ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8b24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK107538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 278 2e-71
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
3dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
4dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
5ref|XM_476314.1| Oryza sativa (japonica cultivar-group), predic... 139 1e-29
6gb|DQ000639.1| Zea mays clone 3530_1_147_1C02 hypro2 pseudogene ... 139 1e-29
7dbj|AK065263.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
8gb|DQ186637.1| Zea mays transposon Helitron HelA-1c, complete se... 96 2e-16
9gb|DQ186636.1| Zea mays transposon Helitron HelA1b, complete seq... 96 2e-16
10gb|DQ186635.1| Zea mays transposon Helitron HelA1a, complete seq... 96 2e-16
11gb|DQ188098.1| Zea mays transposon HelA-2b, partial sequence 96 2e-16
12gb|AF391808.2| Zea mays chromosome 9S bz genomic region strain McC 96 2e-16
13gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bi... 96 2e-16
14gb|DQ003206.1| Zea mays transposon Helitron, complete sequence 96 2e-16
15dbj|AK098886.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
16dbj|AK060767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
18dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic D... 60 1e-05
19dbj|AK072765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
20ref|NM_120865.3| Arabidopsis thaliana beta-glucuronidase AT5G078... 48 0.038
21gb|BT015800.1| Arabidopsis thaliana At5g07830 mRNA, complete cds 48 0.038
22gb|BT015345.1| Arabidopsis thaliana At5g07830 gene, complete cds 48 0.038
23gb|AY049238.1| Arabidopsis thaliana clone RAFL08-10-H13(R13205),... 48 0.038
24emb|BX832624.1|CNS09YPR Arabidopsis thaliana Full-length cDNA Co... 48 0.038
25dbj|AB040072.1| Scutellaria baicalensis SGUS mRNA for beta-glucu... 46 0.15
26gb|BT012681.1| Lycopersicon esculentum clone 113528F, mRNA sequence 44 0.59
27gb|BT013740.1| Lycopersicon esculentum clone 132601F, mRNA sequence 42 2.3
28gb|AC124478.5| Mus musculus BAC clone RP24-105I8 from chromosome... 42 2.3
29gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, comple... 42 2.3
30gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell... 42 2.3
31gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell ... 42 2.3
32gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, re... 42 2.3
33gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, re... 42 2.3
34gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29... 42 2.3
35gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 ... 42 2.3
36ref|NM_180907.1| Arabidopsis thaliana beta-glucuronidase AT5G612... 40 9.2
37ref|NM_125518.3| Arabidopsis thaliana beta-glucuronidase AT5G612... 40 9.2
38gb|AC166341.3| Mus musculus BAC clone RP23-430C21 from chromosom... 40 9.2
39ref|XM_483612.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.2
40gb|AC147238.3| Mus musculus BAC clone RP23-377L7 from chromosome... 40 9.2
41gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, c... 40 9.2
42gb|AC123035.2| Mus musculus BAC clone RP24-497E22 from 10, compl... 40 9.2
43gb|AC153511.4| Mus musculus 10 BAC RP23-102N12 (Roswell Park Can... 40 9.2
44emb|AJ316141.1|NLU316141 Nilaparvata lugens mRNA for cathepsin B... 40 9.2
45emb|AL645909.11| Mouse DNA sequence from clone RP23-216O18 on ch... 40 9.2
46gb|AC013549.9| Homo sapiens chromosome 11, clone RP11-47J17, com... 40 9.2
47gb|AY099736.1| Arabidopsis thaliana putative protein (At5g61250)... 40 9.2
48dbj|AK144458.1| Mus musculus adult male accessory axillary lymph... 40 9.2
49dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
50emb|BX831499.1|CNS0A24Q Arabidopsis thaliana Full-length cDNA Co... 40 9.2
51gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.2
52gb|BT002603.1| Arabidopsis thaliana putative protein (At5g61250)... 40 9.2
53gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosom... 40 9.2
54dbj|AK174841.1| Ciona intestinalis cDNA, clone:cinc007p12, full ... 40 9.2
55dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
56ref|XM_312170.2| Anopheles gambiae str. PEST ENSANGP00000022201 ... 40 9.2
57dbj|AK071354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
58dbj|AK059291.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.2
59gb|AC134917.5| Mus musculus BAC clone RP23-64B3 from chromosome ... 40 9.2
60gb|AC158638.15| Mus musculus 10 BAC RP24-117O6 (Roswell Park Can... 40 9.2 
>dbj|AK107538.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H06, full
            insert sequence
          Length = 2050

 Score =  278 bits (140), Expect = 2e-71
 Identities = 238/271 (87%)
 Strand = Plus / Minus

                                                                        
Query: 402  cgccctcgctggtcacatagatgtggtttgtgttgttgccactgaggttgatcaggagta 461
            |||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1523 cgccttcgctcgtcacgtagatatggtttgtgttgttgccactgaggttgatcaggagta 1464

                                                                        
Query: 462  gggtgatcccttccgaatcttttgtgcagtgtgtataagcacggatcttgtttgtgccgt 521
            | ||||||||    |||||| ||| ||| ||||  ||||| ||||||||||| |||||||
Sbjct: 1463 gagtgatcccacgtgaatctcttgcgcaatgtgcgtaagcgcggatcttgttggtgccgt 1404

                                                                        
Query: 522  tgaatgtcgtggagagaaccttggttcccatgaggcgatgccacagcagagcactgtagt 581
            ||||||| |  |||||||||||||||||||||||||| | ||| || | |||||||||||
Sbjct: 1403 tgaatgttgccgagagaaccttggttcccatgaggcggttccatagtaaagcactgtagt 1344

                                                                        
Query: 582  aatcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaagg 641
            ||||||| ||||||||||||||||||||||||||||  |||||||||||||||| |||||
Sbjct: 1343 aatcagggtttggttcaaacgttgttgtgttgagcagaccatagttccctccaatcaagg 1284

                                           
Query: 642  tttgcctgcagtaactctttgtgtcgtactt 672
            | || ||||||||  |||||||||| |||||
Sbjct: 1283 tctgtctgcagtaggtctttgtgtcatactt 1253



 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/204 (87%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                        
Query: 113  atctacctacaggcaggagcattaaagtctgg-aatatgagcaaacacaatggagtaagg 171
            ||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||
Sbjct: 1812 atctacctacaggcaggagcatagaa-tctgggaatatgagcaaacacaatggagtaagg 1754

                                                                        
Query: 172  gcccagggttatgggctgtgttccgtcaacctgcaccggctccagcttggggatggctcc 231
              |||  ||||||||||||||||| || |||||||| ||||||||||| |||||  ||||
Sbjct: 1753 agccactgttatgggctgtgttccctccacctgcacaggctccagcttagggatctctcc 1694

                                                                        
Query: 232  attggcaccagtggctagcacattgccattgagcagcatgtgttggctctgcaggttccc 291
            ||||||| |||  || | |||||||||||| |||||||  || |||||||||||| ||||
Sbjct: 1693 attggcatcaggtgccaacacattgccattcagcagcacatgctggctctgcaggctccc 1634

                                    
Query: 292  atctttggcggtgaggtggtactc 315
            |||||||| |||||| ||||||||
Sbjct: 1633 atctttgggggtgagatggtactc 1610



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/60 (90%), Gaps = 4/60 (6%)
 Strand = Plus / Minus

                                                                        
Query: 1    tttcagccttacagcttacttcattt----gcaggtgagcatgctttgcttctcacccac 56
            |||||||||||||| |||||||||||    ||||||||||||||||||| ||||||||||
Sbjct: 1944 tttcagccttacagtttacttcattttgcagcaggtgagcatgctttgcctctcacccac 1885
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/204 (87%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                            
Query: 113      atctacctacaggcaggagcattaaagtctgg-aatatgagcaaacacaatggagtaagg 171
                ||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||
Sbjct: 34221959 atctacctacaggcaggagcatagaa-tctgggaatatgagcaaacacaatggagtaagg 34221901

                                                                            
Query: 172      gcccagggttatgggctgtgttccgtcaacctgcaccggctccagcttggggatggctcc 231
                  |||  ||||||||||||||||| || |||||||| ||||||||||| |||||  ||||
Sbjct: 34221900 agccactgttatgggctgtgttccctccacctgcacaggctccagcttagggatctctcc 34221841

                                                                            
Query: 232      attggcaccagtggctagcacattgccattgagcagcatgtgttggctctgcaggttccc 291
                ||||||| |||  || | |||||||||||| |||||||  || |||||||||||| ||||
Sbjct: 34221840 attggcatcaggtgccaacacattgccattcagcagcacatgctggctctgcaggctccc 34221781

                                        
Query: 292      atctttggcggtgaggtggtactc 315
                |||||||| |||||| ||||||||
Sbjct: 34221780 atctttgggggtgagatggtactc 34221757



 Score =  125 bits (63), Expect = 2e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                            
Query: 575      ctgtagtaatcaggatttggttcaaacgttgttgtgttgagcangccatagttccctcca 634
                |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 34220988 ctgtagtaatcagggtttggttcaaacgttgttgtgttgagcagaccatagttccctcca 34220929

                                                      
Query: 635      accaaggtttgcctgcagtaactctttgtgtcgtactt 672
                | |||||| || ||||||||  |||||||||| |||||
Sbjct: 34220928 atcaaggtctgtctgcagtaggtctttgtgtcatactt 34220891



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                            
Query: 402      cgccctcgctggtcacatagatgtggtttgtgttgttgccactgaggttgatcaggagta 461
                |||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 34221670 cgccttcgctcgtcacgtagatatggtttgtgttgttgccactgaggttgatcaggagta 34221611

                          
Query: 462      gggtgatccc 471
                | ||||||||
Sbjct: 34221610 gagtgatccc 34221601



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                            
Query: 476      gaatcttttgtgcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggag 535
                |||||| ||| ||| ||||  ||||| ||||||||||| |||||||||||||| |  |||
Sbjct: 34221484 gaatctcttgcgcaatgtgcgtaagcgcggatcttgttggtgccgttgaatgttgccgag 34221425

                                       
Query: 536      agaaccttggttcccatgaggcg 558
                |||||||||||||||||||||||
Sbjct: 34221424 agaaccttggttcccatgaggcg 34221402



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/60 (90%), Gaps = 4/60 (6%)
 Strand = Plus / Minus

                                                                            
Query: 1        tttcagccttacagcttacttcattt----gcaggtgagcatgctttgcttctcacccac 56
                |||||||||||||| |||||||||||    ||||||||||||||||||| ||||||||||
Sbjct: 34222091 tttcagccttacagtttacttcattttgcagcaggtgagcatgctttgcctctcacccac 34222032
to top
>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0032L17
          Length = 165808

 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/204 (87%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                          
Query: 113    atctacctacaggcaggagcattaaagtctgg-aatatgagcaaacacaatggagtaagg 171
              ||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||
Sbjct: 149473 atctacctacaggcaggagcatagaa-tctgggaatatgagcaaacacaatggagtaagg 149415

                                                                          
Query: 172    gcccagggttatgggctgtgttccgtcaacctgcaccggctccagcttggggatggctcc 231
                |||  ||||||||||||||||| || |||||||| ||||||||||| |||||  ||||
Sbjct: 149414 agccactgttatgggctgtgttccctccacctgcacaggctccagcttagggatctctcc 149355

                                                                          
Query: 232    attggcaccagtggctagcacattgccattgagcagcatgtgttggctctgcaggttccc 291
              ||||||| |||  || | |||||||||||| |||||||  || |||||||||||| ||||
Sbjct: 149354 attggcatcaggtgccaacacattgccattcagcagcacatgctggctctgcaggctccc 149295

                                      
Query: 292    atctttggcggtgaggtggtactc 315
              |||||||| |||||| ||||||||
Sbjct: 149294 atctttgggggtgagatggtactc 149271



 Score =  125 bits (63), Expect = 2e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                          
Query: 575    ctgtagtaatcaggatttggttcaaacgttgttgtgttgagcangccatagttccctcca 634
              |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 148502 ctgtagtaatcagggtttggttcaaacgttgttgtgttgagcagaccatagttccctcca 148443

                                                    
Query: 635    accaaggtttgcctgcagtaactctttgtgtcgtactt 672
              | |||||| || ||||||||  |||||||||| |||||
Sbjct: 148442 atcaaggtctgtctgcagtaggtctttgtgtcatactt 148405



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                          
Query: 402    cgccctcgctggtcacatagatgtggtttgtgttgttgccactgaggttgatcaggagta 461
              |||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 149184 cgccttcgctcgtcacgtagatatggtttgtgttgttgccactgaggttgatcaggagta 149125

                        
Query: 462    gggtgatccc 471
              | ||||||||
Sbjct: 149124 gagtgatccc 149115



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                          
Query: 476    gaatcttttgtgcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggag 535
              |||||| ||| ||| ||||  ||||| ||||||||||| |||||||||||||| |  |||
Sbjct: 148998 gaatctcttgcgcaatgtgcgtaagcgcggatcttgttggtgccgttgaatgttgccgag 148939

                                     
Query: 536    agaaccttggttcccatgaggcg 558
              |||||||||||||||||||||||
Sbjct: 148938 agaaccttggttcccatgaggcg 148916



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/60 (90%), Gaps = 4/60 (6%)
 Strand = Plus / Minus

                                                                          
Query: 1      tttcagccttacagcttacttcattt----gcaggtgagcatgctttgcttctcacccac 56
              |||||||||||||| |||||||||||    ||||||||||||||||||| ||||||||||
Sbjct: 149605 tttcagccttacagtttacttcattttgcagcaggtgagcatgctttgcctctcacccac 149546
to top
>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0689B12
          Length = 154745

 Score =  182 bits (92), Expect = 1e-42
 Identities = 178/204 (87%), Gaps = 2/204 (0%)
 Strand = Plus / Minus

                                                                         
Query: 113   atctacctacaggcaggagcattaaagtctgg-aatatgagcaaacacaatggagtaagg 171
             ||||||||||||||||||||||  || ||||| |||||||||||||||||||||||||||
Sbjct: 57232 atctacctacaggcaggagcatagaa-tctgggaatatgagcaaacacaatggagtaagg 57174

                                                                         
Query: 172   gcccagggttatgggctgtgttccgtcaacctgcaccggctccagcttggggatggctcc 231
               |||  ||||||||||||||||| || |||||||| ||||||||||| |||||  ||||
Sbjct: 57173 agccactgttatgggctgtgttccctccacctgcacaggctccagcttagggatctctcc 57114

                                                                         
Query: 232   attggcaccagtggctagcacattgccattgagcagcatgtgttggctctgcaggttccc 291
             ||||||| |||  || | |||||||||||| |||||||  || |||||||||||| ||||
Sbjct: 57113 attggcatcaggtgccaacacattgccattcagcagcacatgctggctctgcaggctccc 57054

                                     
Query: 292   atctttggcggtgaggtggtactc 315
             |||||||| |||||| ||||||||
Sbjct: 57053 atctttgggggtgagatggtactc 57030



 Score =  125 bits (63), Expect = 2e-25
 Identities = 89/98 (90%)
 Strand = Plus / Minus

                                                                         
Query: 575   ctgtagtaatcaggatttggttcaaacgttgttgtgttgagcangccatagttccctcca 634
             |||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 56261 ctgtagtaatcagggtttggttcaaacgttgttgtgttgagcagaccatagttccctcca 56202

                                                   
Query: 635   accaaggtttgcctgcagtaactctttgtgtcgtactt 672
             | |||||| || ||||||||  |||||||||| |||||
Sbjct: 56201 atcaaggtctgtctgcagtaggtctttgtgtcatactt 56164



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 65/70 (92%)
 Strand = Plus / Minus

                                                                         
Query: 402   cgccctcgctggtcacatagatgtggtttgtgttgttgccactgaggttgatcaggagta 461
             |||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 56943 cgccttcgctcgtcacgtagatatggtttgtgttgttgccactgaggttgatcaggagta 56884

                       
Query: 462   gggtgatccc 471
             | ||||||||
Sbjct: 56883 gagtgatccc 56874



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 73/83 (87%)
 Strand = Plus / Minus

                                                                         
Query: 476   gaatcttttgtgcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggag 535
             |||||| ||| ||| ||||  ||||| ||||||||||| |||||||||||||| |  |||
Sbjct: 56757 gaatctcttgcgcaatgtgcgtaagcgcggatcttgttggtgccgttgaatgttgccgag 56698

                                    
Query: 536   agaaccttggttcccatgaggcg 558
             |||||||||||||||||||||||
Sbjct: 56697 agaaccttggttcccatgaggcg 56675



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 54/60 (90%), Gaps = 4/60 (6%)
 Strand = Plus / Minus

                                                                         
Query: 1     tttcagccttacagcttacttcattt----gcaggtgagcatgctttgcttctcacccac 56
             |||||||||||||| |||||||||||    ||||||||||||||||||| ||||||||||
Sbjct: 57364 tttcagccttacagtttacttcattttgcagcaggtgagcatgctttgcctctcacccac 57305
to top
>ref|XM_476314.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1635

 Score =  139 bits (70), Expect = 1e-29
 Identities = 201/245 (82%)
 Strand = Plus / Minus

                                                                        
Query: 429  ttgtgttgttgccactgaggttgatcaggagtagggtgatcccttccgaatcttttgtgc 488
            ||||| |||||||||||||||||||||| ||||| || || |||   |||||||||| ||
Sbjct: 1339 ttgtggtgttgccactgaggttgatcagcagtagtgttattcctggagaatcttttgcgc 1280

                                                                        
Query: 489  agtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggagagaaccttggttc 548
            | || | |||||  || ||| |||| ||||| |||||||| |  || ||||| |||||||
Sbjct: 1279 aatgcgcataagtgcgaatcatgttggtgccattgaatgttgcagatagaactttggttc 1220

                                                                        
Query: 549  ccatgaggcgatgccacagcagagcactgtagtaatcaggatttggttcaaacgttgttg 608
            |||||||||||||||| || ||||| ||||| || |||||||||||||  || |||  | 
Sbjct: 1219 ccatgaggcgatgccatagtagagcgctgtaatagtcaggatttggttggaatgtttctt 1160

                                                                        
Query: 609  tgttgagcangccatagttccctccaaccaaggtttgcctgcagtaactctttgtgtcgt 668
            |||| |||| ||||||||| || |||| |||  |||| |||||||||||||| ||||| |
Sbjct: 1159 tgtttagcaggccatagttgccaccaatcaaactttgtctgcagtaactcttcgtgtcat 1100

                 
Query: 669  acttt 673
            |||||
Sbjct: 1099 acttt 1095



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 149  tgagcaaacacaatggagtaagg 171
            |||||||||||||||||||||||
Sbjct: 1601 tgagcaaacacaatggagtaagg 1579
to top
>gb|DQ000639.1| Zea mays clone 3530_1_147_1C02 hypro2 pseudogene mRNA, complete
           sequence
          Length = 1586

 Score =  139 bits (70), Expect = 1e-29
 Identities = 194/236 (82%), Gaps = 11/236 (4%)
 Strand = Plus / Minus

                                                                       
Query: 446 aggttgatcaggagtagggtgatcccttccgaatcttttgtgcagtgtgtataagcacgg 505
           |||||||||||||| || | |||| ||||||| | ||| | ||||||||  || ||||||
Sbjct: 993 aggttgatcaggagcagagcgatctcttccgagtttttcgcgcagtgtgcgtaggcacgg 934

                                                                       
Query: 506 atcttgtttgtgccgttgaatg-------tcgtggagagaaccttggttccc----atga 554
           ||||||||||||||||||||||        ||| ||||| |||||||| |||    ||||
Sbjct: 933 atcttgtttgtgccgttgaatgccgtcgagcgtcgagaggaccttggtgcccatgcatga 874

                                                                       
Query: 555 ggcgatgccacagcagagcactgtagtaatcaggatttggttcaaacgttgttgtgttga 614
           |||| ||||||| || |||||| || || ||||| ||||||||||| ||  |||||||||
Sbjct: 873 ggcggtgccacaacaaagcactataatagtcagggtttggttcaaatgtacttgtgttga 814

                                                                   
Query: 615 gcangccatagttccctccaaccaaggtttgcctgcagtaactctttgtgtcgtac 670
           ||| ||||||||| |||||||||||||| || |||||||| |||||||||| ||||
Sbjct: 813 gcaggccatagttgcctccaaccaaggtctgtctgcagtagctctttgtgttgtac 758



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                        
Query: 149  tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
            ||||||||||| || ||||||||||||| |||||||||||| || || || |||||||| 
Sbjct: 1302 tgagcaaacacgatagagtaagggcccacggttatgggctgcgtcccctccacctgcacg 1243

                                                                        
Query: 209  ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
            ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 1242 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 1183

                                                                       
Query: 269  atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
            |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 1182 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 1124
to top
>dbj|AK065263.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002K06, full
            insert sequence
          Length = 1940

 Score =  139 bits (70), Expect = 1e-29
 Identities = 201/245 (82%)
 Strand = Plus / Minus

                                                                        
Query: 429  ttgtgttgttgccactgaggttgatcaggagtagggtgatcccttccgaatcttttgtgc 488
            ||||| |||||||||||||||||||||| ||||| || || |||   |||||||||| ||
Sbjct: 1411 ttgtggtgttgccactgaggttgatcagcagtagtgttattcctggagaatcttttgcgc 1352

                                                                        
Query: 489  agtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggagagaaccttggttc 548
            | || | |||||  || ||| |||| ||||| |||||||| |  || ||||| |||||||
Sbjct: 1351 aatgcgcataagtgcgaatcatgttggtgccattgaatgttgcagatagaactttggttc 1292

                                                                        
Query: 549  ccatgaggcgatgccacagcagagcactgtagtaatcaggatttggttcaaacgttgttg 608
            |||||||||||||||| || ||||| ||||| || |||||||||||||  || |||  | 
Sbjct: 1291 ccatgaggcgatgccatagtagagcgctgtaatagtcaggatttggttggaatgtttctt 1232

                                                                        
Query: 609  tgttgagcangccatagttccctccaaccaaggtttgcctgcagtaactctttgtgtcgt 668
            |||| |||| ||||||||| || |||| |||  |||| |||||||||||||| ||||| |
Sbjct: 1231 tgtttagcaggccatagttgccaccaatcaaactttgtctgcagtaactcttcgtgtcat 1172

                 
Query: 669  acttt 673
            |||||
Sbjct: 1171 acttt 1167



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 149  tgagcaaacacaatggagtaagg 171
            |||||||||||||||||||||||
Sbjct: 1673 tgagcaaacacaatggagtaagg 1651
to top
>gb|DQ186637.1| Zea mays transposon Helitron HelA-1c, complete sequence
          Length = 5189

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 584  tcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaaggtt 643
            ||||| ||||||||||| ||  |||||||||||| ||||||||| |||||||||||||| 
Sbjct: 2077 tcagggtttggttcaaatgtacttgtgttgagcaggccatagttgcctccaaccaaggtc 2018

                                       
Query: 644  tgcctgcagtaactctttgtgtcgtac 670
            || |||||||| |||||||||| ||||
Sbjct: 2017 tgtctgcagtagctctttgtgttgtac 1991



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                        
Query: 487  gcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggagagaaccttggt 546
            ||||||||  || |||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 2262 gcagtgtgcgtaggcacggatcttgtttgtgccgttgaatgccgtcgagaggaccttggt 2203

                  
Query: 547  tcccat 552
             |||||
Sbjct: 2202 gcccat 2197



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 143/179 (79%)
 Strand = Plus / Minus

                                                                        
Query: 149  tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
            ||||||||||| || ||||||||||||| ||||||||| || || || || |||||||| 
Sbjct: 2694 tgagcaaacacgatagagtaagggcccacggttatgggttgcgtcccctccacctgcacg 2635

                                                                        
Query: 209  ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
            ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 2634 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 2575

                                                                       
Query: 269  atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
            |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 2574 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 2516
to top
>gb|DQ186636.1| Zea mays transposon Helitron HelA1b, complete sequence
          Length = 5189

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 584  tcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaaggtt 643
            ||||| ||||||||||| ||  |||||||||||| ||||||||| |||||||||||||| 
Sbjct: 2077 tcagggtttggttcaaatgtacttgtgttgagcaggccatagttgcctccaaccaaggtc 2018

                                       
Query: 644  tgcctgcagtaactctttgtgtcgtac 670
            || |||||||| |||||||||| ||||
Sbjct: 2017 tgtctgcagtagctctttgtgttgtac 1991



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                        
Query: 487  gcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggagagaaccttggt 546
            ||||||||  || |||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 2262 gcagtgtgcgtaggcacggatcttgtttgtgccgttgaatgccgtcgagaggaccttggt 2203

                  
Query: 547  tcccat 552
             |||||
Sbjct: 2202 gcccat 2197



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 143/179 (79%)
 Strand = Plus / Minus

                                                                        
Query: 149  tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
            ||||||||||| || ||||||||||||| ||||||||| || || || || |||||||| 
Sbjct: 2694 tgagcaaacacgatagagtaagggcccacggttatgggttgcgtcccctccacctgcacg 2635

                                                                        
Query: 209  ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
            ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 2634 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 2575

                                                                       
Query: 269  atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
            |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 2574 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 2516
to top
>gb|DQ186635.1| Zea mays transposon Helitron HelA1a, complete sequence
          Length = 5858

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 584  tcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaaggtt 643
            ||||| ||||||||||| ||  |||||||||||| ||||||||| |||||||||||||| 
Sbjct: 2744 tcagggtttggttcaaatgtacttgtgttgagcaggccatagttgcctccaaccaaggtc 2685

                                       
Query: 644  tgcctgcagtaactctttgtgtcgtac 670
            || |||||||| |||||||||| ||||
Sbjct: 2684 tgtctgcagtagctctttgtgttgtac 2658



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                        
Query: 149  tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
            ||||||||||| || ||||||||||||| |||||||||||| || || || |||||||| 
Sbjct: 3361 tgagcaaacacgatagagtaagggcccacggttatgggctgcgtcccctccacctgcacg 3302

                                                                        
Query: 209  ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
            ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 3301 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 3242

                                                                       
Query: 269  atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
            |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 3241 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 3183



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                        
Query: 487  gcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggagagaaccttggt 546
            ||||||||  || |||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 2929 gcagtgtgcgtaggcacggatcttgtttgtgccgttgaatgccgtcgagaggaccttggt 2870

                  
Query: 547  tcccat 552
             |||||
Sbjct: 2869 gcccat 2864
to top
>gb|DQ188098.1| Zea mays transposon HelA-2b, partial sequence
          Length = 6000

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                        
Query: 584  tcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaaggtt 643
            ||||| ||||||||||| ||  |||||||||||| ||||||||| |||||||||||||| 
Sbjct: 2747 tcagggtttggttcaaatgtacttgtgttgagcaggccatagttgcctccaaccaaggtc 2688

                                       
Query: 644  tgcctgcagtaactctttgtgtcgtac 670
            || |||||||| |||||||||| ||||
Sbjct: 2687 tgtctgcagtagctctttgtgttgtac 2661



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Minus

                                                                        
Query: 149  tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
            ||||||||||| || ||||||||||||| |||||||||||| || || || |||||||| 
Sbjct: 3369 tgagcaaacacgatagagtaagggcccacggttatgggctgcgtcccctccacctgcacg 3310

                                                                        
Query: 209  ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
            ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 3309 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 3250

                                                                       
Query: 269  atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
            |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 3249 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 3191



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Minus

                                                     
Query: 487  gcagtgtgtataagcacggatcttgtttgtgccgttgaatg 527
            ||||||||  || ||||||||||||||||||||||||||||
Sbjct: 2937 gcagtgtgcgtaggcacggatcttgtttgtgccgttgaatg 2897
to top
>gb|AF391808.2| Zea mays chromosome 9S bz genomic region strain McC
          Length = 226001

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                          
Query: 584    tcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaaggtt 643
              ||||| ||||||||||| ||  |||||||||||| ||||||||| |||||||||||||| 
Sbjct: 136846 tcagggtttggttcaaatgtacttgtgttgagcaggccatagttgcctccaaccaaggtc 136905

                                         
Query: 644    tgcctgcagtaactctttgtgtcgtac 670
              || |||||||| |||||||||| ||||
Sbjct: 136906 tgtctgcagtagctctttgtgttgtac 136932



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Plus

                                                                          
Query: 149    tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
              ||||||||||| || ||||||||||||| |||||||||||| || || || |||||||| 
Sbjct: 136229 tgagcaaacacgatagagtaagggcccacggttatgggctgcgtcccctccacctgcacg 136288

                                                                          
Query: 209    ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
              ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 136289 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 136348

                                                                         
Query: 269    atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
              |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 136349 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 136407



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                          
Query: 487    gcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggagagaaccttggt 546
              ||||||||  || |||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 136661 gcagtgtgcgtaggcacggatcttgtttgtgccgttgaatgccgtcgagaggaccttggt 136720

                    
Query: 547    tcccat 552
               |||||
Sbjct: 136721 gcccat 136726
to top
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete
            sequence
          Length = 50000

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                        
Query: 584  tcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaaggtt 643
            ||||| ||||||||||| ||  |||||||||||| ||||||||| |||||||||||||| 
Sbjct: 8968 tcagggtttggttcaaatgtacttgtgttgagcaggccatagttgcctccaaccaaggtc 9027

                                       
Query: 644  tgcctgcagtaactctttgtgtcgtac 670
            || |||||||| |||||||||| ||||
Sbjct: 9028 tgtctgcagtagctctttgtgttgtac 9054



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Plus

                                                                        
Query: 149  tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
            ||||||||||| || ||||||||||||| |||||||||||| || || || |||||||| 
Sbjct: 8346 tgagcaaacacgatagagtaagggcccacggttatgggctgcgtcccctccacctgcacg 8405

                                                                        
Query: 209  ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
            ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 8406 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 8465

                                                                       
Query: 269  atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
            |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 8466 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 8524



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 487  gcagtgtgtataagcacggatcttgtttgtgccgttgaatg 527
            ||||||||  || ||||||||||||||||||||||||||||
Sbjct: 8778 gcagtgtgcgtaggcacggatcttgtttgtgccgttgaatg 8818
to top
>gb|DQ003206.1| Zea mays transposon Helitron, complete sequence
          Length = 7594

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 77/87 (88%)
 Strand = Plus / Plus

                                                                        
Query: 584  tcaggatttggttcaaacgttgttgtgttgagcangccatagttccctccaaccaaggtt 643
            ||||| ||||||||||| ||  |||||||||||| ||||||||| |||||||||||||| 
Sbjct: 3762 tcagggtttggttcaaatgtacttgtgttgagcaggccatagttgcctccaaccaaggtc 3821

                                       
Query: 644  tgcctgcagtaactctttgtgtcgtac 670
            || |||||||| |||||||||| ||||
Sbjct: 3822 tgtctgcagtagctctttgtgttgtac 3848



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 144/179 (80%)
 Strand = Plus / Plus

                                                                        
Query: 149  tgagcaaacacaatggagtaagggcccagggttatgggctgtgttccgtcaacctgcacc 208
            ||||||||||| || ||||||||||||| |||||||||||| || || || |||||||| 
Sbjct: 3140 tgagcaaacacgatagagtaagggcccacggttatgggctgcgtcccctccacctgcacg 3199

                                                                        
Query: 209  ggctccagcttggggatggctccattggcaccagtggctagcacattgccattgagcagc 268
            ||||||||||  |||||  | || | |||  | || || || || ||||| || ||||||
Sbjct: 3200 ggctccagctccgggatctccccgtcggcgtcggttgccaggacgttgccgttcagcagc 3259

                                                                       
Query: 269  atgtgttggctctgcaggttcccatctttggcggtgaggtggtactcctgccttgtgag 327
            |  || ||||||||||||||||| || ||||  || || ||||||||||| || |||||
Sbjct: 3260 agctgctggctctgcaggttcccgtccttgggagttagatggtactcctgtctcgtgag 3318



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                     
Query: 487  gcagtgtgtataagcacggatcttgtttgtgccgttgaatg 527
            ||||||||  || ||||||||||||||||||||||||||||
Sbjct: 3572 gcagtgtgcgtaggcacggatcttgtttgtgccgttgaatg 3612
to top
>dbj|AK098886.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J13, full
            insert sequence
          Length = 2101

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 103/126 (81%)
 Strand = Plus / Minus

                                                                        
Query: 548  cccatgaggcgatgccacagcagagcactgtagtaatcaggatttggttcaaacgttgtt 607
            |||||||| |||||||||||||  ||||||||||||||||| |||||  |||| |||   
Sbjct: 1406 cccatgagccgatgccacagcaaggcactgtagtaatcagggtttggaacaaaagtttcg 1347

                                                                        
Query: 608  gtgttgagcangccatagttccctccaaccaaggtttgcctgcagtaactctttgtgtcg 667
            || |  || | ||||||||| ||||||| ||| || || |||||||||  ||||||||| 
Sbjct: 1346 gtatcaagaaggccatagttgcctccaatcaaagtctgtctgcagtaaacctttgtgtca 1287

                  
Query: 668  tacttt 673
            ||||||
Sbjct: 1286 tacttt 1281
to top
>dbj|AK060767.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A11, full
            insert sequence
          Length = 2105

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 103/126 (81%)
 Strand = Plus / Minus

                                                                        
Query: 548  cccatgaggcgatgccacagcagagcactgtagtaatcaggatttggttcaaacgttgtt 607
            |||||||| |||||||||||||  ||||||||||||||||| |||||  |||| |||   
Sbjct: 1407 cccatgagccgatgccacagcaaggcactgtagtaatcagggtttggaacaaaagtttcg 1348

                                                                        
Query: 608  gtgttgagcangccatagttccctccaaccaaggtttgcctgcagtaactctttgtgtcg 667
            || |  || | ||||||||| ||||||| ||| || || |||||||||  ||||||||| 
Sbjct: 1347 gtatcaagaaggccatagttgcctccaatcaaagtctgtctgcagtaaacctttgtgtca 1288

                  
Query: 668  tacttt 673
            ||||||
Sbjct: 1287 tacttt 1282
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                           
Query: 476     gaatcttttgtgcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggag 535
               |||||||||| ||| || | |||||  || ||| |||| ||||| |||||||| |  || 
Sbjct: 3936248 gaatcttttgcgcaatgcgcataagtgcgaatcatgttggtgccattgaatgttgcagat 3936307

                                                     
Query: 536     agaaccttggttcccatgaggcgatgccacagcagagc 573
               ||||| ||||||||||||||||||||||| || |||||
Sbjct: 3936308 agaactttggttcccatgaggcgatgccatagtagagc 3936345



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 81/99 (81%)
 Strand = Plus / Plus

                                                                           
Query: 575     ctgtagtaatcaggatttggttcaaacgttgttgtgttgagcangccatagttccctcca 634
               ||||| || |||||||||||||  || |||  | |||| |||| ||||||||| || |||
Sbjct: 3936600 ctgtaatagtcaggatttggttggaatgtttctttgtttagcaggccatagttgccacca 3936659

                                                      
Query: 635     accaaggtttgcctgcagtaactctttgtgtcgtacttt 673
               | |||  |||| |||||||||||||| ||||| ||||||
Sbjct: 3936660 atcaaactttgtctgcagtaactcttcgtgtcatacttt 3936698



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 429     ttgtgttgttgccactgaggttgatcaggagtag 462
               ||||| |||||||||||||||||||||| |||||
Sbjct: 3936100 ttgtggtgttgccactgaggttgatcagcagtag 3936133



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 149     tgagcaaacacaatggagtaagg 171
               |||||||||||||||||||||||
Sbjct: 3935838 tgagcaaacacaatggagtaagg 3935860
to top
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0035I03
          Length = 153749

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 476   gaatcttttgtgcagtgtgtataagcacggatcttgtttgtgccgttgaatgtcgtggag 535
             |||||||||| ||| || | |||||  || ||| |||| ||||| |||||||| |  || 
Sbjct: 42124 gaatcttttgcgcaatgcgcataagtgcgaatcatgttggtgccattgaatgttgcagat 42183

                                                   
Query: 536   agaaccttggttcccatgaggcgatgccacagcagagc 573
             ||||| ||||||||||||||||||||||| || |||||
Sbjct: 42184 agaactttggttcccatgaggcgatgccatagtagagc 42221



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 81/99 (81%)
 Strand = Plus / Plus

                                                                         
Query: 575   ctgtagtaatcaggatttggttcaaacgttgttgtgttgagcangccatagttccctcca 634
             ||||| || |||||||||||||  || |||  | |||| |||| ||||||||| || |||
Sbjct: 42476 ctgtaatagtcaggatttggttggaatgtttctttgtttagcaggccatagttgccacca 42535

                                                    
Query: 635   accaaggtttgcctgcagtaactctttgtgtcgtacttt 673
             | |||  |||| |||||||||||||| ||||| ||||||
Sbjct: 42536 atcaaactttgtctgcagtaactcttcgtgtcatacttt 42574



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 429   ttgtgttgttgccactgaggttgatcaggagtag 462
             ||||| |||||||||||||||||||||| |||||
Sbjct: 41976 ttgtggtgttgccactgaggttgatcagcagtag 42009



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 149   tgagcaaacacaatggagtaagg 171
             |||||||||||||||||||||||
Sbjct: 41714 tgagcaaacacaatggagtaagg 41736
to top
>dbj|AK072765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139K11, full
            insert sequence
          Length = 2385

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 548  cccatgaggcgatgccacagcagagcactgtagtaatcaggatttgg 594
            ||||| || |||||||| || |||||||| |||||||||||||||||
Sbjct: 1607 cccataagccgatgccatagtagagcactatagtaatcaggatttgg 1561
to top
>ref|NM_120865.3| Arabidopsis thaliana beta-glucuronidase AT5G07830 mRNA, complete cds
          Length = 2477

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| ||||| || || |||||||||||||||||  ||||||||
Sbjct: 1366 cgatgccaaagcagcgcgctatagtaatcaggatttggaacaaacgtt 1319
to top
>gb|BT015800.1| Arabidopsis thaliana At5g07830 mRNA, complete cds
          Length = 1632

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| ||||| || || |||||||||||||||||  ||||||||
Sbjct: 1166 cgatgccaaagcagcgcgctatagtaatcaggatttggaacaaacgtt 1119
to top
>gb|BT015345.1| Arabidopsis thaliana At5g07830 gene, complete cds
          Length = 1841

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| ||||| || || |||||||||||||||||  ||||||||
Sbjct: 1346 cgatgccaaagcagcgcgctatagtaatcaggatttggaacaaacgtt 1299
to top
>gb|AY049238.1| Arabidopsis thaliana clone RAFL08-10-H13(R13205), mRNA sequence
          Length = 1913

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| ||||| || || |||||||||||||||||  ||||||||
Sbjct: 1379 cgatgccaaagcagcgcgctatagtaatcaggatttggaacaaacgtt 1332
to top
>emb|BX832624.1|CNS09YPR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH85ZC10 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1890

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| ||||| || || |||||||||||||||||  ||||||||
Sbjct: 1369 cgatgccaaagcagcgcgctatagtaatcaggatttggaacaaacgtt 1322
to top
>dbj|AB040072.1| Scutellaria baicalensis SGUS mRNA for beta-glucuronidase precursor,
            complete cds
          Length = 1584

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 560  tgccacagcagagcactgtagtaatcaggatttgg 594
            ||||| || ||||||||||||||||| ||||||||
Sbjct: 1190 tgccaaagaagagcactgtagtaatctggatttgg 1156
to top
>gb|BT012681.1| Lycopersicon esculentum clone 113528F, mRNA sequence
          Length = 1696

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                        
Query: 569  agagcactgtagtaatcaggatttggttcaaacgttgttgtgttgagcangccatagttc 628
            ||||||| ||| |||||||||||||| | ||| ||||| || ||||| |  || ||||| 
Sbjct: 1160 agagcaccgtaataatcaggatttggatgaaaggttgtggtattgaggagaccgtagttg 1101

                             
Query: 629  cctccaaccaaggtttg 645
            || |||||||| |||||
Sbjct: 1100 ccaccaaccaatgtttg 1084
to top
>gb|BT013740.1| Lycopersicon esculentum clone 132601F, mRNA sequence
          Length = 2024

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 546  ttcccatgaggcgatgccacagcagagcactgtagtaatcaggatttgg 594
            ||||||| || |||||||| || || ||||| || ||||||||||||||
Sbjct: 1409 ttcccatcagccgatgccaaagaagtgcactataataatcaggatttgg 1361
to top
>gb|AC124478.5| Mus musculus BAC clone RP24-105I8 from chromosome 8, complete sequence
          Length = 159317

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 216   gcttggggatggctccattgg 236
             |||||||||||||||||||||
Sbjct: 77541 gcttggggatggctccattgg 77521
to top
>gb|AC122873.5| Mus musculus BAC clone RP23-110K10 from 8, complete sequence
          Length = 199474

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 216    gcttggggatggctccattgg 236
              |||||||||||||||||||||
Sbjct: 183082 gcttggggatggctccattgg 183062
to top
>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer
           Institute Drosophila BAC Library) complete sequence
          Length = 185790

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 95  cacaaaaaccaatcaacaatc 115
           |||||||||||||||||||||
Sbjct: 52  cacaaaaaccaatcaacaatc 72
to top
>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187555

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 95    cacaaaaaccaatcaacaatc 115
             |||||||||||||||||||||
Sbjct: 54657 cacaaaaaccaatcaacaatc 54677
to top
>gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, region 15C-15D, BAC clone
             BACR10J22, complete sequence
          Length = 157457

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 329   ccagctgtttcgccgagcttc 349
             |||||||||||||||||||||
Sbjct: 28597 ccagctgtttcgccgagcttc 28577
to top
>gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone
              BACR35G15, complete sequence
          Length = 168615

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 329    ccagctgtttcgccgagcttc 349
              |||||||||||||||||||||
Sbjct: 159629 ccagctgtttcgccgagcttc 159649
to top
>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete
              sequence
          Length = 281917

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     cacaaaaaccaatcaacaatc 115
              |||||||||||||||||||||
Sbjct: 167410 cacaaaaaccaatcaacaatc 167390
to top
>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete
             sequence
          Length = 302073

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 329   ccagctgtttcgccgagcttc 349
             |||||||||||||||||||||
Sbjct: 11876 ccagctgtttcgccgagcttc 11896
to top
>ref|NM_180907.1| Arabidopsis thaliana beta-glucuronidase AT5G61250 transcript variant
            AT5G61250.1 mRNA, complete cds
          Length = 2011

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| || || || ||||||||||| ||||||||  ||||||||
Sbjct: 1235 cgatgccaaagaagcgcgctgtagtaatctggatttggaacaaacgtt 1188
to top
>ref|NM_125518.3| Arabidopsis thaliana beta-glucuronidase AT5G61250 transcript variant
            AT5G61250.2 mRNA, complete cds
          Length = 2055

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| || || || ||||||||||| ||||||||  ||||||||
Sbjct: 1279 cgatgccaaagaagcgcgctgtagtaatctggatttggaacaaacgtt 1232
to top
>gb|AC166341.3| Mus musculus BAC clone RP23-430C21 from chromosome 12, complete
             sequence
          Length = 196418

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 355   ggaccttgtgtgctcctttgcgcc 378
             |||||||| |||||||||||||||
Sbjct: 12791 ggaccttgggtgctcctttgcgcc 12768
to top
>ref|XM_483612.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4511

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  cttggggatggctccattgg 236
            ||||||||||||||||||||
Sbjct: 3857 cttggggatggctccattgg 3838
to top
>gb|AC147238.3| Mus musculus BAC clone RP23-377L7 from chromosome 10, complete sequence
          Length = 176876

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    ggataatttcccacaaaaaccaat 107
             |||||| |||||||||||||||||
Sbjct: 72362 ggataaattcccacaaaaaccaat 72339
to top
>gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, complete sequence
          Length = 205123

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 562   ccacagcagagcactgtagt 581
             ||||||||||||||||||||
Sbjct: 73063 ccacagcagagcactgtagt 73082
to top
>gb|AC123035.2| Mus musculus BAC clone RP24-497E22 from 10, complete sequence
          Length = 166009

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    ggataatttcccacaaaaaccaat 107
             |||||| |||||||||||||||||
Sbjct: 52962 ggataaattcccacaaaaaccaat 52939
to top
>gb|AC153511.4| Mus musculus 10 BAC RP23-102N12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 196715

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   gaatcttttgtgcagtgtgt 495
             ||||||||||||||||||||
Sbjct: 83301 gaatcttttgtgcagtgtgt 83320
to top
>emb|AJ316141.1|NLU316141 Nilaparvata lugens mRNA for cathepsin B-like protease
          Length = 1145

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  tgcttctcacccaccggcac 62
           ||||||||||||||||||||
Sbjct: 819 tgcttctcacccaccggcac 800
to top
>emb|AL645909.11| Mouse DNA sequence from clone RP23-216O18 on chromosome 11 Contains the
              Lcp2 gene for lymphocyte cytosolic protein 2,  the 5' end
              of a novel gene and a novel gene, complete sequence
          Length = 186087

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 211    ctccagcttggggatggctccatt 234
              ||||||| ||||||||||||||||
Sbjct: 154555 ctccagcatggggatggctccatt 154532
to top
>gb|AC013549.9| Homo sapiens chromosome 11, clone RP11-47J17, complete sequence
          Length = 163180

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   tgagcagcatgtgttggctc 280
             ||||||||||||||||||||
Sbjct: 85691 tgagcagcatgtgttggctc 85672
to top
>gb|AY099736.1| Arabidopsis thaliana putative protein (At5g61250) mRNA, complete cds
          Length = 1841

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| || || || ||||||||||| ||||||||  ||||||||
Sbjct: 1235 cgatgccaaagaagcgcgctgtagtaatctggatttggaacaaacgtt 1188
to top
>dbj|AK144458.1| Mus musculus adult male accessory axillary lymph node cDNA, RIKEN
           full-length enriched library, clone:G630072K05
           product:hypothetical TPR repeat containing protein, full
           insert sequence
          Length = 1648

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 562 ccacagcagagcactgtagt 581
           ||||||||||||||||||||
Sbjct: 521 ccacagcagagcactgtagt 540
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 217      cttggggatggctccattgg 236
                ||||||||||||||||||||
Sbjct: 27271150 cttggggatggctccattgg 27271169
to top
>emb|BX831499.1|CNS0A24Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH11ZB06 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1813

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| || || || ||||||||||| ||||||||  ||||||||
Sbjct: 1242 cgatgccaaagaagcgcgctgtagtaatctggatttggaacaaacgtt 1195
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 374     gcgccgtggggatgcgcgcc 393
               ||||||||||||||||||||
Sbjct: 2462946 gcgccgtggggatgcgcgcc 2462965
to top
>gb|BT002603.1| Arabidopsis thaliana putative protein (At5g61250) mRNA, complete cds
          Length = 1734

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 557  cgatgccacagcagagcactgtagtaatcaggatttggttcaaacgtt 604
            |||||||| || || || ||||||||||| ||||||||  ||||||||
Sbjct: 1154 cgatgccaaagaagcgcgctgtagtaatctggatttggaacaaacgtt 1107
to top
>gb|AC132572.3| Mus musculus BAC clone RP24-409B13 from chromosome 12, complete
             sequence
          Length = 131385

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 562   ccacagcagagcactgtagt 581
             ||||||||||||||||||||
Sbjct: 98041 ccacagcagagcactgtagt 98022
to top
>dbj|AK174841.1| Ciona intestinalis cDNA, clone:cinc007p12, full insert sequence
          Length = 1281

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ccacaaaaaccaatcaacaa 113
           ||||||||||||||||||||
Sbjct: 365 ccacaaaaaccaatcaacaa 384
to top
>dbj|AP004632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0623F08
          Length = 154540

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   cttggggatggctccattgg 236
             ||||||||||||||||||||
Sbjct: 94353 cttggggatggctccattgg 94372
to top
>ref|XM_312170.2| Anopheles gambiae str. PEST ENSANGP00000022201
           (ENSANGG00000019712), mRNA
          Length = 675

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 283 caggttcccatctttggcgg 302
           ||||||||||||||||||||
Sbjct: 217 caggttcccatctttggcgg 236
to top
>dbj|AK071354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095B09, full
            insert sequence
          Length = 4512

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  cttggggatggctccattgg 236
            ||||||||||||||||||||
Sbjct: 3858 cttggggatggctccattgg 3839
to top
>dbj|AK059291.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-E03, full
            insert sequence
          Length = 1704

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  cttggggatggctccattgg 236
            ||||||||||||||||||||
Sbjct: 1083 cttggggatggctccattgg 1064
to top
>gb|AC134917.5| Mus musculus BAC clone RP23-64B3 from chromosome 12, complete sequence
          Length = 225046

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 355   ggaccttgtgtgctcctttgcgcc 378
             |||||||| |||||||||||||||
Sbjct: 51489 ggaccttgggtgctcctttgcgcc 51512
to top
>gb|AC158638.15| Mus musculus 10 BAC RP24-117O6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 185145

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    gaatcttttgtgcagtgtgt 495
              ||||||||||||||||||||
Sbjct: 170517 gaatcttttgtgcagtgtgt 170536


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,903,370
Number of Sequences: 3902068
Number of extensions: 4903370
Number of successful extensions: 86217
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85941
Number of HSP's gapped (non-prelim): 263
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top