>ref|XM_478772.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score =  123 bits (62), Expect = 4e-25
 Identities = 94/105 (89%)
 Strand = Plus / Minus

                                                                       
Query: 277 tcctgttccttctgcttttggatggcttcaacctttttcatgtactcntctgtgattttt 336
           ||||||||||||||||||||||| ||||| | ||||||||||||||| || || | ||||
Sbjct: 882 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagtaactttt 823

                                                        
Query: 337 tgtagatcggctgataaatccttcacattatcttcagaaagtttc 381
           |||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 822 tgtagatcagcggacaaatccttcacgttatcttcagaaagtttc 778

>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full
           insert sequence
          Length = 1226

 Score =  107 bits (54), Expect = 3e-20
 Identities = 93/105 (88%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                       
Query: 277 tcctgttccttctgcttttggatggcttcaacctttttcatgtactcntctgtgattttt 336
           ||||||||||||||||||||||| ||||| | ||||||||||||||| || || |  |||
Sbjct: 881 tcctgttccttctgcttttggatagcttcgatctttttcatgtactcgtcagt-aacttt 823

                                                        
Query: 337 tgtagatcggctgataaatccttcacattatcttcagaaagtttc 381
           |||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 822 tgtagatcagcggacaaatccttcacgttatcttcagaaagtttc 778

>gb|AY108240.1| Zea mays PCO100302 mRNA sequence
          Length = 776

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                       
Query: 309 ctttttcatgtactcntctgtgattttttgtagatcggctgataaatccttcacattatc 368
           ||||||||||||||| || |||| ||||||||| || ||||| ||||| |||||||| ||
Sbjct: 775 ctttttcatgtactcgtccgtgactttttgtaggtcagctgacaaatctttcacattgtc 716

                    
Query: 369 ttcagaaag 377
           |||||||||
Sbjct: 715 ttcagaaag 707

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                              
Query: 278      cctgttccttctgcttttggatggcttcaacctttttcatgtactc 323
                |||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 22954341 cctgttccttctgcttttggatagcttcgatctttttcatgtactc 22954296



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 336      ttgtagatcggctgataaatccttcacattatcttcagaaagtttc 381
                ||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 22954166 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttc 22954121

>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                           
Query: 278   cctgttccttctgcttttggatggcttcaacctttttcatgtactc 323
             |||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 29555 cctgttccttctgcttttggatagcttcgatctttttcatgtactc 29510



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 336   ttgtagatcggctgataaatccttcacattatcttcagaaagtttc 381
             ||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 29380 ttgtagatcagcggacaaatccttcacgttatcttcagaaagtttc 29335

>emb|AJ133751.1|SOL133751 Spinacia oleracea mRNA for chloroplast ribosome recycling factor
          Length = 1109

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                       
Query: 276 ctcctgttccttctgcttttggatggcttcaacctttttcatgtactcntctgtgatttt 335
           ||||||||| |||||||| | ||| |  |||||||| ||||||||||| || || |  ||
Sbjct: 827 ctcctgttctttctgcttgtagatagactcaaccttcttcatgtactcatcggtcaactt 768

                                                     
Query: 336 ttgtagatcggctgataaatccttcacattatcttcagaaag 377
            || ||||| || ||||  || |||||||||||||| |||||
Sbjct: 767 ctgcagatcagccgataggtctttcacattatcttccgaaag 726

>emb|AL136967.5| Human DNA sequence from clone RP1-149M18 on chromosome 6 Contains the
             NCR2 gene for natural cytotoxicity triggering receptor 2
             and four CpG islands, complete sequence
          Length = 115295

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 16    aaggaaactgagacttttagag 37
             ||||||||||||||||||||||
Sbjct: 14693 aaggaaactgagacttttagag 14714

>emb|CR450763.5| Zebrafish DNA sequence from clone CH211-180M24, complete sequence
          Length = 97685

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 291   cttttggatggcttcaaccttt 312
             ||||||||||||||||||||||
Sbjct: 13586 cttttggatggcttcaaccttt 13607

>gb|AC160655.2| Pan troglodytes BAC clone CH251-26F13 from chromosome unknown, complete
              sequence
          Length = 197508

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 16     aaggaaactgagacttttagag 37
              ||||||||||||||||||||||
Sbjct: 175070 aaggaaactgagacttttagag 175049

>gb|AC160057.2| Pan troglodytes BAC clone CH251-416M4 from chromosome unknown, complete
              sequence
          Length = 168684

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 16     aaggaaactgagacttttagag 37
              ||||||||||||||||||||||
Sbjct: 121788 aaggaaactgagacttttagag 121809

>gb|AY112589.1| Zea mays CL61174_1 mRNA sequence
          Length = 414

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 272 tcagctcctgttccttctgcttttggatgg 301
           |||| ||||||||||||||||| |||||||
Sbjct: 374 tcagttcctgttccttctgcttctggatgg 403

>gb|AC122253.5| Mus musculus BAC clone RP23-171K3 from chromosome 17, complete sequence
          Length = 197161

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 271    ctcagctcctgttccttctgc 291
              |||||||||||||||||||||
Sbjct: 191378 ctcagctcctgttccttctgc 191358

>gb|AC159229.2| Mus musculus BAC clone RP24-351I2 from chromosome 12, complete sequence
          Length = 134517

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 218   tcagaaatcttgtggccagtt 238
             |||||||||||||||||||||
Sbjct: 58113 tcagaaatcttgtggccagtt 58133

>gb|AC140361.2| Mus musculus BAC clone RP24-247B3 from chromosome 17, complete sequence
          Length = 157937

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 271    ctcagctcctgttccttctgc 291
              |||||||||||||||||||||
Sbjct: 115698 ctcagctcctgttccttctgc 115718

>gb|AC010449.7| Homo sapiens chromosome 5 clone CTD-2241P19, complete sequence
          Length = 80772

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    gcaaggaaactgagactttta 34
             |||||||||||||||||||||
Sbjct: 29265 gcaaggaaactgagactttta 29285

>gb|AC131036.4| Mus musculus chromosome 5, clone RP23-358D12, complete sequence
          Length = 197112

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 281   gttccttctgcttttggatggctt 304
             ||||| ||||||||||||||||||
Sbjct: 59770 gttccctctgcttttggatggctt 59793

>gb|AC163275.4| Mus musculus chromosome 5, clone RP23-458G12, complete sequence
          Length = 176643

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    gttccttctgcttttggatggctt 304
              ||||| ||||||||||||||||||
Sbjct: 104744 gttccctctgcttttggatggctt 104767

>gb|AC099062.2| Homo sapiens chromosome 1 clone RP5-1043L3, complete sequence
          Length = 101840

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 7     ataattagcaaggaaactgagactttta 34
             ||||||| ||||||||||||| ||||||
Sbjct: 61863 ataattaccaaggaaactgaggctttta 61836

>ref|XM_539204.2| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 1 (LOC482083), mRNA
          Length = 15160

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cagctcctgttccttctgct 292
            ||||||||||||||||||||
Sbjct: 6612 cagctcctgttccttctgct 6593

>ref|XM_852242.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 8 (LOC482083), mRNA
          Length = 14734

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cagctcctgttccttctgct 292
            ||||||||||||||||||||
Sbjct: 6186 cagctcctgttccttctgct 6167

>ref|XM_852201.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 7 (LOC482083), mRNA
          Length = 14734

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cagctcctgttccttctgct 292
            ||||||||||||||||||||
Sbjct: 6186 cagctcctgttccttctgct 6167

>ref|XM_852160.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 6 (LOC482083), mRNA
          Length = 15175

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cagctcctgttccttctgct 292
            ||||||||||||||||||||
Sbjct: 6627 cagctcctgttccttctgct 6608

>ref|XM_852120.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 5 (LOC482083), mRNA
          Length = 14749

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cagctcctgttccttctgct 292
            ||||||||||||||||||||
Sbjct: 6201 cagctcctgttccttctgct 6182

>ref|XM_852074.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 4 (LOC482083), mRNA
          Length = 14863

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cagctcctgttccttctgct 292
            ||||||||||||||||||||
Sbjct: 6315 cagctcctgttccttctgct 6296

>ref|XM_843706.1| PREDICTED: Canis familiaris similar to plectin 1 isoform 1,
            transcript variant 2 (LOC482083), mRNA
          Length = 14812

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 273  cagctcctgttccttctgct 292
            ||||||||||||||||||||
Sbjct: 6264 cagctcctgttccttctgct 6245

>emb|AL844892.5| Human DNA sequence from clone RP11-396M20 on chromosome 10 Contains the
             5' end of the GRID1 gene for glutamate receptor
             (ionotropic) delta 1, the 3' end of the gene for  friend
             of EBNA2 (FOE) (KIAA0261) and five CpG islands, complete
             sequence
          Length = 167780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   cttgctcagctcctgttcct 286
             ||||||||||||||||||||
Sbjct: 64036 cttgctcagctcctgttcct 64055

>gb|AF306784.1| Cherax quadricarinatus vitellogenin (vg) mRNA, complete cds
          Length = 7944

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  ccttcacattatcttcagaa 375
            ||||||||||||||||||||
Sbjct: 3880 ccttcacattatcttcagaa 3861

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 281     gttccttctgcttttggatg 300
               ||||||||||||||||||||
Sbjct: 2037164 gttccttctgcttttggatg 2037145

>gb|AC118290.7| Rattus norvegicus 2 BAC CH230-366D18 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210896

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    agtcttagcaagagtccaac 166
              ||||||||||||||||||||
Sbjct: 193966 agtcttagcaagagtccaac 193985

>emb|X72384.1|DCD2NLP D.carota D2 mRNA for glycine rich protein
          Length = 946

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 348 tgataaatccttcacattatcttc 371
           |||||| |||||||||||||||||
Sbjct: 600 tgataagtccttcacattatcttc 577

>emb|AL596086.9| Mouse DNA sequence from clone RP23-168C20 on chromosome 11 Contains the
              3' end of the Tex14 gene for testis expressed gene 14,
              complete sequence
          Length = 200501

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 273    cagctcctgttccttctgcttttg 296
              ||||||||||| ||||||||||||
Sbjct: 186131 cagctcctgtttcttctgcttttg 186154

>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence
          Length = 176095

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    tgttccttctgcttttggat 299
              ||||||||||||||||||||
Sbjct: 145310 tgttccttctgcttttggat 145291

>dbj|AK138983.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530045A01 product:hypothetical
            protein, full insert sequence
          Length = 2593

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 281  gttccttctgcttttggatggctt 304
            ||||| ||||||||||||||||||
Sbjct: 1241 gttccctctgcttttggatggctt 1264

>gb|AC026711.6| Homo sapiens chromosome 5 clone CTD-2093E18, complete sequence
          Length = 191309

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   tgttccttctgcttttggat 299
             ||||||||||||||||||||
Sbjct: 14094 tgttccttctgcttttggat 14075

>ref|XM_626980.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_700),
            partial mRNA
          Length = 5739

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  tcctgttccttctgcttttg 296
            ||||||||||||||||||||
Sbjct: 4173 tcctgttccttctgcttttg 4154


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,543,489
Number of Sequences: 3902068
Number of extensions: 3543489
Number of successful extensions: 76101
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76018
Number of HSP's gapped (non-prelim): 81
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)