ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LYOX_BOVIN (P33072) Protein-lysine 6-oxidase precursor (EC 1.4.3... 28 4.7
2LYOX_RAT (P16636) Protein-lysine 6-oxidase precursor (EC 1.4.3.1... 28 4.7
3CDH_PHACH (Q01738) Cellobiose dehydrogenase precursor (EC 1.1.99... 28 8.0

>LYOX_BOVIN (P33072) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl|
           oxidase)
          Length = 418

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 179 SWSWVGMAQRVHKLNEGGNYXLLRHSTQ 96
           SW W    Q  H ++E  +Y LL  STQ
Sbjct: 286 SWEWHSCHQHYHSMDEFSHYDLLDASTQ 313



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>LYOX_RAT (P16636) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl|
           oxidase)
          Length = 411

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 179 SWSWVGMAQRVHKLNEGGNYXLLRHSTQ 96
           SW W    Q  H ++E  +Y LL  STQ
Sbjct: 279 SWEWHSCHQHYHSMDEFSHYDLLDASTQ 306



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>CDH_PHACH (Q01738) Cellobiose dehydrogenase precursor (EC 1.1.99.18) (CDH)|
           (Cellobiose-quinone oxidoreductase)
          Length = 773

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -3

Query: 185 ATSWSWVGMAQRVHKLNEGGNYXLLRHSTQTWCFS 81
           +T W WV   Q   + N GG   +       W FS
Sbjct: 130 STHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFS 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,206,962
Number of Sequences: 219361
Number of extensions: 669832
Number of successful extensions: 1622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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