>gb|AC138197.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055D24
              map C535, complete sequence
          Length = 174759

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 291    ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
              |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 167463 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 167411



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 368    gctctggaacacgatctccaccg 390
              |||||||||||||||||||||||
Sbjct: 167386 gctctggaacacgatctccaccg 167364

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 291     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8850764 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8850816



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 294      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24578395 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24578346



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 368     gctctggaacacgatctccaccg 390
               |||||||||||||||||||||||
Sbjct: 8850841 gctctggaacacgatctccaccg 8850863



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 323      gccatggaggtgcatggggtt 343
                |||||||||||||||||||||
Sbjct: 24569674 gccatggaggtgcatggggtt 24569654

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                    
Query: 291     ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
               |||||||| |||||||| ||||||| ||| | ||||||||||||||| |||||
Sbjct: 8922427 ccgagcccttgcgcgagcacgaacacgtcatagccatggaggtgcatcgggtt 8922479



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                                  
Query: 294      agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
                ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 24890065 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 24890016



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 368     gctctggaacacgatctccaccg 390
               |||||||||||||||||||||||
Sbjct: 8922504 gctctggaacacgatctccaccg 8922526



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 291      ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
                ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 24881376 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 24881324

>gb|AC113249.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0041L19, complete sequence
          Length = 155086

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                               
Query: 294   agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
             ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 55297 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 55248



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 291   ccgagcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
             ||||||||||| || |||| ||| |  || | |||||||||||||||||||||
Sbjct: 46608 ccgagcccctgtgcaaggaggaagacatcatagccatggaggtgcatggggtt 46556

>dbj|AK066963.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P21, full
            insert sequence
          Length = 2095

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 294  agcccctgcgcgaggacgaacatgtcctggccatggaggtgcatggggtt 343
            ||||||||||| |||| ||| | ||| | |||||||||||||||||||||
Sbjct: 1552 agcccctgcgcaaggaggaagacgtcatagccatggaggtgcatggggtt 1503

>gb|AF465469.1| Lolium perenne laccase LAC2-1 mRNA, complete cds
          Length = 2056

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 297  ccctgcgcgaggacgaacatgtcctggccatggaggtgcat 337
            ||||| ||||||||||| | ||| |||||||||||||||||
Sbjct: 1483 ccctgggcgaggacgaagaagtcgtggccatggaggtgcat 1443

>ref|NM_101674.3| Arabidopsis thaliana copper ion binding AT1G18140 mRNA, complete cds
          Length = 1931

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 231  ttcctcaccggcggatccaccaggttgtac 260
            |||||| ||||||||||||||| |||||||
Sbjct: 1599 ttcctctccggcggatccaccaagttgtac 1570

>gb|AF465470.1| Lolium perenne laccase LAC5-4 mRNA, complete cds
          Length = 2156

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 362  caccgggctctggaacacgatctccaccgt 391
            ||||||| |||||| |||||||||||||||
Sbjct: 1410 caccgggttctggagcacgatctccaccgt 1381

>gb|AC034107.5|T10F20 Sequence of BAC T10F20 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 81129

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 231   ttcctcaccggcggatccaccaggttgtac 260
             |||||| ||||||||||||||| |||||||
Sbjct: 45254 ttcctctccggcggatccaccaagttgtac 45283

>gb|AC069551.4|AC069551 Genomic sequence for Arabidopsis thaliana BAC T10O22 from chromosome I,
             complete sequence
          Length = 92948

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 231   ttcctcaccggcggatccaccaggttgtac 260
             |||||| ||||||||||||||| |||||||
Sbjct: 30558 ttcctctccggcggatccaccaagttgtac 30587

>ref|NM_192960.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1689

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 224  gacggtgttcctcaccggcggatccaccaggttgtac 260
            ||||||||||||| ||||||| || || |||||||||
Sbjct: 1506 gacggtgttcctctccggcgggtcgacgaggttgtac 1470

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 224     gacggtgttcctcaccggcgg 244
               |||||||||||||||||||||
Sbjct: 1591850 gacggtgttcctcaccggcgg 1591830

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 224     gacggtgttcctcaccggcgg 244
               |||||||||||||||||||||
Sbjct: 1974406 gacggtgttcctcaccggcgg 1974386

>gb|AE011767.1| Xanthomonas axonopodis pv. citri str. 306,  section 145 of 469 of the
            complete genome
          Length = 11162

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 224  gacggtgttcctcaccggcgg 244
            |||||||||||||||||||||
Sbjct: 4020 gacggtgttcctcaccggcgg 4000

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                     
Query: 224      gacggtgttcctcaccggcggatccaccaggttgtac 260
                ||||||||||||| ||||||| || || |||||||||
Sbjct: 25435486 gacggtgttcctctccggcgggtcgacgaggttgtac 25435522

>dbj|AP004317.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0663E10
          Length = 162297

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 224    gacggtgttcctcaccggcggatccaccaggttgtac 260
              ||||||||||||| ||||||| || || |||||||||
Sbjct: 125486 gacggtgttcctctccggcgggtcgacgaggttgtac 125522

>dbj|AK103094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118K21, full
            insert sequence
          Length = 2065

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 323  gccatggaggtgcatggggtt 343
            |||||||||||||||||||||
Sbjct: 1549 gccatggaggtgcatggggtt 1529

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 224     gacggtgttcctcaccggcgg 244
               |||||||||||||||||||||
Sbjct: 1996453 gacggtgttcctcaccggcgg 1996433

>gb|AY364319.1| Felis catus chromosome A2 endogenous virus endogenous feline leukemia
            virus enFeLV-GGAG, complete sequence
          Length = 9867

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 323  gccatggaggtgcatggggttagc 346
            ||||||||| ||||||||||||||
Sbjct: 7954 gccatggagatgcatggggttagc 7931

>gb|AY364318.1| Felis catus chromosome A1 endogenous virus endogenous feline leukemia
            virus enFeLV-AGTT, complete sequence
          Length = 9895

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 323  gccatggaggtgcatggggttagc 346
            ||||||||| ||||||||||||||
Sbjct: 7967 gccatggagatgcatggggttagc 7944

>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 248     caccaggttgtacgtcgcga 267
               ||||||||||||||||||||
Sbjct: 1635820 caccaggttgtacgtcgcga 1635801

>ref|XM_863193.1| PREDICTED: Canis familiaris hypothetical protein LOC611444
           (LOC611444), mRNA
          Length = 690

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 289 gcccgagcccctgcgcgagg 308
           ||||||||||||||||||||
Sbjct: 405 gcccgagcccctgcgcgagg 386

>emb|AL355350.8| Human DNA sequence from clone RP11-483B5 on chromosome 10 Contains two
             novel genes, the 5'end of the gene for VPS10 domain
             receptor protein SORCS 3 (SORCS3) and a CpG island,
             complete sequence
          Length = 153764

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    ggaagagtcgaatccaaagttgga 94
             ||||||||| ||||||||||||||
Sbjct: 91740 ggaagagtcaaatccaaagttgga 91717

>emb|AL161646.10| Human DNA sequence from clone RP11-127O4 on chromosome 10 Contains two
              novel genes, the 5'end of the gene for VPS10 domain
              receptor protein SORCS 3 (SORCS3) and one CpG island,
              complete sequence
          Length = 183833

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 71     ggaagagtcgaatccaaagttgga 94
              ||||||||| ||||||||||||||
Sbjct: 177883 ggaagagtcaaatccaaagttgga 177860

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 385      ccaccgtggcattgtaccgcagcc 408
                |||||||||||||||||| |||||
Sbjct: 16376913 ccaccgtggcattgtaccacagcc 16376890

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 385      ccaccgtggcattgtaccgcagcc 408
                |||||||||||||||||| |||||
Sbjct: 16330146 ccaccgtggcattgtaccacagcc 16330123

>emb|AL713907.3|CNS07YQ7 Oryza sativa chromosome 12, . BAC OJ1057_E03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127989

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 385   ccaccgtggcattgtaccgcagcc 408
             |||||||||||||||||| |||||
Sbjct: 75478 ccaccgtggcattgtaccacagcc 75501

>dbj|AP006420.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT15N15, TM0309,
             complete sequence
          Length = 89501

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    agcagcttggcaagatcttcagga 64
             ||||||||||||||||||| ||||
Sbjct: 43551 agcagcttggcaagatcttaagga 43574

>gb|L25632.1|FCVFELVAC Feline Leukemia Virus DNA sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 323  gccatggaggtgcatggggttagc 346
            ||||||||| ||||||||||||||
Sbjct: 1281 gccatggagatgcatggggttagc 1258

>gb|M25425.1|CATFLVEP Cat endogenous proviral feline leukemia virus envelope protein gene,
            complete cds
          Length = 2615

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 323  gccatggaggtgcatggggttagc 346
            ||||||||| ||||||||||||||
Sbjct: 1341 gccatggagatgcatggggttagc 1318


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,987,611
Number of Sequences: 3902068
Number of extensions: 2987611
Number of successful extensions: 57519
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57247
Number of HSP's gapped (non-prelim): 270
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)