75 (88%) Strand = Plus / Minus Query: 2 acaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaaga 61 ||||||||||||||||||||||||| |||||| |||||||| | ||||| ||| || || Sbjct: 442 acaatccctccatcaacaatttcatcaaggcacaataggatcatatccaaattctcgagt 383 Query: 62 gctgtncttttgtca 76 ||||| ||||||||| Sbjct: 382 gctgtccttttgtca 368
>gb|AC139355.8| Medicago truncatula clone mth2-36o3, complete sequence Length = 108135 Score = 58.0 bits (29), Expect = 4e-06 Identities = 65/78 (83%) Strand = Plus / Minus Query: 7 ccctccatcaacaatttcatnaaggcataataggattagatccagattttcaagagctgt 66 ||||||||||||||| |||| ||||||||| || || ||||||| ||| ||||| || Sbjct: 16342 ccctccatcaacaatctcatcaaggcataacagaatgagatccaaattctcaagtgcctc 16283 Query: 67 ncttttgtcancattatt 84 ||||||||| ||||||| Sbjct: 16282 tcttttgtcaacattatt 16265
>gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1p4, complete sequence Length = 124443 Score = 58.0 bits (29), Expect = 4e-06 Identities = 65/78 (83%) Strand = Plus / Plus Query: 7 ccctccatcaacaatttcatnaaggcataataggattagatccagattttcaagagctgt 66 ||||||||||||||| |||| ||||||||| || || ||||||| ||| ||||| || Sbjct: 19363 ccctccatcaacaatctcatcaaggcataacagaatgagatccaaattctcaagtgcctc 19422 Query: 67 ncttttgtcancattatt 84 ||||||||| ||||||| Sbjct: 19423 tcttttgtcaacattatt 19440
>ref|NM_190514.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1440 Score = 56.0 bits (28), Expect = 2e-05 Identities = 51/59 (86%) Strand = Plus / Minus Query: 2 acaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 ||||||||||||||||||| ||| | ||||||||| | ||| ||||||| |||||||| Sbjct: 1334 acaatccctccatcaacaacttcgtcaaggcataagaagataagatccaagttttcaag 1276
>emb|AJ866986.1| Medicago truncatula mRNA for coatomer zeta1 subunit (copz1 gene) Length = 543 Score = 56.0 bits (28), Expect = 2e-05 Identities = 42/47 (89%) Strand = Plus / Minus Query: 4 aatccctccatcaacaatttcatnaaggcataataggattagatcca 50 |||||||||||||||||| |||| ||||||||| || || ||||||| Sbjct: 402 aatccctccatcaacaatctcatcaaggcataaaagaatgagatcca 356
>dbj|AK073775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033065F01, full insert sequence Length = 917 Score = 56.0 bits (28), Expect = 2e-05 Identities = 51/59 (86%) Strand = Plus / Minus Query: 2 acaatccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 ||||||||||||||||||| ||| | ||||||||| | ||| ||||||| |||||||| Sbjct: 518 acaatccctccatcaacaacttcgtcaaggcataagaagataagatccaagttttcaag 460
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.016 Identities = 46/54 (85%) Strand = Plus / Minus Query: 7 ccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||| ||| | ||||||||| | ||| ||||||| |||||||| Sbjct: 35976423 ccctccatcaacaacttcgtcaaggcataagaagataagatccaagttttcaag 35976370
>dbj|AP003231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D11 Length = 138108 Score = 46.1 bits (23), Expect = 0.016 Identities = 46/54 (85%) Strand = Plus / Minus Query: 7 ccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||| ||| | ||||||||| | ||| ||||||| |||||||| Sbjct: 75101 ccctccatcaacaacttcgtcaaggcataagaagataagatccaagttttcaag 75048
>dbj|AK066366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067M01, full insert sequence Length = 1420 Score = 46.1 bits (23), Expect = 0.016 Identities = 46/54 (85%) Strand = Plus / Minus Query: 7 ccctccatcaacaatttcatnaaggcataataggattagatccagattttcaag 60 |||||||||||||| ||| | ||||||||| | ||| ||||||| |||||||| Sbjct: 515 ccctccatcaacaacttcgtcaaggcataagaagataagatccaagttttcaag 462
>dbj|AB040543.1| Glycine max copz2 mRNA for nonclathrin coat protein zeta2-COP, complete cds Length = 833 Score = 42.1 bits (21), Expect = 0.24 Identities = 35/40 (87%) Strand = Plus / Minus Query: 11 ccatcaacaatttcatnaaggcataataggattagatcca 50 |||||||||||||||| || ||| ||||| || ||||||| Sbjct: 397 ccatcaacaatttcatcaatgcacaatagaatgagatcca 358
>gb|DQ481667.1| Takifugu rubripes HoxCa gene cluster, complete sequence Length = 378763 Score = 40.1 bits (20), Expect = 0.96 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ccctccatcaacaatttcat 26 |||||||||||||||||||| Sbjct: 239441 ccctccatcaacaatttcat 239422
>emb|CR645601.2|CNS0EX47 Tetraodon nigroviridis full-length cDNA Length = 821 Score = 40.1 bits (20), Expect = 0.96 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ccctccatcaacaatttcat 26 |||||||||||||||||||| Sbjct: 227 ccctccatcaacaatttcat 208 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 578,593 Number of Sequences: 3902068 Number of extensions: 578593 Number of successful extensions: 34844 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34797 Number of HSP's gapped (non-prelim): 47 length of query: 89 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 68 effective length of database: 17,151,101,840 effective search space: 1166274925120 effective search space used: 1166274925120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
