ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8d02 |
|---|---|
| Clone Library Name | barley_pub |
>UGPI4_ARATH (Q84MC0) Putative GPI-anchored protein At3g06035 precursor| Length = 200 Score = 41.2 bits (95), Expect(2) = 9e-07 Identities = 17/28 (60%), Positives = 21/28 (75%) Frame = -3 Query: 495 VGIGXEGDWVVVVLSTSTDSGDYSPAPP 412 +GIG E DW+VVVL+T+T G YS A P Sbjct: 142 IGIGKEDDWIVVVLTTNTPEGSYSTATP 169 Score = 30.8 bits (68), Expect(2) = 9e-07 Identities = 12/19 (63%), Positives = 17/19 (89%) Frame = -2 Query: 556 LTNYTKSQYNRFLNDTKYS 500 LTN+TKSQY+ LND+K++ Sbjct: 122 LTNFTKSQYSMSLNDSKFT 140
>UGPI3_ARATH (P59833) Uncharacterized GPI-anchored protein At5g19250 precursor| Length = 196 Score = 40.4 bits (93), Expect(2) = 4e-06 Identities = 16/26 (61%), Positives = 21/26 (80%) Frame = -3 Query: 495 VGIGXEGDWVVVVLSTSTDSGDYSPA 418 +GIG + +W+VVVL+TST G YSPA Sbjct: 143 IGIGSDDNWIVVVLTTSTPEGSYSPA 168 Score = 29.3 bits (64), Expect(2) = 4e-06 Identities = 11/19 (57%), Positives = 17/19 (89%) Frame = -2 Query: 556 LTNYTKSQYNRFLNDTKYS 500 LTN+T SQY++ LND+K++ Sbjct: 123 LTNFTMSQYSKDLNDSKFT 141
>UGPI1_ARATH (Q8GUL8) Uncharacterized GPI-anchored protein At5g19230 precursor| Length = 189 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -3 Query: 495 VGIGXEGDWVVVVLSTSTDSGDYS 424 +GIG WVVV+L+T+T G YS Sbjct: 134 IGIGSGDIWVVVILTTNTPEGGYS 157
>UGPI2_ARATH (Q84VZ5) Putative GPI-anchored protein At5g19240 precursor| Length = 199 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -3 Query: 495 VGIGXEGDWVVVVLSTSTDSGDYS 424 VGI +G W+V VL+T+T G YS Sbjct: 144 VGIDSDGIWLVTVLTTNTPGGSYS 167
>SYFA_TROWT (Q83GS9) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 336 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = -2 Query: 409 LELGSFCPAIQLDDSFAGRVCSFADEVRRSMLLISRATPLQMSVLILCPCRSFLYHSDFR 230 L +G F PA + D+ FA+ SMLL + +P+Q+ L+ P + S Sbjct: 146 LNIGPFHPAREESDTI------FAEPRSASMLLRTHTSPVQLRALVSNPLPLYCVSSGKV 199 Query: 229 FYFCPVDTT 203 F P+D T Sbjct: 200 FRSDPLDAT 208
>SYFA_TROW8 (Q83HH3) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 336 Score = 30.0 bits (66), Expect = 4.6 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = -2 Query: 409 LELGSFCPAIQLDDSFAGRVCSFADEVRRSMLLISRATPLQMSVLILCPCRSFLYHSDFR 230 L +G F PA + D+ FA+ SMLL + +P+Q+ L+ P + S Sbjct: 146 LNIGPFHPAREESDTI------FAEPRSASMLLRTHTSPVQLRALVSNPLPLYCVSSGKV 199 Query: 229 FYFCPVDTT 203 F P+D T Sbjct: 200 FRSDPLDAT 208
>JPH4_MOUSE (Q80WT0) Junctophilin-4 (Junctophilin-like 1 protein)| Length = 628 Score = 30.0 bits (66), Expect = 4.6 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -3 Query: 426 SPAPPGSNWAPSVQPFSW 373 SP PPG NW P P +W Sbjct: 478 SPLPPGGNWGPFSSPKAW 495
>POLN_SPDV (Q8JJX1) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.1 Length = 2601 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -2 Query: 364 FAGRVCSFADEVRRSMLLISRATPLQMSVLILCPCRSFLYHSDFRFYFCP 215 FA +CS+ADEVRR M + +C CR++ FY P Sbjct: 405 FARALCSWADEVRRDMEDEQDLYGITSVTTWICICRAYDKRQQHTFYRRP 454
>CP6L1_BLAGE (Q9GQM9) Cytochrome P450 6l1 (EC 1.14.-.-) (CYPVIL1)| Length = 503 Score = 29.6 bits (65), Expect = 6.0 Identities = 23/77 (29%), Positives = 35/77 (45%) Frame = -2 Query: 367 SFAGRVCSFADEVRRSMLLISRATPLQMSVLILCPCRSFLYHSDFRFYFCPVDTTVQ*HM 188 SF RVC + + ++I + TP+ +S+L L H D FY P D + Sbjct: 365 SFIDRVCLHDYHIPGTDVVIEKGTPIFVSLLGL--------HRDSIFYPDPEDFNPERFN 416 Query: 187 HAKRFGIKTTYFHYLPF 137 K+ G+ F Y+PF Sbjct: 417 KEKKSGVHP--FSYIPF 431
>Y1240_HELPY (O25838) Maf-like protein HP1240| Length = 190 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%) Frame = +3 Query: 129 IVVKGK**K*VVLIPNLLACICYCTVVSTGQK*KRKSE------*YRNDRHGHKIKTLIC 290 + KGK K L+ N A + +VVS G + +RK++ + ++GH+I+ L C Sbjct: 46 LACKGKLEKAKELLANNCAIVVADSVVSVGNRMQRKAKNKQEALEFLKRQNGHEIEVLTC 105 Query: 291 SG-VARDMSNIDLLTSSAKLQTLPAKE 368 S ++ + +DL A+L+ E Sbjct: 106 SALISPVLEWLDLSVFRARLKAFDPSE 132
>CHS2_SCHPO (O74756) Chitin synthase-like protein 2| Length = 926 Score = 29.3 bits (64), Expect = 7.8 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%) Frame = -3 Query: 429 YSPAPPGSNWA-PSVQPFSWMILSLVGFVVLLMK*GDRCCSYRVLHRCK*VF*SYARVDH 253 YS P NWA P F ++++ L+ F ++ G+R S RVL +F S A Sbjct: 628 YSSLNPYGNWARPLFLVFEYILICLI-FSQFMLAMGNRPRSCRVL-----LFISTALFSI 681 Query: 252 FCIIQIFVSTFVQLTPQYSSICMPRGLGSKQLIFTICLSPQLAMVLC 112 I +F ++ L P ++S LG+ FT + L ++ C Sbjct: 682 IMIYFVFCVFYISLIPLHNSDNSEIVLGNN--YFTTLIFSSLLILAC 726
>PMPC_CHLMU (Q9PJY1) Probable outer membrane protein pmpC precursor (Polymorphic| membrane protein C) Length = 1460 Score = 29.3 bits (64), Expect = 7.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = -3 Query: 459 VLSTSTDSGDYSPAPPGSNWAPSVQP 382 ++ TST+SG+ S PP SN P+ P Sbjct: 992 IVDTSTNSGNSSSTPPSSNTPPNSTP 1017 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,249,451 Number of Sequences: 219361 Number of extensions: 1283554 Number of successful extensions: 3341 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3272 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3341 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4528412720 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
