| Clone Name | rbags7o02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103610.1| Zea mays PCO085932 mRNA sequence Length = 994 Score = 321 bits (162), Expect = 2e-84 Identities = 309/357 (86%), Gaps = 7/357 (1%) Strand = Plus / Minus Query: 349 cggggctgcttcaacccaggaacgttagtccgcttcggtgcaaccttgatttgccgacca 408 ||||| ||||||| ||||||||||||||||| ||||||||| ||||||| || |||||| Sbjct: 612 cggggttgcttcatcccaggaacgttagtcctcttcggtgccaccttgagctggcgacca 553 Query: 409 tgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaacaaattca 468 || | ||||| ||| | | ||| | ||||||||||| |||||| ||||||||||||| Sbjct: 552 tgcaattctgattcattcaacttaatagcttcctgaacagcttcaacttcaacaaattcc 493 Query: 469 acataagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttcggttgac 528 ||||||||||||||||| || ||||||||||||||||||||||| |||||| | ||| || Sbjct: 492 acataagcaaaaccttttggttgcccaaacttgtcagtcaggattgtcact-ctgttaac 434 Query: 529 ggttccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagtcaacatt 588 ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 agttccacaagaattgaaatgctgctgcacttcttctggagtgcatgcatagtcaacatt 374 Query: 589 tccaacaaaaacagaacgagaatccatctcttcttttgcttcagatgtggtcgcattagg 648 |||||| || || || |||||||||||||| ||||| |||||||||||| ||||| || Sbjct: 373 tccaacgaataccgaccgagaatccatctcctctttgttttcagatgtggttgcattggg 314 Query: 649 atctccgccttgcatctccttggcgaccttggcctgcatctcgcggagggcggcggc 705 || ||||||| |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 313 at------cttgcatatccttggcgaccttagcctgcatctcgcggagcgcggcggc 263
>dbj|AK099019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118A14, full insert sequence Length = 938 Score = 293 bits (148), Expect = 4e-76 Identities = 311/364 (85%), Gaps = 1/364 (0%) Strand = Plus / Minus Query: 333 gaatcctcggccccctcggggctgcttcaacccaggaacgttagtccgcttcggtgcaac 392 |||||||| ||| || ||||||||||||| |||||| |||||||||| ||| || || || Sbjct: 616 gaatcctctgcctccgcggggctgcttcatcccagggacgttagtcctctttggcgccac 557 Query: 393 cttgatttgccgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttc 452 ||||||||| |||||||| || ||||| || | | ||| ||||||||||||| |||||| Sbjct: 556 cttgatttggcgaccatgcagttctgattcgttcaacttaacagcttcctgaacagcttc 497 Query: 453 tgcttcaacaaattcaacataagcaaaacctttaggctgcccaaacttgtcagtcaggat 512 | |||||| |||||||||||||| |||||||| || |||||||||||||| |||||||| Sbjct: 496 tacttcaaggaattcaacataagcgaaaccttttggttgcccaaacttgtctgtcaggat 437 Query: 513 agtcacttcggttgacggttccgcaagaattaaaatgctgctgcacttcttctggagtgc 572 ||||| | |||||| ||||| || ||||||||||||||||| ||||| ||||| |||| Sbjct: 436 tgtcac-cctgttgaccgttccacaggaattaaaatgctgctggacttcctctggggtgc 378 Query: 573 atgcatagtcaacatttccaacaaaaacagaacgagaatccatctcttcttttgcttcag 632 ||||||||||||| ||||||||| | || || |||| ||||| || ||||||| ||||| Sbjct: 377 atgcatagtcaacgtttccaacatataccgaccgagcgtccatttcctcttttgattcag 318 Query: 633 atgtggtcgcattaggatctccgccttgcatctccttggcgaccttggcctgcatctcgc 692 ||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 317 atgaggacgcattaggatccagaccttgcatctccttggcgaccttggtctgcatctcgc 258 Query: 693 ggag 696 |||| Sbjct: 257 ggag 254
>dbj|AK060429.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A07, full insert sequence Length = 944 Score = 293 bits (148), Expect = 4e-76 Identities = 311/364 (85%), Gaps = 1/364 (0%) Strand = Plus / Minus Query: 333 gaatcctcggccccctcggggctgcttcaacccaggaacgttagtccgcttcggtgcaac 392 |||||||| ||| || ||||||||||||| |||||| |||||||||| ||| || || || Sbjct: 620 gaatcctctgcctccgcggggctgcttcatcccagggacgttagtcctctttggcgccac 561 Query: 393 cttgatttgccgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttc 452 ||||||||| |||||||| || ||||| || | | ||| ||||||||||||| |||||| Sbjct: 560 cttgatttggcgaccatgcagttctgattcgttcaacttaacagcttcctgaacagcttc 501 Query: 453 tgcttcaacaaattcaacataagcaaaacctttaggctgcccaaacttgtcagtcaggat 512 | |||||| |||||||||||||| |||||||| || |||||||||||||| |||||||| Sbjct: 500 tacttcaaggaattcaacataagcgaaaccttttggttgcccaaacttgtctgtcaggat 441 Query: 513 agtcacttcggttgacggttccgcaagaattaaaatgctgctgcacttcttctggagtgc 572 ||||| | |||||| ||||| || ||||||||||||||||| ||||| ||||| |||| Sbjct: 440 tgtcac-cctgttgaccgttccacaggaattaaaatgctgctggacttcctctggggtgc 382 Query: 573 atgcatagtcaacatttccaacaaaaacagaacgagaatccatctcttcttttgcttcag 632 ||||||||||||| ||||||||| | || || |||| ||||| || ||||||| ||||| Sbjct: 381 atgcatagtcaacgtttccaacatataccgaccgagcgtccatttcctcttttgattcag 322 Query: 633 atgtggtcgcattaggatctccgccttgcatctccttggcgaccttggcctgcatctcgc 692 ||| || |||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 321 atgaggacgcattaggatccagaccttgcatctccttggcgaccttggtctgcatctcgc 262 Query: 693 ggag 696 |||| Sbjct: 261 ggag 258
>ref|XM_467888.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1075 Score = 202 bits (102), Expect = 1e-48 Identities = 292/354 (82%), Gaps = 1/354 (0%) Strand = Plus / Minus Query: 353 gctgcttcaacccaggaacgttagtccgcttcggtgcaaccttgatttgccgaccatgaa 412 ||||||||| |||||| || ||||||| ||| ||||| ||||| || || |||||||| | Sbjct: 587 gctgcttcatcccagggacattagtcctctttggtgccacctttatctgacgaccatgca 528 Query: 413 gctctgactcactaagcttgacagcttcctgaatagcttctgcttcaacaaattcaacat 472 | || || ||| | | || | ||| ||||||| |||||| ||| | |||||| |||| Sbjct: 527 gttcagattcattcaaattcagagcctcctgaactgcttcttgttccagaaattccacat 468 Query: 473 aagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttcggttgacggtt 532 ||||||||||||| ||||| |||||||||||||| | ||| |||||| | ||||| || Sbjct: 467 aagcaaaaccttttggctgtccaaacttgtcagttaagatcgtcact-ctattgactgtg 409 Query: 533 ccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttcca 592 || || | | |||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 408 ccacacgcttgaaaatgctgctgcacttcttctggggtacatgcataatcaacatttcca 349 Query: 593 acaaaaacagaacgagaatccatctcttcttttgcttcagatgtggtcgcattaggatct 652 ||| | ||||| |||| ||||| || || ||||| |||| ||| | ||| |||||||| Sbjct: 348 acatacacagatcgagcatccacctgctcctttgcctcagctgtagacgcgctaggatct 289 Query: 653 ccgccttgcatctccttggcgaccttggcctgcatctcgcggagggcggcggcc 706 || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 288 cctccttgcatctccttggcgaccttggcctgcatgtcgcggagggccgcggcc 235
>dbj|AK061269.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-D06, full insert sequence Length = 1075 Score = 202 bits (102), Expect = 1e-48 Identities = 292/354 (82%), Gaps = 1/354 (0%) Strand = Plus / Minus Query: 353 gctgcttcaacccaggaacgttagtccgcttcggtgcaaccttgatttgccgaccatgaa 412 ||||||||| |||||| || ||||||| ||| ||||| ||||| || || |||||||| | Sbjct: 587 gctgcttcatcccagggacattagtcctctttggtgccacctttatctgacgaccatgca 528 Query: 413 gctctgactcactaagcttgacagcttcctgaatagcttctgcttcaacaaattcaacat 472 | || || ||| | | || | ||| ||||||| |||||| ||| | |||||| |||| Sbjct: 527 gttcagattcattcaaattcagagcctcctgaactgcttcttgttccagaaattccacat 468 Query: 473 aagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttcggttgacggtt 532 ||||||||||||| ||||| |||||||||||||| | ||| |||||| | ||||| || Sbjct: 467 aagcaaaaccttttggctgtccaaacttgtcagttaagatcgtcact-ctattgactgtg 409 Query: 533 ccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttcca 592 || || | | |||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 408 ccacacgcttgaaaatgctgctgcacttcttctggggtacatgcataatcaacatttcca 349 Query: 593 acaaaaacagaacgagaatccatctcttcttttgcttcagatgtggtcgcattaggatct 652 ||| | ||||| |||| ||||| || || ||||| |||| ||| | ||| |||||||| Sbjct: 348 acatacacagatcgagcatccacctgctcctttgcctcagctgtagacgcgctaggatct 289 Query: 653 ccgccttgcatctccttggcgaccttggcctgcatctcgcggagggcggcggcc 706 || |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 288 cctccttgcatctccttggcgaccttggcctgcatgtcgcggagggccgcggcc 235
>gb|AY109465.1| Zea mays CL6587_1 mRNA sequence Length = 1192 Score = 202 bits (102), Expect = 1e-48 Identities = 289/350 (82%), Gaps = 1/350 (0%) Strand = Plus / Minus Query: 353 gctgcttcaacccaggaacgttagtccgcttcggtgcaaccttgatttgccgaccatgaa 412 ||||||||| |||||| || ||||||| |||||| |||||||| || || |||||||| | Sbjct: 569 gctgcttcatcccagggacattagtcctcttcggcgcaaccttaatctgtcgaccatgca 510 Query: 413 gctctgactcactaagcttgacagcttcctgaatagcttctgcttcaacaaattcaacat 472 || || ||| | | || | ||||||||| | ||||||| ||| | ||||||||||| Sbjct: 509 attccgattcattcaagttcagagcttcctggacagcttcttgttccagaaattcaacat 450 Query: 473 aagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttcggttgacggtt 532 ||||||||||||| |||||||||||||||||||||| ||| ||||| | |||||| ||| Sbjct: 449 aagcaaaaccttttggctgcccaaacttgtcagtcaagattgtcac-cctgttgacagtt 391 Query: 533 ccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttcca 592 || |||| | |||||||| |||||||||||||| ||||| ||||| |||||||||||| Sbjct: 390 ccacaagcttggaaatgctgttgcacttcttctggggtgcaagcataatcaacatttcca 331 Query: 593 acaaaaacagaacgagaatccatctcttcttttgcttcagatgtggtcgcattaggatct 652 ||| | |||||||| | ||||| || || || || |||| ||| | | | |||| || Sbjct: 330 acatacacagaacgggcatccacctgctccttcgcctcagctgtagatgtactagggtca 271 Query: 653 ccgccttgcatctccttggcgaccttggcctgcatctcgcggagggcggc 702 || |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 270 cctccttgcatctccttggcgaccttggcctgcatatcgcggagggcggc 221
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 165 bits (83), Expect = 2e-37 Identities = 168/195 (86%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 391 accttgatttgccgaccatgaagctctgactcactaagcttgacagcttcctgaatagct 450 ||||||||||| |||||||| || ||||| || | | ||| ||||||||||||| |||| Sbjct: 6170066 accttgatttggcgaccatgcagttctgattcgttcaacttaacagcttcctgaacagct 6170007 Query: 451 tctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaacttgtcagtcagg 510 ||| |||||| |||||||||||||| |||||||| || |||||||||||||| |||||| Sbjct: 6170006 tctacttcaaggaattcaacataagcgaaaccttttggttgcccaaacttgtctgtcagg 6169947 Query: 511 atagtcacttcggttgacggttccgcaagaattaaaatgctgctgcacttcttctggagt 570 || ||||| | |||||| ||||| || ||||||||||||||||| ||||| ||||| || Sbjct: 6169946 attgtcac-cctgttgaccgttccacaggaattaaaatgctgctggacttcctctggggt 6169888 Query: 571 gcatgcatagtcaac 585 ||||||||||||||| Sbjct: 6169887 gcatgcatagtcaac 6169873 Score = 73.8 bits (37), Expect = 7e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 656 ccttgcatctccttggcgaccttggcctgcatctcgcggag 696 ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 6167174 ccttgcatctccttggcgaccttggtctgcatctcgcggag 6167134 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 333 gaatcctcggccccctcggggctgcttcaacccaggaacgttagtcc 379 |||||||| ||| || ||||||||||||| |||||| |||||||||| Sbjct: 6170227 gaatcctctgcctccgcggggctgcttcatcccagggacgttagtcc 6170181 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 611 tccatctcttcttttgcttcagatgtggtcgcattaggatc 651 ||||| || ||||||| |||||||| || |||||||||||| Sbjct: 6168614 tccatttcctcttttgattcagatgaggacgcattaggatc 6168574
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 165 bits (83), Expect = 2e-37 Identities = 168/195 (86%), Gaps = 1/195 (0%) Strand = Plus / Minus Query: 391 accttgatttgccgaccatgaagctctgactcactaagcttgacagcttcctgaatagct 450 ||||||||||| |||||||| || ||||| || | | ||| ||||||||||||| |||| Sbjct: 83885 accttgatttggcgaccatgcagttctgattcgttcaacttaacagcttcctgaacagct 83826 Query: 451 tctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaacttgtcagtcagg 510 ||| |||||| |||||||||||||| |||||||| || |||||||||||||| |||||| Sbjct: 83825 tctacttcaaggaattcaacataagcgaaaccttttggttgcccaaacttgtctgtcagg 83766 Query: 511 atagtcacttcggttgacggttccgcaagaattaaaatgctgctgcacttcttctggagt 570 || ||||| | |||||| ||||| || ||||||||||||||||| ||||| ||||| || Sbjct: 83765 attgtcac-cctgttgaccgttccacaggaattaaaatgctgctggacttcctctggggt 83707 Query: 571 gcatgcatagtcaac 585 ||||||||||||||| Sbjct: 83706 gcatgcatagtcaac 83692 Score = 73.8 bits (37), Expect = 7e-10 Identities = 40/41 (97%) Strand = Plus / Minus Query: 656 ccttgcatctccttggcgaccttggcctgcatctcgcggag 696 ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 80993 ccttgcatctccttggcgaccttggtctgcatctcgcggag 80953 Score = 54.0 bits (27), Expect = 6e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 333 gaatcctcggccccctcggggctgcttcaacccaggaacgttagtcc 379 |||||||| ||| || ||||||||||||| |||||| |||||||||| Sbjct: 84046 gaatcctctgcctccgcggggctgcttcatcccagggacgttagtcc 84000 Score = 42.1 bits (21), Expect = 2.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 611 tccatctcttcttttgcttcagatgtggtcgcattaggatc 651 ||||| || ||||||| |||||||| || |||||||||||| Sbjct: 82433 tccatttcctcttttgattcagatgaggacgcattaggatc 82393
>ref|XM_467889.1| Oryza sativa (japonica cultivar-group), mRNA Length = 963 Score = 123 bits (62), Expect = 8e-25 Identities = 213/262 (81%), Gaps = 1/262 (0%) Strand = Plus / Minus Query: 353 gctgcttcaacccaggaacgttagtccgcttcggtgcaaccttgatttgccgaccatgaa 412 ||||||||| |||||| || ||||||| ||| ||||| ||||| || || |||||||| | Sbjct: 565 gctgcttcatcccagggacattagtcctctttggtgccacctttatctgacgaccatgca 506 Query: 413 gctctgactcactaagcttgacagcttcctgaatagcttctgcttcaacaaattcaacat 472 | || || ||| | | || | ||| ||||||| |||||| ||| | |||||| |||| Sbjct: 505 gttcagattcattcaaattcagagcctcctgaactgcttcttgttccagaaattccacat 446 Query: 473 aagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttcggttgacggtt 532 ||||||||||||| ||||| |||||||||||||| | ||| |||||| | ||||| || Sbjct: 445 aagcaaaaccttttggctgtccaaacttgtcagttaagatcgtcact-ctattgactgtg 387 Query: 533 ccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttcca 592 || || | | |||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 386 ccacacgcttgaaaatgctgctgcacttcttctggggtacatgcataatcaacatttcca 327 Query: 593 acaaaaacagaacgagaatcca 614 ||| | ||||| |||| ||||| Sbjct: 326 acatacacagatcgagcatcca 305 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 656 ccttgcatctccttggcgaccttggcctgcatctcgcggagggcggcggcc 706 |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 251 ccttgcatctccttggcgaccttggcctgcatgtcgcggagggccgcggcc 201
>dbj|AK071146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081D16, full insert sequence Length = 963 Score = 123 bits (62), Expect = 8e-25 Identities = 213/262 (81%), Gaps = 1/262 (0%) Strand = Plus / Minus Query: 353 gctgcttcaacccaggaacgttagtccgcttcggtgcaaccttgatttgccgaccatgaa 412 ||||||||| |||||| || ||||||| ||| ||||| ||||| || || |||||||| | Sbjct: 565 gctgcttcatcccagggacattagtcctctttggtgccacctttatctgacgaccatgca 506 Query: 413 gctctgactcactaagcttgacagcttcctgaatagcttctgcttcaacaaattcaacat 472 | || || ||| | | || | ||| ||||||| |||||| ||| | |||||| |||| Sbjct: 505 gttcagattcattcaaattcagagcctcctgaactgcttcttgttccagaaattccacat 446 Query: 473 aagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttcggttgacggtt 532 ||||||||||||| ||||| |||||||||||||| | ||| |||||| | ||||| || Sbjct: 445 aagcaaaaccttttggctgtccaaacttgtcagttaagatcgtcact-ctattgactgtg 387 Query: 533 ccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttcca 592 || || | | |||||||||||||||||||||||| || |||||||| |||||||||||| Sbjct: 386 ccacacgcttgaaaatgctgctgcacttcttctggggtacatgcataatcaacatttcca 327 Query: 593 acaaaaacagaacgagaatcca 614 ||| | ||||| |||| ||||| Sbjct: 326 acatacacagatcgagcatcca 305 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Minus Query: 656 ccttgcatctccttggcgaccttggcctgcatctcgcggagggcggcggcc 706 |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 251 ccttgcatctccttggcgaccttggcctgcatgtcgcggagggccgcggcc 201
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 5e-14 Identities = 105/124 (84%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 462 aaattcaacataagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttc 521 |||||| ||||||||||||||||| ||||| |||||||||||||| | ||| ||||| || Sbjct: 31935397 aaattccacataagcaaaaccttttggctgtccaaacttgtcagttaagatcgtcac-tc 31935455 Query: 522 ggttgacggttccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagt 581 ||||| || || || | | |||||||||||||||||||||||| || |||||||| | Sbjct: 31935456 tattgactgtgccacacgcttgaaaatgctgctgcacttcttctggggtacatgcataat 31935515 Query: 582 caac 585 |||| Sbjct: 31935516 caac 31935519 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 656 ccttgcatctccttggcgaccttggcctgcatctcgcggagggcggcggcc 706 |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 31938719 ccttgcatctccttggcgaccttggcctgcatgtcgcggagggccgcggcc 31938769
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 87.7 bits (44), Expect = 5e-14 Identities = 105/124 (84%), Gaps = 1/124 (0%) Strand = Plus / Plus Query: 462 aaattcaacataagcaaaacctttaggctgcccaaacttgtcagtcaggatagtcacttc 521 |||||| ||||||||||||||||| ||||| |||||||||||||| | ||| ||||| || Sbjct: 96398 aaattccacataagcaaaaccttttggctgtccaaacttgtcagttaagatcgtcac-tc 96456 Query: 522 ggttgacggttccgcaagaattaaaatgctgctgcacttcttctggagtgcatgcatagt 581 ||||| || || || | | |||||||||||||||||||||||| || |||||||| | Sbjct: 96457 tattgactgtgccacacgcttgaaaatgctgctgcacttcttctggggtacatgcataat 96516 Query: 582 caac 585 |||| Sbjct: 96517 caac 96520 Score = 85.7 bits (43), Expect = 2e-13 Identities = 49/51 (96%) Strand = Plus / Plus Query: 656 ccttgcatctccttggcgaccttggcctgcatctcgcggagggcggcggcc 706 |||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 99720 ccttgcatctccttggcgaccttggcctgcatgtcgcggagggccgcggcc 99770
>ref|NM_124491.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G51120 mRNA, complete cds Length = 1053 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 441 ctgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaactt 500 ||||| ||||||| |||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct: 551 ctgaacagcttctacttccacaaattcgacatacgcaaaacctttaggttgaccaaactt 492 Query: 501 gtcagtcag 509 || ||||| Sbjct: 491 atctgtcag 483 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 544 aaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaaca 595 |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 449 aaaatgctgctggacttcctctggagtacatgcatagtccacattgccaaca 398
>gb|BT014077.1| Lycopersicon esculentum clone 133177F, mRNA sequence Length = 1196 Score = 65.9 bits (33), Expect = 2e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 455 cttcaacaaattcaacataagcaaaacctttaggctgcccaaacttgtcagtcaggatag 514 ||||||| ||||| ||||| ||| ||||||| ||||| ||||||||||| |||||||||| Sbjct: 592 cttcaacgaattcgacataggcataacctttgggctggccaaacttgtctgtcaggatag 533 Query: 515 t 515 | Sbjct: 532 t 532
>gb|AY116673.1| Arabidopsis thaliana unknown protein (At5g51120) mRNA, complete cds Length = 941 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 441 ctgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaactt 500 ||||| ||||||| |||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct: 514 ctgaacagcttctacttccacaaattcgacatacgcaaaacctttaggttgaccaaactt 455 Query: 501 gtcagtcag 509 || ||||| Sbjct: 454 atctgtcag 446 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 544 aaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaaca 595 |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 412 aaaatgctgctggacttcctctggagtacatgcatagtccacattgccaaca 361
>gb|AY079392.1| Arabidopsis thaliana unknown protein (At5g51120) mRNA, complete cds Length = 715 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 441 ctgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaactt 500 ||||| ||||||| |||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct: 471 ctgaacagcttctacttccacaaattcgacatacgcaaaacctttaggttgaccaaactt 412 Query: 501 gtcagtcag 509 || ||||| Sbjct: 411 atctgtcag 403 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 544 aaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaaca 595 |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 369 aaaatgctgctggacttcctctggagtacatgcatagtccacattgccaaca 318
>gb|AY057580.1| Arabidopsis thaliana unknown protein (At5g51120) mRNA, complete cds Length = 992 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 441 ctgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaactt 500 ||||| ||||||| |||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct: 517 ctgaacagcttctacttccacaaattcgacatacgcaaaacctttaggttgaccaaactt 458 Query: 501 gtcagtcag 509 || ||||| Sbjct: 457 atctgtcag 449 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 544 aaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaaca 595 |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 415 aaaatgctgctggacttcctctggagtacatgcatagtccacattgccaaca 364
>gb|AY054186.1| Arabidopsis thaliana AT5g51120/MWD22_6 mRNA, complete cds Length = 994 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 441 ctgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaactt 500 ||||| ||||||| |||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct: 530 ctgaacagcttctacttccacaaattcgacatacgcaaaacctttaggttgaccaaactt 471 Query: 501 gtcagtcag 509 || ||||| Sbjct: 470 atctgtcag 462 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 544 aaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaaca 595 |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 428 aaaatgctgctggacttcctctggagtacatgcatagtccacattgccaaca 377
>gb|AY084464.1| Arabidopsis thaliana clone 10876 mRNA, complete sequence Length = 1078 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 441 ctgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaactt 500 ||||| ||||||| |||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct: 551 ctgaacagcttctacttccacaaattcgacatacgcaaaacctttaggttgaccaaactt 492 Query: 501 gtcagtcag 509 || ||||| Sbjct: 491 atctgtcag 483 Score = 63.9 bits (32), Expect = 7e-07 Identities = 47/52 (90%) Strand = Plus / Minus Query: 544 aaaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaaca 595 |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct: 449 aaaatgctgctggacttcctctggagtacatgcatagtccacattgccaaca 398
>dbj|AB023044.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD22 Length = 87180 Score = 65.9 bits (33), Expect = 2e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 441 ctgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaactt 500 ||||| ||||||| |||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct: 14605 ctgaacagcttctacttccacaaattcgacatacgcaaaacctttaggttgaccaaactt 14546 Query: 501 gtcagtcag 509 || ||||| Sbjct: 14545 atctgtcag 14537 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 544 aaaatgctgctgcacttcttctggagtgcatgcatagtc 582 |||||||||||| ||||| |||||||| ||||||||||| Sbjct: 14503 aaaatgctgctggacttcctctggagtacatgcatagtc 14465
>gb|AC121245.17| Medicago truncatula clone mth2-33g3, complete sequence Length = 125763 Score = 58.0 bits (29), Expect = 4e-05 Identities = 114/141 (80%), Gaps = 1/141 (0%) Strand = Plus / Minus Query: 442 tgaatagcttctgcttcaacaaattcaacataagcaaaacctttaggctgcccaaacttg 501 |||| ||||||| |||| |||||||| ||||||||| |||| || || || |||||||| Sbjct: 92041 tgaacagcttctacttcgacaaattctacataagcataacccttgggttggccaaactta 91982 Query: 502 tcagtcaggatagtcacttcggttgacggttccgcaagaattaaaatgctgctgcacttc 561 ||||| | ||||| || ||||| || || || || || | |||||||||||||| || Sbjct: 91981 tcagtgcgaatagtaaca-cggtttacagtaccacacgattggaaatgctgctgcacgtc 91923 Query: 562 ttctggagtgcatgcatagtc 582 ||| ||||| ||||||||||| Sbjct: 91922 ttcaggagtacatgcatagtc 91902
>ref|NM_125924.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G65260 mRNA, complete cds Length = 966 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 545 aaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaacaaaaac 600 ||||||||||| |||||||| || ||||| || || |||||||| ||||||||||| Sbjct: 368 aaatgctgctgaacttcttcaggtgtgcaagcgtaatcaacattgccaacaaaaac 313
>gb|BT000018.1| Arabidopsis thaliana poly(A)-binding protein II-like (At5g65260) mRNA, complete cds Length = 744 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 545 aaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaacaaaaac 600 ||||||||||| |||||||| || ||||| || || |||||||| ||||||||||| Sbjct: 335 aaatgctgctgaacttcttcaggtgtgcaagcgtaatcaacattgccaacaaaaac 280
>gb|AF386984.1|AF386984 Arabidopsis thaliana poly(A)-binding protein II-like (MQN23.20) mRNA, complete cds Length = 929 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 545 aaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaacaaaaac 600 ||||||||||| |||||||| || ||||| || || |||||||| ||||||||||| Sbjct: 368 aaatgctgctgaacttcttcaggtgtgcaagcgtaatcaacattgccaacaaaaac 313
>emb|BX830904.1|CNS09YS7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS38ZF12 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 805 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 545 aaatgctgctgcacttcttctggagtgcatgcatagtcaacatttccaacaaaaac 600 ||||||||||| |||||||| || ||||| || || |||||||| ||||||||||| Sbjct: 214 aaatgctgctgaacttcttcaggtgtgcaagcgtaatcaacattgccaacaaaaac 159
>ref|NM_121073.2| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G10350 transcript variant AT5G10350.1 mRNA, complete cds Length = 881 Score = 50.1 bits (25), Expect = 0.010 Identities = 82/101 (81%) Strand = Plus / Minus Query: 403 cgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaaca 462 ||||||||||||||||| ||| | |||| | |||||| || | ||||| |||| ||| Sbjct: 494 cgaccatgaagctctgattcattcagctgcagagcttcttgcacggcttccacttctaca 435 Query: 463 aattcaacataagcaaaacctttaggctgcccaaacttgtc 503 || || ||||||||||| || || ||||| ||||||||||| Sbjct: 434 aactccacataagcaaatccctttggctgtccaaacttgtc 394
>ref|NM_180472.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT5G10350 transcript variant AT5G10350.2 mRNA, complete cds Length = 1006 Score = 50.1 bits (25), Expect = 0.010 Identities = 82/101 (81%) Strand = Plus / Minus Query: 403 cgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaaca 462 ||||||||||||||||| ||| | |||| | |||||| || | ||||| |||| ||| Sbjct: 494 cgaccatgaagctctgattcattcagctgcagagcttcttgcacggcttccacttctaca 435 Query: 463 aattcaacataagcaaaacctttaggctgcccaaacttgtc 503 || || ||||||||||| || || ||||| ||||||||||| Sbjct: 434 aactccacataagcaaatccctttggctgtccaaacttgtc 394
>emb|AL353995.1|ATF12B17 Arabidopsis thaliana DNA chromosome 5, BAC clone F12B17 (ESSA project) Length = 113053 Score = 50.1 bits (25), Expect = 0.010 Identities = 82/101 (81%) Strand = Plus / Minus Query: 403 cgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaaca 462 ||||||||||||||||| ||| | |||| | |||||| || | ||||| |||| ||| Sbjct: 108829 cgaccatgaagctctgattcattcagctgcagagcttcttgcacggcttccacttctaca 108770 Query: 463 aattcaacataagcaaaacctttaggctgcccaaacttgtc 503 || || ||||||||||| || || ||||| ||||||||||| Sbjct: 108769 aactccacataagcaaatccctttggctgtccaaacttgtc 108729
>emb|BX829898.1|CNS0A187 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB44ZG03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 501 Score = 50.1 bits (25), Expect = 0.010 Identities = 82/101 (81%) Strand = Plus / Minus Query: 403 cgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaaca 462 ||||||||||||||||| ||| | |||| | |||||| || | ||||| |||| ||| Sbjct: 140 cgaccatgaagctctgattcattcagctgcagagcttcttgcacggcttccacttctaca 81 Query: 463 aattcaacataagcaaaacctttaggctgcccaaacttgtc 503 || || ||||||||||| || || ||||| ||||||||||| Sbjct: 80 aactccacataagcaaatccctttggctgtccaaacttgtc 40
>emb|BX829525.1|CNS0A1G5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB19ZA11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1847 Score = 50.1 bits (25), Expect = 0.010 Identities = 82/101 (81%) Strand = Plus / Minus Query: 403 cgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaaca 462 ||||||||||||||||| ||| | |||| | |||||| || | ||||| |||| ||| Sbjct: 1511 cgaccatgaagctctgattcattcagctgcagagcttcttgcacggcttccacttctaca 1452 Query: 463 aattcaacataagcaaaacctttaggctgcccaaacttgtc 503 || || ||||||||||| || || ||||| ||||||||||| Sbjct: 1451 aactccacataagcaaatccctttggctgtccaaacttgtc 1411
>gb|BT005003.1| Arabidopsis thaliana clone U20623 putative polyadenylate-binding protein II (PAB2) (At5g10350) mRNA, complete cds Length = 685 Score = 50.1 bits (25), Expect = 0.010 Identities = 82/101 (81%) Strand = Plus / Minus Query: 403 cgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaaca 462 ||||||||||||||||| ||| | |||| | |||||| || | ||||| |||| ||| Sbjct: 467 cgaccatgaagctctgattcattcagctgcagagcttcttgcacggcttccacttctaca 408 Query: 463 aattcaacataagcaaaacctttaggctgcccaaacttgtc 503 || || ||||||||||| || || ||||| ||||||||||| Sbjct: 407 aactccacataagcaaatccctttggctgtccaaacttgtc 367
>gb|BT003893.1| Arabidopsis thaliana clone RAFL15-13-K12 (R20623) putative polyadenylate-binding protein II (PAB2) (At5g10350) mRNA, complete cds Length = 889 Score = 50.1 bits (25), Expect = 0.010 Identities = 82/101 (81%) Strand = Plus / Minus Query: 403 cgaccatgaagctctgactcactaagcttgacagcttcctgaatagcttctgcttcaaca 462 ||||||||||||||||| ||| | |||| | |||||| || | ||||| |||| ||| Sbjct: 494 cgaccatgaagctctgattcattcagctgcagagcttcttgcacggcttccacttctaca 435 Query: 463 aattcaacataagcaaaacctttaggctgcccaaacttgtc 503 || || ||||||||||| || || ||||| ||||||||||| Sbjct: 434 aactccacataagcaaatccctttggctgtccaaacttgtc 394
>gb|AC114699.5| Rattus norvegicus 19 BAC CH230-235A3 (Children's Hospital Oakland Research Institute) complete sequence Length = 224930 Score = 44.1 bits (22), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Plus Query: 11 ttgattgctaagtnaatgtacataa 35 ||||||||||||| ||||||||||| Sbjct: 105488 ttgattgctaagtcaatgtacataa 105512
>gb|AC102288.11| Mus musculus chromosome 18, clone RP24-346H24, complete sequence Length = 154552 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 gggagctctcccataaccacc 272 ||||||||||||||||||||| Sbjct: 143694 gggagctctcccataaccacc 143674
>gb|AF488416.1| Zea mays chromosome 9 BAC 9C20 complete sequence Length = 143300 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 676 cttggcctgcatctcgcggag 696 ||||||||||||||||||||| Sbjct: 137738 cttggcctgcatctcgcggag 137758
>gb|AC101777.8| Mus musculus chromosome 1, clone RP24-123J3, complete sequence Length = 177788 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 609 aatccatctcttcttttgctt 629 ||||||||||||||||||||| Sbjct: 169253 aatccatctcttcttttgctt 169233
>gb|AE006255.1| Lactococcus lactis subsp. lactis IL1403 section 17 of 218 of the complete genome Length = 10098 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 tatccgtgacttgattgctaa 21 ||||||||||||||||||||| Sbjct: 2360 tatccgtgacttgattgctaa 2380
>gb|AC004851.2| Homo sapiens PAC clone RP4-665P5 from 7, complete sequence Length = 71627 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 598 aacagaacgagaatccatctc 618 ||||||||||||||||||||| Sbjct: 61143 aacagaacgagaatccatctc 61163
>gb|AC091296.3| Pan troglodytes clone RP43-109G19, complete sequence Length = 185979 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 aacagaacgagaatccatctc 618 ||||||||||||||||||||| Sbjct: 66104 aacagaacgagaatccatctc 66084
>gb|AC011478.3| Homo sapiens chromosome 19 clone CTC-565M22, complete sequence Length = 100147 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 aacagaacgagaatccatctc 618 ||||||||||||||||||||| Sbjct: 51399 aacagaacgagaatccatctc 51379
>gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, complete sequence Length = 178710 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 aacagaacgagaatccatctc 618 ||||||||||||||||||||| Sbjct: 105798 aacagaacgagaatccatctc 105778
>gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, complete sequence Length = 192542 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 aatccatctcttcttttgctt 629 ||||||||||||||||||||| Sbjct: 161469 aatccatctcttcttttgctt 161489
>gb|AC027229.17| Homo sapiens chromosome 18, clone RP11-737G21, complete sequence Length = 61501 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 598 aacagaacgagaatccatctc 618 ||||||||||||||||||||| Sbjct: 23857 aacagaacgagaatccatctc 23837
>gb|AC021302.11| Homo sapiens chromosome 18, clone RP11-203G13, complete sequence Length = 168535 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 598 aacagaacgagaatccatctc 618 ||||||||||||||||||||| Sbjct: 147370 aacagaacgagaatccatctc 147390
>gb|AY530950.1| Zea mays putative zinc finger protein (Z438D03.1), unknown (Z438D03.5), epsilon-COP (Z438D03.6), putative kinase (Z438D03.7), unknown (Z438D03.25), and C1-B73 (Z438D03.27) genes, complete cds Length = 185988 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 676 cttggcctgcatctcgcggag 696 ||||||||||||||||||||| Sbjct: 110252 cttggcctgcatctcgcggag 110272
>dbj|AK061346.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E12, full insert sequence Length = 1165 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 659 tgcatctccttggcgaccttg 679 ||||||||||||||||||||| Sbjct: 667 tgcatctccttggcgaccttg 647
>gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 map 4q25, complete sequence Length = 185566 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 535 gcaagaattaaaatgctgctg 555 ||||||||||||||||||||| Sbjct: 93057 gcaagaattaaaatgctgctg 93077
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 atagcttctgcttcaacaaattca 468 ||||||||||||||||||| |||| Sbjct: 559269 atagcttctgcttcaacaacttca 559246
>ref|XM_366814.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02890.4) partial mRNA Length = 1854 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 tttgccgaccatgaagctct 417 |||||||||||||||||||| Sbjct: 1128 tttgccgaccatgaagctct 1109
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 672 cgaccttggcctgcatctcgcgga 695 ||||||||||| |||||||||||| Sbjct: 466956 cgaccttggccagcatctcgcgga 466979
>gb|AY574035.1| Zea mays rust resistance protein rp3-1 (rp3-1) gene, complete cds; and truncated rust resistance protein rp3-2t (rp3-2) gene, complete sequence Length = 276326 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 676 cttggcctgcatctcgcgga 695 |||||||||||||||||||| Sbjct: 248099 cttggcctgcatctcgcgga 248118
>gb|AY316747.1| Rhizobium sp. NGR234 megaplasmid 2 contig 1, complete sequence Length = 357655 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 662 atctccttggcgaccttggc 681 |||||||||||||||||||| Sbjct: 305671 atctccttggcgaccttggc 305652
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 642 cattaggatctccgccttgcatct 665 ||||||| |||||||||||||||| Sbjct: 337815 cattaggttctccgccttgcatct 337838
>gb|AC087728.3| Papio anubis clone RP41-340H23, complete sequence Length = 198888 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 599 acagaacgagaatccatctc 618 |||||||||||||||||||| Sbjct: 141336 acagaacgagaatccatctc 141317
>ref|XM_651341.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (12.t00054) partial mRNA Length = 837 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 gattacacaacaaccatcac 100 |||||||||||||||||||| Sbjct: 453 gattacacaacaaccatcac 472
>gb|AC009508.3| Homo sapiens BAC clone RP11-564N1 from 7, complete sequence Length = 119414 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 537 aagaattaaaatgctgctgcactt 560 ||||||||||||||||||| |||| Sbjct: 5189 aagaattaaaatgctgctgaactt 5212
>gb|AC146050.3| Pan troglodytes BAC clone RP43-72L14 from 7, complete sequence Length = 154653 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 537 aagaattaaaatgctgctgcactt 560 ||||||||||||||||||| |||| Sbjct: 149518 aagaattaaaatgctgctgaactt 149541
>gb|AC091763.25| Mus musculus strain C57BL/6J clone rp23-198o2 map 10, complete sequence Length = 221545 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 tagcttctgcttcaacaaat 465 |||||||||||||||||||| Sbjct: 25685 tagcttctgcttcaacaaat 25666
>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1) gene, complete cds Length = 169976 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 676 cttggcctgcatctcgcgga 695 |||||||||||||||||||| Sbjct: 68214 cttggcctgcatctcgcgga 68195
>emb|BX927225.7| Zebrafish DNA sequence from clone CH211-106F9 in linkage group 6, complete sequence Length = 161068 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 tagttttgtcatgtgttgacaaaa 199 ||||||| |||||||||||||||| Sbjct: 73119 tagttttatcatgtgttgacaaaa 73142
>gb|AC165173.2| Zea mays clone ZMMBBb-125O19, complete sequence Length = 157660 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 676 cttggcctgcatctcgcgga 695 |||||||||||||||||||| Sbjct: 129567 cttggcctgcatctcgcgga 129586 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 676 cttggcctgcatctcgcgga 695 |||||||||||||||||||| Sbjct: 49104 cttggcctgcatctcgcgga 49085
>emb|AL139819.8| Human DNA sequence from clone RP11-34D15 on chromosome 10 Contains the 5' end of gene FLJ30135, the PKD2L1 gene for polycystic kidney disease 2-like 1, the SCD gene for stearoyl-CoA desaturase (delta-9-desturase), two novel genes and two CpG islands, complete sequence Length = 115278 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 actaagcttgacagcttcct 442 |||||||||||||||||||| Sbjct: 101487 actaagcttgacagcttcct 101506
>emb|AL157694.7| Human DNA sequence from clone RP11-157B21 on chromosome 13q12.2-13.3 Contains part of the DCAMKL1 gene for doublecortin and CaM kinase-like 1 (DCLK KIAA0369), complete sequence Length = 76339 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 461 caaattcaacataagcaaaa 480 |||||||||||||||||||| Sbjct: 17184 caaattcaacataagcaaaa 17165
>gb|AC166741.1| Brassica rapa subsp. pekinensis clone KBrH080C09, complete sequence Length = 132099 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 674 accttggcctgcatctcgcg 693 |||||||||||||||||||| Sbjct: 10017 accttggcctgcatctcgcg 9998
>emb|AL596169.1| Listeria innocua Clip11262 complete genome, segment 7/12 Length = 239050 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 585 catttccaacaaaaacagaacgag 608 ||||| |||||||||||||||||| Sbjct: 84252 catttacaacaaaaacagaacgag 84275
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 gctgctgcacttcttctgga 568 |||||||||||||||||||| Sbjct: 3225418 gctgctgcacttcttctgga 3225437
>gb|AC025647.9| Homo sapiens, clone RP11-316J7, complete sequence Length = 155663 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 acagaacgagaatccatctc 618 |||||||||||||||||||| Sbjct: 83143 acagaacgagaatccatctc 83162
>gb|AC090403.8| Homo sapiens chromosome 18, clone RP11-739N10, complete sequence Length = 181250 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tccatctcttcttttgcttc 630 |||||||||||||||||||| Sbjct: 87904 tccatctcttcttttgcttc 87923
>gb|AC083837.4| Homo sapiens chromosome 8, clone RP11-79H23, complete sequence Length = 166114 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 437 cttcctgaatagcttctgct 456 |||||||||||||||||||| Sbjct: 124599 cttcctgaatagcttctgct 124618
>gb|AC022176.6| Homo sapiens chromosome , clone RP11-149C3, complete sequence Length = 184026 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tccatctcttcttttgcttc 630 |||||||||||||||||||| Sbjct: 179268 tccatctcttcttttgcttc 179287
>ref|NM_001021695.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC16E9.12c), partial mRNA Length = 501 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 364 ccaggaacgttagtccgcttcggtgcaacctt 395 ||||||||||| |||||||| |||| |||||| Sbjct: 407 ccaggaacgtttgtccgcttgggtgtaacctt 376
>gb|AC153546.10| Mus musculus 10 BAC RP23-356P21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 207122 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 tagcttctgcttcaacaaat 465 |||||||||||||||||||| Sbjct: 30002 tagcttctgcttcaacaaat 30021
>gb|AF546189.1| Contiguous genomic DNA sequence comprising the 19-kDa-zein gene family from Zea mays, complete sequence Length = 116115 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 676 cttggcctgcatctcgcgga 695 |||||||||||||||||||| Sbjct: 90249 cttggcctgcatctcgcgga 90268
>gb|AY555143.1| Zea may BAC clone c573L14, complete sequence Length = 144792 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 676 cttggcctgcatctcgcgga 695 |||||||||||||||||||| Sbjct: 95246 cttggcctgcatctcgcgga 95227
>emb|AL590148.8| Zebrafish DNA sequence from clone RP71-30I22 in linkage group 8 Contains part of a novel gene for a protein similar to human FLJ12550, the pim1 gene for pim-1 oncogene (proviral integration site 1), part of a novel gene for a protein similar to vertebrate UDP-galactose transporters, a novel gene for a protein similar to vertebrate caldesmon 1 (CALD1) and a CpG island, complete sequence Length = 140984 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 caacatttccaacaaaaaca 601 |||||||||||||||||||| Sbjct: 140696 caacatttccaacaaaaaca 140677
>dbj|AP001359.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-820L6, complete sequences Length = 221535 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 acagaacgagaatccatctc 618 |||||||||||||||||||| Sbjct: 47384 acagaacgagaatccatctc 47403
>dbj|AP001924.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-166D19, complete sequence Length = 190360 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 acagaacgagaatccatctc 618 |||||||||||||||||||| Sbjct: 129023 acagaacgagaatccatctc 129042
>dbj|AP003474.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1942A3, complete sequence Length = 165901 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 acagaacgagaatccatctc 618 |||||||||||||||||||| Sbjct: 135024 acagaacgagaatccatctc 135043
>gb|AC174767.1| Gasterosteus aculeatus chromosome VMRC28-49C03, complete sequence Length = 136807 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 aattaaaatgctgctgcacttctt 563 ||||||||||||||| |||||||| Sbjct: 136674 aattaaaatgctgctccacttctt 136697
>gb|AC141473.4| Mus musculus BAC clone RP24-187J17 from 3, complete sequence Length = 178156 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 456 ttcaacaaattcaacataagcaaa 479 |||||||||||||||| ||||||| Sbjct: 177450 ttcaacaaattcaacagaagcaaa 177473
>gb|AC133160.4| Mus musculus BAC clone RP24-531K24 from chromosome 3, complete sequence Length = 163562 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 456 ttcaacaaattcaacataagcaaa 479 |||||||||||||||| ||||||| Sbjct: 71518 ttcaacaaattcaacagaagcaaa 71541
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 445 atagcttctgcttcaacaaattca 468 ||||||||||||||||||| |||| Sbjct: 564085 atagcttctgcttcaacaacttca 564062
>emb|AL138498.5|CNS01DWT Human chromosome 14 DNA sequence BAC R-168D12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 158885 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 599 acagaacgagaatccatctc 618 |||||||||||||||||||| Sbjct: 78454 acagaacgagaatccatctc 78473 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,573,059 Number of Sequences: 3902068 Number of extensions: 6573059 Number of successful extensions: 135128 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134738 Number of HSP's gapped (non-prelim): 374 length of query: 706 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 683 effective length of database: 17,143,297,704 effective search space: 11708872331832 effective search space used: 11708872331832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)