>gb|M36650.1|BLYGAPDH Barley glyceraldehyde-3-phosphate dehydrogenase mRNA, 3' end
          Length = 1141

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 44/49 (89%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                            
Query: 1   tctctggggcntgccacactnccctgtctcttcatgctttggctcattt 49
           ||||||||||   ||||||| |||||| |||||||||||||||||||||
Sbjct: 964 tctctggggcaaaccacact-ccctgtatcttcatgctttggctcattt 917

>gb|AC137154.2| Mus musculus BAC clone RP24-572L22 from chromosome 5, complete sequence
          Length = 173460

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    tgctttggctcattttctt 53
             |||||||||||||||||||
Sbjct: 43993 tgctttggctcattttctt 44011

>gb|AC090897.4| Homo sapiens chromosome 18, clone RP11-61D1, complete sequence
          Length = 157606

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 28     ctcttcatgctttggctcatttt 50
              |||||||||||||||||| ||||
Sbjct: 102161 ctcttcatgctttggctcttttt 102183

>emb|BX682557.11| Zebrafish DNA sequence from clone DKEY-288D17 in linkage group 3,
             complete sequence
          Length = 103591

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    tgctttggctcattttctt 53
             |||||||||||||||||||
Sbjct: 73844 tgctttggctcattttctt 73862

>gb|AC007240.2| Homo sapiens BAC clone RP11-83M8 from 2, complete sequence
          Length = 203250

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     cctgtctcttcatgctttg 41
              |||||||||||||||||||
Sbjct: 117487 cctgtctcttcatgctttg 117505

>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence
          Length = 215819

 Score = 38.2 bits (19), Expect = 1.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ccctgtctcttcatgcttt 40
             |||||||||||||||||||
Sbjct: 45090 ccctgtctcttcatgcttt 45108

>gb|AC113586.14| Mus musculus chromosome 8, clone RP23-17D24, complete sequence
          Length = 206445

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 27     tctcttcatgctttggct 44
              ||||||||||||||||||
Sbjct: 174957 tctcttcatgctttggct 174974

>gb|AC112997.10| Mus musculus chromosome 8, clone RP24-484I6, complete sequence
          Length = 191413

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     tctcttcatgctttggct 44
              ||||||||||||||||||
Sbjct: 156643 tctcttcatgctttggct 156626

>emb|CR394537.12| Zebrafish DNA sequence from clone CH211-119D19 in linkage group 16,
             complete sequence
          Length = 168543

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 35    tgctttggctcattttct 52
             ||||||||||||||||||
Sbjct: 54266 tgctttggctcattttct 54249

>emb|AL139087.13| Human DNA sequence from clone RP11-83D23 on chromosome 13q31.3-33.1,
              complete sequence
          Length = 170776

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 31     ttcatgctttggctcattttct 52
              ||||||| ||||||||||||||
Sbjct: 139923 ttcatgccttggctcattttct 139944

>ref|XM_790505.1| PREDICTED: Strongylocentrotus purpuratus similar to THAP domain
           containing 4 (LOC590920), partial mRNA
          Length = 228

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 34  atgctttggctcattttc 51
           ||||||||||||||||||
Sbjct: 174 atgctttggctcattttc 157

>ref|XM_775818.1| PREDICTED: Strongylocentrotus purpuratus similar to THAP domain
           containing 4 (LOC575415), mRNA
          Length = 510

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 34  atgctttggctcattttc 51
           ||||||||||||||||||
Sbjct: 201 atgctttggctcattttc 184

>emb|X17700.1|GALKBP Chicken KBP gene for kainate-binding protein
          Length = 1781

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 27  tctcttcatgctttggctcatt 48
           ||||||||| ||||||||||||
Sbjct: 724 tctcttcattctttggctcatt 703

>gb|AC005013.3| Homo sapiens BAC clone GS1-165L15 from 7, complete sequence
          Length = 195917

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 30     cttcatgctttggctcat 47
              ||||||||||||||||||
Sbjct: 104625 cttcatgctttggctcat 104608

>gb|AC046175.6| Homo sapiens chromosome 8, clone RP11-577O23, complete sequence
          Length = 194972

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 36    gctttggctcattttctt 53
             ||||||||||||||||||
Sbjct: 87477 gctttggctcattttctt 87494

>gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence
          Length = 174049

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 36    gctttggctcattttctt 53
             ||||||||||||||||||
Sbjct: 40435 gctttggctcattttctt 40452

>gb|AC012309.8| Homo sapiens chromosome 19 clone CTC-454I21, complete sequence
          Length = 170020

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    cttcatgctttggctcat 47
             ||||||||||||||||||
Sbjct: 23646 cttcatgctttggctcat 23629

>gb|AC010632.7| Homo sapiens chromosome 19 clone CTD-2293H3, complete sequence
          Length = 111221

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 30     cttcatgctttggctcat 47
              ||||||||||||||||||
Sbjct: 104682 cttcatgctttggctcat 104665

>gb|AC160050.2| Mus musculus BAC clone RP24-467L17 from chromosome 9, complete sequence
          Length = 158502

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 32    tcatgctttggctcattt 49
             ||||||||||||||||||
Sbjct: 25864 tcatgctttggctcattt 25881

>gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete sequence
          Length = 150564

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 36   gctttggctcattttctt 53
            ||||||||||||||||||
Sbjct: 1453 gctttggctcattttctt 1470

>gb|AC090676.11| Homo sapiens 12 BAC RP11-654D6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139802

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 22    ccctgtctcttcatgctt 39
             ||||||||||||||||||
Sbjct: 49414 ccctgtctcttcatgctt 49397

>ref|NM_205353.1| Gallus gallus kainate binding protein (LOC396300), mRNA
          Length = 1781

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 27  tctcttcatgctttggctcatt 48
           ||||||||| ||||||||||||
Sbjct: 724 tctcttcattctttggctcatt 703

>emb|BX294375.7| Zebrafish DNA sequence from clone DKEY-176M20 in linkage group 17,
             complete sequence
          Length = 188455

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 33    catgctttggctcatttt 50
             ||||||||||||||||||
Sbjct: 17017 catgctttggctcatttt 17034

>gb|AC152721.3| Mus musculus BAC clone RP23-425F13 from chromosome 5, complete sequence
          Length = 221637

 Score = 36.2 bits (18), Expect = 7.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     tgtctcttcatgctttgg 42
              ||||||||||||||||||
Sbjct: 180537 tgtctcttcatgctttgg 180520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 332,840
Number of Sequences: 3902068
Number of extensions: 332840
Number of successful extensions: 85054
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85014
Number of HSP's gapped (non-prelim): 40
length of query: 53
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 33
effective length of database: 17,155,003,908
effective search space: 566115128964
effective search space used: 566115128964
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)