ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY106689.1| Zea mays PCO137705 mRNA sequence 135 2e-28
2gb|BT018245.1| Zea mays clone EL01N0563D07.c mRNA sequence 119 1e-23
3ref|NM_188866.1| Oryza sativa (japonica cultivar-group), mRNA 100 9e-18
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
5dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
6emb|CR376801.8| Zebrafish DNA sequence from clone CH211-13K18 in... 46 0.12
7ref|NM_185321.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.48
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
9dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
10dbj|AK106504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
11gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome... 42 1.9
12gb|AC146606.2| Mus musculus BAC clone RP23-277P7 from chromosome... 42 1.9
13gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, c... 42 1.9
14gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, com... 42 1.9
15dbj|AK134343.1| Mus musculus 13 days embryo male testis cDNA, RI... 42 1.9
16gb|AC067805.9| Homo sapiens chromosome 15, clone RP11-63A23, com... 42 1.9
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
18dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 42 1.9
19dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
21dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
22emb|AL603743.8| Zebrafish DNA sequence from clone RP71-98D8 Cont... 42 1.9
23gb|AF217491.1|AF217491S1 Homo sapiens fragile 16D oxido reductas... 40 7.6
24gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosom... 40 7.6
25emb|AL691486.10| Human DNA sequence from clone RP11-341D24 on ch... 40 7.6
26emb|AL356457.25| Human DNA sequence from clone RP11-145D11 on ch... 40 7.6
27emb|AL355518.20| Human DNA sequence from clone RP11-39C2 on chro... 40 7.6
28gb|AC144532.4| Homo sapiens 12 BAC RP11-613J12 (Roswell Park Can... 40 7.6
29emb|BX957329.9| Zebrafish DNA sequence from clone CH211-130P21 i... 40 7.6
30emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in ... 40 7.6
31gb|AC108120.3| Homo sapiens chromosome 5 clone RP11-524L6, compl... 40 7.6
32gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 7.6
33dbj|AK126511.1| Homo sapiens cDNA FLJ44547 fis, clone UTERU3006228 40 7.6
34ref|XM_625482.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.6
35gb|AC109134.2| Homo sapiens chromosome 16 clone CTD-2343L8, comp... 40 7.6
36gb|AE004604.1| Pseudomonas aeruginosa PAO1, section 165 of 529 o... 40 7.6
37gb|AC120113.2| Homo sapiens chromosome 5 clone CTD-2324F19, comp... 40 7.6
38dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 7.6
39gb|AC000368.1|HSAC000368 Human Cosmid g1980a012 from 7q31.3, com... 40 7.6
40emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 i... 40 7.6
41gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.6
42gb|L38641.1|ALXRGNP Alexandrium minutum 24S ribosomal RNA (24S r... 40 7.6
43gb|AC005689.1|AC005689 Homo sapiens clone UWGC:g5129z153 from 7q... 40 7.6
44gb|AC005584.1|AC005584 Homo sapiens clone UWGC:g5129z012 from 7q... 40 7.6
45gb|AF086087.1|HUMYZ84G08 Homo sapiens full length insert cDNA cl... 40 7.6
46gb|L37354.1|SERORF1 Saccharopolyspora erythraea ORF1 and ORF4, p... 40 7.6
47dbj|AP000348.1| Homo sapiens genomic DNA, chromosome 22q11.2, cl... 40 7.6 
>gb|AY106689.1| Zea mays PCO137705 mRNA sequence
          Length = 698

 Score =  135 bits (68), Expect = 2e-28
 Identities = 134/155 (86%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                       
Query: 398 gcccagttcgagcccgggggagcaggggagtagtcgccggagtcggtgctggtgctgagg 457
           |||||||| |||||||| ||||| || ||||||||||||||  | |||||||||||||| 
Sbjct: 463 gcccagttggagcccggcggagccggcgagtagtcgccggatcccgtgctggtgctgagc 404

                                                                       
Query: 458 acgacgaccacccagtctccttcgntgccgatcccgacgcccggagtacttggtgtcgtt 517
           ||||| || |||||||| || ||| |  |||||||| |||| |||| ||| | |||||||
Sbjct: 403 acgaccacgacccagtcgccctcgctcgcgatcccggcgcc-ggagaactggctgtcgtt 345

                                              
Query: 518 gaggaaccggttgtactgggacttggtgtagttgg 552
           |||||||||||||||||| ||||||||||||||||
Sbjct: 344 gaggaaccggttgtactgcgacttggtgtagttgg 310



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 327 ctcacttcatcagcaaaactacaaaccctacca 359
           ||||||||| |||||||||||||||||| ||||
Sbjct: 543 ctcacttcaccagcaaaactacaaaccccacca 511
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>gb|BT018245.1| Zea mays clone EL01N0563D07.c mRNA sequence
          Length = 1101

 Score =  119 bits (60), Expect = 1e-23
 Identities = 132/155 (85%), Gaps = 1/155 (0%)
 Strand = Plus / Plus

                                                                       
Query: 398 gcccagttcgagcccgggggagcaggggagtagtcgccggagtcggtgctggtgctgagg 457
           |||||||| ||||||   ||||| || ||||||||||||||  | |||||||||||||| 
Sbjct: 29  gcccagttggagccccttggagccggcgagtagtcgccggatcccgtgctggtgctgagc 88

                                                                       
Query: 458 acgacgaccacccagtctccttcgntgccgatcccgacgcccggagtacttggtgtcgtt 517
           ||||| || |||||||| || ||| |  |||||||| |||| |||| ||| | |||||||
Sbjct: 89  acgaccacgacccagtcgccctcgctcgcgatcccggcgcc-ggagaactggctgtcgtt 147

                                              
Query: 518 gaggaaccggttgtactgggacttggtgtagttgg 552
           |||||||||||||||||| ||||||||||||||||
Sbjct: 148 gaggaaccggttgtactgcgacttggtgtagttgg 182
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>ref|NM_188866.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 585

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 137/165 (83%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                       
Query: 392 gaaggagcccagttcgagcccgggggagcaggggagtagtcgccggagtcggtgctggtg 451
           |||||||||||||| ||||| ||||||||||||||||| || || ||  | | ||| |||
Sbjct: 521 gaaggagcccagttggagccagggggagcaggggagtaatcacctgaacccgagctcgtg 462

                                                                       
Query: 452 ctgaggacgacgaccacccagtctccttcgntgccgatcccgacgcccggagtacttggt 511
           |||||||| ||||||||||| ||||| ||  |  ||||||| ||  || ||| |||||||
Sbjct: 461 ctgaggacaacgaccacccaatctccctcattcgcgatcccaac-accagagaacttggt 403

                                                        
Query: 512 gtcgttgaggaaccggttgtactgggacttggtgtagttggtcag 556
           ||| || ||  || |||||||||| ||||||||||||||||||||
Sbjct: 402 gtcattcagatactggttgtactgtgacttggtgtagttggtcag 358
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 137/165 (83%), Gaps = 1/165 (0%)
 Strand = Plus / Plus

                                                                            
Query: 392      gaaggagcccagttcgagcccgggggagcaggggagtagtcgccggagtcggtgctggtg 451
                |||||||||||||| ||||| ||||||||||||||||| || || ||  | | ||| |||
Sbjct: 26828888 gaaggagcccagttggagccagggggagcaggggagtaatcacctgaacccgagctcgtg 26828947

                                                                            
Query: 452      ctgaggacgacgaccacccagtctccttcgntgccgatcccgacgcccggagtacttggt 511
                |||||||| ||||||||||| ||||| ||  |  ||||||| ||  || ||| |||||||
Sbjct: 26828948 ctgaggacaacgaccacccaatctccctcattcgcgatcccaac-accagagaacttggt 26829006

                                                             
Query: 512      gtcgttgaggaaccggttgtactgggacttggtgtagttggtcag 556
                ||| || ||  || |||||||||| ||||||||||||||||||||
Sbjct: 26829007 gtcattcagatactggttgtactgtgacttggtgtagttggtcag 26829051
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>dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1458_B07
          Length = 99415

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 137/165 (83%), Gaps = 1/165 (0%)
 Strand = Plus / Plus

                                                                         
Query: 392   gaaggagcccagttcgagcccgggggagcaggggagtagtcgccggagtcggtgctggtg 451
             |||||||||||||| ||||| ||||||||||||||||| || || ||  | | ||| |||
Sbjct: 75062 gaaggagcccagttggagccagggggagcaggggagtaatcacctgaacccgagctcgtg 75121

                                                                         
Query: 452   ctgaggacgacgaccacccagtctccttcgntgccgatcccgacgcccggagtacttggt 511
             |||||||| ||||||||||| ||||| ||  |  ||||||| ||  || ||| |||||||
Sbjct: 75122 ctgaggacaacgaccacccaatctccctcattcgcgatcccaac-accagagaacttggt 75180

                                                          
Query: 512   gtcgttgaggaaccggttgtactgggacttggtgtagttggtcag 556
             ||| || ||  || |||||||||| ||||||||||||||||||||
Sbjct: 75181 gtcattcagatactggttgtactgtgacttggtgtagttggtcag 75225
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>emb|CR376801.8| Zebrafish DNA sequence from clone CH211-13K18 in linkage group 10,
             complete sequence
          Length = 199715

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 133   tggtgaaaggcaaatagtgaaaa 155
             |||||||||||||||||||||||
Sbjct: 83828 tggtgaaaggcaaatagtgaaaa 83850
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>ref|NM_185321.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1508

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 430 gtcgccggagtcggtgctggtg 451
           ||||||||||||||||||||||
Sbjct: 596 gtcgccggagtcggtgctggtg 617
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 430    gtcgccggagtcggtgctggtg 451
              ||||||||||||||||||||||
Sbjct: 346921 gtcgccggagtcggtgctggtg 346900



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 31      cccaacaagttgaagttcttg 51
               |||||||||||||||||||||
Sbjct: 5935816 cccaacaagttgaagttcttg 5935836
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>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644B06
          Length = 194509

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 430   gtcgccggagtcggtgctggtg 451
             ||||||||||||||||||||||
Sbjct: 56874 gtcgccggagtcggtgctggtg 56853
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>dbj|AK106504.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F11, full
           insert sequence
          Length = 1508

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 430 gtcgccggagtcggtgctggtg 451
           ||||||||||||||||||||||
Sbjct: 596 gtcgccggagtcggtgctggtg 617
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>gb|AC166104.4| Mus musculus BAC clone RP23-320G7 from chromosome 15, complete sequence
          Length = 209081

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 148    agtgaaaataagttgttttga 168
              |||||||||||||||||||||
Sbjct: 197058 agtgaaaataagttgttttga 197078
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>gb|AC146606.2| Mus musculus BAC clone RP23-277P7 from chromosome 15, complete sequence
          Length = 171208

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 148    agtgaaaataagttgttttga 168
              |||||||||||||||||||||
Sbjct: 151700 agtgaaaataagttgttttga 151680
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>gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, complete sequence
          Length = 197370

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 385    ctggacagaaggagcccagtt 405
              |||||||||||||||||||||
Sbjct: 157671 ctggacagaaggagcccagtt 157651
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>gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, complete sequence
          Length = 135968

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   tcatccagctgaatggctgga 389
             |||||||||||||||||||||
Sbjct: 44270 tcatccagctgaatggctgga 44250
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>dbj|AK134343.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030433K21
            product:unclassifiable, full insert sequence
          Length = 2970

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 38   agttgaagttcttgttttagc 58
            |||||||||||||||||||||
Sbjct: 2190 agttgaagttcttgttttagc 2210
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>gb|AC067805.9| Homo sapiens chromosome 15, clone RP11-63A23, complete sequence
          Length = 170883

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 385   ctggacagaaggagcccagtt 405
             |||||||||||||||||||||
Sbjct: 41076 ctggacagaaggagcccagtt 41056
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 49       ttgttttagctaatcaaagat 69
                |||||||||||||||||||||
Sbjct: 10754081 ttgttttagctaatcaaagat 10754101
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     tgaagttcttgttttagctaa 61
              |||||||||||||||||||||
Sbjct: 544907 tgaagttcttgttttagctaa 544927
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>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0024N18
          Length = 128739

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 31    cccaacaagttgaagttcttg 51
             |||||||||||||||||||||
Sbjct: 57468 cccaacaagttgaagttcttg 57488
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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0537F07
          Length = 147724

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     cccaacaagttgaagttcttg 51
              |||||||||||||||||||||
Sbjct: 136591 cccaacaagttgaagttcttg 136611
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>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1115_D03
          Length = 169378

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 49    ttgttttagctaatcaaagat 69
             |||||||||||||||||||||
Sbjct: 93562 ttgttttagctaatcaaagat 93582
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>emb|AL603743.8| Zebrafish DNA sequence from clone RP71-98D8 Contains the putative novel
             retrotransposon GYPSYDR2, the putative transposon TC1DR1
             similar to C. elegans transposons and four CpG islands,
             complete sequence
          Length = 100214

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 133   tggtgaaaggcaaatagtgaa 153
             |||||||||||||||||||||
Sbjct: 90573 tggtgaaaggcaaatagtgaa 90593
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>gb|AF217491.1|AF217491S1 Homo sapiens fragile 16D oxido reductase (FOR) gene, exon 6
          Length = 26040

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   tgaatggctggacagaagga 397
             ||||||||||||||||||||
Sbjct: 14055 tgaatggctggacagaagga 14074
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>gb|AC137585.3| Mus musculus BAC clone RP23-355I23 from chromosome 18, complete sequence
          Length = 216041

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    gtactgtggtgtcaactgga 218
              ||||||||||||||||||||
Sbjct: 134743 gtactgtggtgtcaactgga 134762
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>emb|AL691486.10| Human DNA sequence from clone RP11-341D24 on chromosome 1, complete
             sequence
          Length = 176194

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   caattgtggtgaaaggcaaa 146
             ||||||||||||||||||||
Sbjct: 35798 caattgtggtgaaaggcaaa 35817
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>emb|AL356457.25| Human DNA sequence from clone RP11-145D11 on chromosome 1 Contains part
             of the DPYD gene for dihydropyrimidine dehydrogenase, a
             ribosomal protein L26 (RPL26) pseudogene and a pseudogene
             similar to part of SEC63-like (S. cerevisiae) (SEC63),
             complete sequence
          Length = 120510

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   catcagcaaaactacaaacc 353
             ||||||||||||||||||||
Sbjct: 19825 catcagcaaaactacaaacc 19844
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>emb|AL355518.20| Human DNA sequence from clone RP11-39C2 on chromosome 6 Contains the gene
              for a novel protein, complete sequence
          Length = 129947

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     ctaatcaaagatgaaagacg 77
              ||||||||||||||||||||
Sbjct: 121040 ctaatcaaagatgaaagacg 121021
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>gb|AC144532.4| Homo sapiens 12 BAC RP11-613J12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 131101

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    tgaaaggcaaatagtgaaaa 155
              ||||||||||||||||||||
Sbjct: 112932 tgaaaggcaaatagtgaaaa 112913
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>emb|BX957329.9| Zebrafish DNA sequence from clone CH211-130P21 in linkage group 23,
             complete sequence
          Length = 76351

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   gcatgcatatgctactgtac 202
             ||||||||||||||||||||
Sbjct: 34167 gcatgcatatgctactgtac 34186
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>emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in linkage group 15,
              complete sequence
          Length = 201465

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     tcttgttttagctaatcaaa 66
              ||||||||||||||||||||
Sbjct: 144487 tcttgttttagctaatcaaa 144468
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>gb|AC108120.3| Homo sapiens chromosome 5 clone RP11-524L6, complete sequence
          Length = 212755

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 233    aaaatctgaatgatacagaaatga 256
              ||||||| ||||||||||||||||
Sbjct: 163933 aaaatctaaatgatacagaaatga 163910
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 433     gccggagtcggtgctggtgc 452
               ||||||||||||||||||||
Sbjct: 1450898 gccggagtcggtgctggtgc 1450879
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>dbj|AK126511.1| Homo sapiens cDNA FLJ44547 fis, clone UTERU3006228
          Length = 3910

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 195  tactgtactgtggtgtcaac 214
            ||||||||||||||||||||
Sbjct: 3364 tactgtactgtggtgtcaac 3383
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>ref|XM_625482.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_180),
            partial mRNA
          Length = 7455

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 151  gaaaataagttgttttgatc 170
            ||||||||||||||||||||
Sbjct: 3122 gaaaataagttgttttgatc 3103
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>gb|AC109134.2| Homo sapiens chromosome 16 clone CTD-2343L8, complete sequence
          Length = 147101

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   tgaatggctggacagaagga 397
             ||||||||||||||||||||
Sbjct: 68182 tgaatggctggacagaagga 68201
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>gb|AE004604.1| Pseudomonas aeruginosa PAO1, section 165 of 529 of the complete
            genome
          Length = 10798

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 433  gccggagtcggtgctggtgc 452
            ||||||||||||||||||||
Sbjct: 7323 gccggagtcggtgctggtgc 7304
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>gb|AC120113.2| Homo sapiens chromosome 5 clone CTD-2324F19, complete sequence
          Length = 129346

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   aaaatctgaatgatacagaaatga 256
             ||||||| ||||||||||||||||
Sbjct: 24127 aaaatctaaatgatacagaaatga 24104
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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 433    gccggagtcggtgctggtgc 452
              ||||||||||||||||||||
Sbjct: 713317 gccggagtcggtgctggtgc 713336
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>gb|AC000368.1|HSAC000368 Human Cosmid g1980a012 from 7q31.3, complete sequence
          Length = 40047

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    ttgttttagctaatcaaaga 68
             ||||||||||||||||||||
Sbjct: 10955 ttgttttagctaatcaaaga 10936
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>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19,
              complete sequence
          Length = 191582

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    acaaaagtagaaacgaaaat 237
              ||||||||||||||||||||
Sbjct: 172160 acaaaagtagaaacgaaaat 172141
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 433     gccggagtcggtgctggtgc 452
               ||||||||||||||||||||
Sbjct: 2656471 gccggagtcggtgctggtgc 2656452
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>gb|L38641.1|ALXRGNP Alexandrium minutum 24S ribosomal RNA (24S rRNA) pseudogene
          Length = 503

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 100 taaccacaatatgcataaaaccat 123
           |||| |||||||||||||||||||
Sbjct: 388 taacaacaatatgcataaaaccat 365
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>gb|AC005689.1|AC005689 Homo sapiens clone UWGC:g5129z153 from 7q31.3, complete sequence
          Length = 44312

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   ttgttttagctaatcaaaga 68
            ||||||||||||||||||||
Sbjct: 7964 ttgttttagctaatcaaaga 7945
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>gb|AC005584.1|AC005584 Homo sapiens clone UWGC:g5129z012 from 7q31, complete sequence
          Length = 43407

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 49    ttgttttagctaatcaaaga 68
             ||||||||||||||||||||
Sbjct: 41842 ttgttttagctaatcaaaga 41823
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>gb|AF086087.1|HUMYZ84G08 Homo sapiens full length insert cDNA clone YZ84G08
          Length = 621

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 tactgtactgtggtgtcaac 214
           ||||||||||||||||||||
Sbjct: 61  tactgtactgtggtgtcaac 80
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>gb|L37354.1|SERORF1 Saccharopolyspora erythraea ORF1 and ORF4, partial cds, thymidine
           diphosphoglucose 4,6-dehydratase (gdh) and thymidine
           diphospho-4-keto-6-deoxyglucose 3,5-epimerase (kde)
           genes, complete cds
          Length = 3500

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 447 tggtgctgaggacgacgacc 466
           ||||||||||||||||||||
Sbjct: 456 tggtgctgaggacgacgacc 475
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>dbj|AP000348.1| Homo sapiens genomic DNA, chromosome 22q11.2, clone N27C7
          Length = 39617

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  tactgtactgtggtgtcaac 214
            ||||||||||||||||||||
Sbjct: 7182 tactgtactgtggtgtcaac 7163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,819,117
Number of Sequences: 3902068
Number of extensions: 4819117
Number of successful extensions: 93946
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93659
Number of HSP's gapped (non-prelim): 282
length of query: 557
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 534
effective length of database: 17,143,297,704
effective search space: 9154520973936
effective search space used: 9154520973936
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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