| Clone Name | rbags8c03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U60754.1|TAU60754 Triticum aestivum delta-24-sterol methyltransferase (TA-MT) mRNA, complete cds Length = 1392 Score = 513 bits (259), Expect = e-142 Identities = 327/348 (93%), Gaps = 10/348 (2%) Strand = Plus / Minus Query: 298 caagcccgcttcttcaaaatgcatctttgc-----ctgaaagttgcttgctcattccgaa 352 |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| Sbjct: 1163 caagcccgcttcttcaaaatgcatctttgcattgcctgaaag----ttgctcattctgaa 1108 Query: 353 agaggcttccgaaccacaaagaagtacatcggggtgaagatttccttcttgccaccttcg 412 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 1107 agaggcttccgaaccacaaagaagtacaccggggtgaagatttccttcttgccaccttcg 1048 Query: 413 acaagaccttctgcggccttctctaagaaactagagaccctctggctgccttcaggagct 472 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 1047 acaagaccttccgcggccttctctaagaagctagagaccctctggctgccttccggagcc 988 Query: 473 agaccaacgtattccaatgccttgaccatattgcgagtaattattcgtcccatggtagtc 532 |||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 987 agaccaacatattccaataccttgaccatattgcgagtaattattcgtcccacggtagtc 928 Query: 533 aaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtaccaaggcaatgga 592 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 aaccggaaactactcaaagaaaaccgacttgggtccaagggcaagtaccaaggcaatgga 868 Query: 593 gaatcttcagcaagnatccttatcccaaataacctcaaacccagcatc 640 |||||||||||||| |||||| |||||||||||||||||||||||||| Sbjct: 867 gaatcttcagcaag-atccttgtcccaaataacctcaaacccagcatc 821 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Minus Query: 95 gggaggaaaactgcaactagcttatttatgccactaatagcttaccacaatggtctcaaa 154 |||| |||||||||| |||||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 1376 gggaagaaaactgcatctagcttatttatgccactaatagcttagcacaatggtgtcaaa 1317 Query: 155 ctgtccgttaatc 167 | ||| ||||||| Sbjct: 1316 cagtcagttaatc 1304
>ref|XM_477078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1525 Score = 224 bits (113), Expect = 3e-55 Identities = 254/300 (84%), Gaps = 1/300 (0%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 |||||||| || | |||||| ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 1140 gctcattctgagataggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 1081 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 |||||||||||||| |||||||| || ||||||||||| || |||| ||||| | || Sbjct: 1080 ttgccaccttcgacgagaccttcagctgccttctctaaaaagttagataccctttcactt 1021 Query: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520 |||| || || || || ||||||||||||||||| ||||| ||||||||||| || Sbjct: 1020 ccttgtggggcaaggccgacgtattccaatgccttcaccattgtgcgagtaattgcacgc 961 Query: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580 |||| ||||||| ||||| |||||||| |||||||| ||||| |||||||||| |||| Sbjct: 960 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 901 Query: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaacccagcatc 640 ||||| | || |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 900 caaggaaccggggaatcttcagcaagg-tctttatcccaaataacctcaaacccagcatc 842
>dbj|AK100653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D19, full insert sequence Length = 2883 Score = 224 bits (113), Expect = 3e-55 Identities = 254/300 (84%), Gaps = 1/300 (0%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 |||||||| || | |||||| ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 2597 gctcattctgagataggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 2538 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 |||||||||||||| |||||||| || ||||||||||| || |||| ||||| | || Sbjct: 2537 ttgccaccttcgacgagaccttcagctgccttctctaaaaagttagataccctttcactt 2478 Query: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520 |||| || || || || ||||||||||||||||| ||||| ||||||||||| || Sbjct: 2477 ccttgtggggcaaggccgacgtattccaatgccttcaccattgtgcgagtaattgcacgc 2418 Query: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580 |||| ||||||| ||||| |||||||| |||||||| ||||| |||||||||| |||| Sbjct: 2417 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 2358 Query: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaacccagcatc 640 ||||| | || |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 2357 caaggaaccggggaatcttcagcaagg-tctttatcccaaataacctcaaacccagcatc 2299
>dbj|AK072893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149L23, full insert sequence Length = 1526 Score = 224 bits (113), Expect = 3e-55 Identities = 254/300 (84%), Gaps = 1/300 (0%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 |||||||| || | |||||| ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 1141 gctcattctgagataggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 1082 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 |||||||||||||| |||||||| || ||||||||||| || |||| ||||| | || Sbjct: 1081 ttgccaccttcgacgagaccttcagctgccttctctaaaaagttagataccctttcactt 1022 Query: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520 |||| || || || || ||||||||||||||||| ||||| ||||||||||| || Sbjct: 1021 ccttgtggggcaaggccgacgtattccaatgccttcaccattgtgcgagtaattgcacgc 962 Query: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580 |||| ||||||| ||||| |||||||| |||||||| ||||| |||||||||| |||| Sbjct: 961 cccacagtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtac 902 Query: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaacccagcatc 640 ||||| | || |||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 901 caaggaaccggggaatcttcagcaagg-tctttatcccaaataacctcaaacccagcatc 843
>gb|U60755.1|TAU60755 Triticum aestivum delta-24-sterol methyltransferase (TA-MT) gene, complete cds Length = 4749 Score = 220 bits (111), Expect = 4e-54 Identities = 127/131 (96%), Gaps = 1/131 (0%) Strand = Plus / Minus Query: 497 accatattgcgagtaattattcgtcccatggtagtcaaccggaaactactcaatgaaaac 556 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 3534 accatattgcgagtaattattcgtcccacggtagtcaaccggaaactactcaatgaaaac 3475 Query: 557 cgacttgggtccaagggcaagtaccaaggcaatggagaatcttcagcaagnatccttatc 616 |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || Sbjct: 3474 cgacttgggtccaagggcaagtaccaaggcaacggagaatcttcagcaag-atccttgtc 3416 Query: 617 ccaaataacct 627 ||||||||||| Sbjct: 3415 ccaaataacct 3405 Score = 151 bits (76), Expect = 3e-33 Identities = 94/100 (94%) Strand = Plus / Minus Query: 400 cttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggct 459 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 4538 cttgccaccttcaacaagaccttccgcggccttctctaagaaactagagaccctctggct 4479 Query: 460 gccttcaggagctagaccaacgtattccaatgccttgacc 499 |||||| ||||| |||||||| ||||||||| |||||||| Sbjct: 4478 gccttccggagccagaccaacatattccaataccttgacc 4439 Score = 107 bits (54), Expect = 4e-20 Identities = 57/58 (98%) Strand = Plus / Minus Query: 343 tcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4749 tcattctgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 4692
>gb|AF045570.1|AF045570 Zea mays (S)-adenosyl-L-methionine:delta 24-sterol methyltransferase mRNA, complete cds Length = 1497 Score = 218 bits (110), Expect = 2e-53 Identities = 249/294 (84%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 ||||||||| ||||||||||||||| | |||||||||||| || |||||||| |||||| Sbjct: 1102 gctcattccagaagaggcttccgaacaaaaaagaagtacattggcgtgaagatctccttc 1043 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 || || || || || || |||||||| |||||||| | ||||||||||||||||| ||| Sbjct: 1042 tttccgccctctaccagcccttctgcagccttctccaggaaactagagaccctctcactg 983 Query: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520 || | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || ||| Sbjct: 982 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 923 Query: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580 |||| | ||||| ||||| ||||||| || || || ||||| ||||||||||||||| Sbjct: 922 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 863 Query: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaaccc 634 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 862 caaggcaagggagaatcttcagcaag-atccttatcccaaacaacctcaaaccc 810
>gb|AY103656.1| Zea mays PCO072714 mRNA sequence Length = 1665 Score = 210 bits (106), Expect = 4e-51 Identities = 248/294 (84%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 ||||||||| ||||||||||||||| | |||||||||||| || |||||||| |||||| Sbjct: 1277 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 1218 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 || || || || || || |||||||| |||||||| | |||| |||||||||||| ||| Sbjct: 1217 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 1158 Query: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520 || | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || ||| Sbjct: 1157 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 1098 Query: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580 |||| | ||||| ||||| ||||||| || || || ||||| ||||||||||||||| Sbjct: 1097 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 1038 Query: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaaccc 634 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 1037 caaggcaagggagaatcttcagcaag-atccttatcccaaacaacctcaaaccc 985
>gb|U79669.1|ZMU79669 Zea mays endosperm C-24 sterol methyltransferase (ESMT1) mRNA, complete cds Length = 1383 Score = 210 bits (106), Expect = 4e-51 Identities = 248/294 (84%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 ||||||||| ||||||||||||||| | |||||||||||| || |||||||| |||||| Sbjct: 1114 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 1055 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 || || || || || || |||||||| |||||||| | |||| |||||||||||| ||| Sbjct: 1054 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 995 Query: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520 || | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || ||| Sbjct: 994 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 935 Query: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580 |||| | ||||| ||||| ||||||| || || || ||||| ||||||||||||||| Sbjct: 934 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 875 Query: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaaccc 634 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 874 caaggcaagggagaatcttcagcaag-atccttatcccaaacaacctcaaaccc 822
>gb|BT018799.1| Zea mays clone EL01N0528H08.d mRNA sequence Length = 1589 Score = 194 bits (98), Expect = 2e-46 Identities = 246/294 (83%), Gaps = 1/294 (0%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 ||||||||| ||||||||||||||| | |||||||||||| || |||||||| |||||| Sbjct: 1222 gctcattccagaagaggcttccgaacaagaaagaagtacattggcgtgaagatctccttc 1163 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 || || || || || || |||||||| |||||||| | |||| |||||||||||| ||| Sbjct: 1162 tttccgccctctaccagcccttctgcagccttctccaggaaattagagaccctctcactg 1103 Query: 461 ccttcaggagctagaccaacgtattccaatgccttgaccatattgcgagtaattattcgt 520 || | ||||| ||||||||||| |||| ||||||||||| |||| ||||| || ||| Sbjct: 1102 ccctgcggagcaagaccaacgtactccagggccttgaccattgtgcgggtaatcatgcgt 1043 Query: 521 cccatggtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtac 580 |||| | ||||| ||||| ||||||| || || || ||||| ||||||||||||||| Sbjct: 1042 cccacagaggtcaaacggaagctactcagggagaatcggcttggatccaagggcaagtac 983 Query: 581 caaggcaatggagaatcttcagcaagnatccttatcccaaataacctcaaaccc 634 |||||||| ||||||||||||||||| |||||||| |||| |||||||||||| Sbjct: 982 caaggcaagggagaatcttcagcaag-atccttatagcaaacaacctcaaaccc 930
>gb|AF042332.1|AF042332 Oryza sativa subsp. japonica cycloartenol-C24-methyltransferase mRNA, complete cds Length = 1629 Score = 129 bits (65), Expect = 1e-26 Identities = 137/160 (85%), Gaps = 1/160 (0%) Strand = Plus / Minus Query: 481 gtattccaatgccttgaccatattgcgagtaattattcgtcccatggtagtcaaccggaa 540 ||||||||||||||| ||||| ||||||||||| || |||| ||||||| ||||| Sbjct: 1074 gtattccaatgccttcaccattgtgcgagtaattgcacgccccacagtagtcagacggaa 1015 Query: 541 actactcaatgaaaaccgacttgggtccaagggcaagtaccaaggcaatggagaatcttc 600 |||||||| |||||||| ||||| |||||||||| ||||||||| | || |||||||| Sbjct: 1014 gctactcaaggaaaaccggcttggatccaagggcaggtaccaaggaaccggggaatcttc 955 Query: 601 agcaagnatccttatcccaaataacctcaaacccagcatc 640 |||||| || ||||||||||||||||||||||||||||| Sbjct: 954 agcaagg-tctttatcccaaataacctcaaacccagcatc 916 Score = 127 bits (64), Expect = 5e-26 Identities = 133/156 (85%) Strand = Plus / Minus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 |||||||| || | |||||| ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 1229 gctcattctgagataggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 1170 Query: 401 ttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggctg 460 |||||||||||||| |||||||| || ||||||||||| || |||| ||||| | || Sbjct: 1169 ttgccaccttcgacgagaccttcagctgccttctctaaaaagttagataccctttcactt 1110 Query: 461 ccttcaggagctagaccaacgtattccaatgccttg 496 |||| || || || || |||||||||||||||||| Sbjct: 1109 ccttgtggggcaaggccgacgtattccaatgccttg 1074
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 83.8 bits (42), Expect = 6e-13 Identities = 87/101 (86%), Gaps = 1/101 (0%) Strand = Plus / Plus Query: 527 gtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtaccaaggc 586 ||||||| ||||| |||||||| |||||||| ||||| |||||||||| ||||||||| Sbjct: 5784578 gtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtaccaagga 5784637 Query: 587 aatggagaatcttcagcaagnatccttatcccaaataacct 627 | || |||||||||||||| || |||||||||||||||| Sbjct: 5784638 accggggaatcttcagcaagg-tctttatcccaaataacct 5784677 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 |||||||| || | |||||| ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 5783524 gctcattctgagataggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 5783583 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 400 cttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggct 459 ||||||||||||||| |||||||| || ||||||||||| || |||| ||||| | || Sbjct: 5783738 cttgccaccttcgacgagaccttcagctgccttctctaaaaagttagataccctttcact 5783797 Query: 460 gccttcaggagctagaccaacgtattccaatgcctt 495 |||| || || || || ||||||||||||||||| Sbjct: 5783798 tccttgtggggcaaggccgacgtattccaatgcctt 5783833
>dbj|AP003943.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1119_B04 Length = 151721 Score = 83.8 bits (42), Expect = 6e-13 Identities = 87/101 (86%), Gaps = 1/101 (0%) Strand = Plus / Plus Query: 527 gtagtcaaccggaaactactcaatgaaaaccgacttgggtccaagggcaagtaccaaggc 586 ||||||| ||||| |||||||| |||||||| ||||| |||||||||| ||||||||| Sbjct: 91606 gtagtcagacggaagctactcaaggaaaaccggcttggatccaagggcaggtaccaagga 91665 Query: 587 aatggagaatcttcagcaagnatccttatcccaaataacct 627 | || |||||||||||||| || |||||||||||||||| Sbjct: 91666 accggggaatcttcagcaagg-tctttatcccaaataacct 91705 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 341 gctcattccgaaagaggcttccgaaccacaaagaagtacatcggggtgaagatttccttc 400 |||||||| || | |||||| ||||||| ||||||||||||||| ||||||||||||||| Sbjct: 90552 gctcattctgagataggcttgcgaaccaaaaagaagtacatcggcgtgaagatttccttc 90611 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 400 cttgccaccttcgacaagaccttctgcggccttctctaagaaactagagaccctctggct 459 ||||||||||||||| |||||||| || ||||||||||| || |||| ||||| | || Sbjct: 90766 cttgccaccttcgacgagaccttcagctgccttctctaaaaagttagataccctttcact 90825 Query: 460 gccttcaggagctagaccaacgtattccaatgcctt 495 |||| || || || || ||||||||||||||||| Sbjct: 90826 tccttgtggggcaaggccgacgtattccaatgcctt 90861
>gb|U81312.1|NTU81312 Nicotiana tabacum S-adenosyl-methionine-sterol-C-methyltransferase mRNA, complete cds Length = 1444 Score = 69.9 bits (35), Expect = 1e-08 Identities = 74/87 (85%) Strand = Plus / Minus Query: 356 ggcttccgaaccacaaagaagtacatcggggtgaagatttccttcttgccaccttcgaca 415 ||||| |||||||| ||||||||||| || ||||| || | |||||| |||| ||||| Sbjct: 1133 ggcttgcgaaccacgaagaagtacattggtgtgaaaatccctttcttggcaccaccgaca 1074 Query: 416 agaccttctgcggccttctctaagaaa 442 ||||||||||| || |||||||||||| Sbjct: 1073 agaccttctgcagctttctctaagaaa 1047
>gb|BT013908.1| Lycopersicon esculentum clone 132905F, mRNA sequence Length = 1437 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 356 ggcttccgaaccacaaagaagtacatcggggtgaagatttccttcttgccaccttcgaca 415 ||||| ||||||| ||||| |||||||| |||||||| | |||||| |||| | ||| Sbjct: 1122 ggcttgcgaaccaagaagaaatacatcggtgtgaagatccctttcttggcaccaccaaca 1063 Query: 416 agaccttctgcggccttctctaagaaa 442 |||||||||||||| || ||||||||| Sbjct: 1062 agaccttctgcggctttttctaagaaa 1036
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 112 tagcttatttatgccactaatagctt 137 ||||||||||||| |||||||||||| Sbjct: 1737195 tagcttatttatgtcactaatagctt 1737170
>gb|AE014270.1| Streptococcus agalactiae 2603V/R section 80 of 100 of the complete genome Length = 25914 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 112 tagcttatttatgccactaatagctt 137 ||||||||||||| |||||||||||| Sbjct: 19776 tagcttatttatgtcactaatagctt 19751
>emb|AL766853.1|SAG766853 Streptococcus agalactiae NEM316 complete genome, segment 11 Length = 122050 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 112 tagcttatttatgccactaatagctt 137 ||||||||||||| |||||||||||| Sbjct: 45539 tagcttatttatgtcactaatagctt 45514
>gb|AC026403.4| Homo sapiens chromosome 5 clone CTB-63M22, complete sequence Length = 138536 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 402 tgccaccttcgacaagaccttc 423 |||||||||||||||||||||| Sbjct: 78428 tgccaccttcgacaagaccttc 78449
>gb|AC167812.4| Mus musculus BAC clone RP24-299F5 from chromosome 18, complete sequence Length = 193523 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 cctctggctgccttcaggagctaga 475 |||||||||||||||||||| |||| Sbjct: 14603 cctctggctgccttcaggagataga 14579
>emb|AL355475.7| Human DNA sequence from clone RP1-241M7 on chromosome 1q43-44, complete sequence Length = 84707 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 tatgccactaatagcttaccacaat 145 ||||||||| ||||||||||||||| Sbjct: 65799 tatgccactcatagcttaccacaat 65823
>emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on chromosome 9q34.13-34.3 Contains the GTF3C5 gene for general transcription factor IIIC polypeptide 5 63kDa, the CEL gene for carboxyl ester lipase (bile salt-stimulated lipase), the CELP gene for carboxyl ester lipase pseudogene, the RALGDS gene for ral guanine nucleotide dissociation stimulator, the gene for Forssman glycolipid synthetase (FS), three novel genes and six CpG islands, complete sequence Length = 152863 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 ctctggctgccttcaggagct 472 ||||||||||||||||||||| Sbjct: 112416 ctctggctgccttcaggagct 112436
>dbj|AK079117.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430017A01 product:unclassifiable, full insert sequence Length = 4610 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 451 cctctggctgccttcaggagctaga 475 |||||||||||||||||||| |||| Sbjct: 1298 cctctggctgccttcaggagataga 1322
>gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, complete sequence Length = 198440 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 451 cctctggctgccttcaggagctaga 475 |||||||||||||||||||| |||| Sbjct: 46560 cctctggctgccttcaggagataga 46584
>gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complete sequence Length = 40203 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 452 ctctggctgccttcaggagct 472 ||||||||||||||||||||| Sbjct: 13291 ctctggctgccttcaggagct 13311
>gb|AE009148.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 174 of 256 of the complete sequence Length = 10938 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cttcttgccaccttcgacaa 416 |||||||||||||||||||| Sbjct: 9944 cttcttgccaccttcgacaa 9963
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 atcggggtgaagatttccttcttg 403 ||||||||||||| |||||||||| Sbjct: 1617744 atcggggtgaagaattccttcttg 1617721
>ref|XM_846462.1| PREDICTED: Canis familiaris similar to spectrin domain with coiled-coils 1, transcript variant 2 (LOC489524), mRNA Length = 3207 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 agagaccctctggctgcctt 464 |||||||||||||||||||| Sbjct: 2848 agagaccctctggctgcctt 2867
>ref|XM_546643.2| PREDICTED: Canis familiaris similar to spectrin domain with coiled-coils 1, transcript variant 1 (LOC489524), mRNA Length = 3180 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 agagaccctctggctgcctt 464 |||||||||||||||||||| Sbjct: 2821 agagaccctctggctgcctt 2840
>ref|XM_858856.1| PREDICTED: Canis familiaris similar to spectrin domain with coiled-coils 1, transcript variant 3 (LOC489524), mRNA Length = 3207 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 agagaccctctggctgcctt 464 |||||||||||||||||||| Sbjct: 2848 agagaccctctggctgcctt 2867
>emb|BX936358.10| Zebrafish DNA sequence from clone CH211-159A10 in linkage group 3, complete sequence Length = 165674 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 aaaatgcatctttgcctgaa 332 |||||||||||||||||||| Sbjct: 144064 aaaatgcatctttgcctgaa 144083
>gb|AC149594.2| Xenopus tropicalis chromosome CH216-62P2, complete sequence Length = 167602 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 442 actagagaccctctggctgc 461 |||||||||||||||||||| Sbjct: 10682 actagagaccctctggctgc 10701
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 cttcttgccaccttcgacaa 416 |||||||||||||||||||| Sbjct: 1930298 cttcttgccaccttcgacaa 1930317
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atcgtacacacacttgtttg 56 |||||||||||||||||||| Sbjct: 10849235 atcgtacacacacttgtttg 10849216
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0025P13 Length = 133242 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 atcgtacacacacttgtttg 56 |||||||||||||||||||| Sbjct: 36251 atcgtacacacacttgtttg 36232
>emb|CR847509.9| Zebrafish DNA sequence from clone DKEY-29B22 in linkage group 3, complete sequence Length = 157983 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 aaaatgcatctttgcctgaa 332 |||||||||||||||||||| Sbjct: 108152 aaaatgcatctttgcctgaa 108133 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,319,937 Number of Sequences: 3902068 Number of extensions: 4319937 Number of successful extensions: 70496 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70359 Number of HSP's gapped (non-prelim): 121 length of query: 640 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 617 effective length of database: 17,143,297,704 effective search space: 10577414683368 effective search space used: 10577414683368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)