ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7m21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104648.1| Zea mays PCO124263 mRNA sequence 266 8e-68
2ref|XM_506620.1| PREDICTED Oryza sativa (japonica cultivar-group... 260 5e-66
3ref|XM_479674.1| Oryza sativa (japonica cultivar-group), mRNA 260 5e-66
4dbj|AK063887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 5e-66
5dbj|AK061550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 260 5e-66
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
7dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
8dbj|AK072948.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
9emb|X81123.3|ECPR388 Escherichia coli plasmid IncW R388 mating p... 50 0.009
10tpd|BR000038.1| TPA: TPA_inf: Escherichia coli plasmid R388 DNA,... 50 0.009
11gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosom... 44 0.53
12emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 ... 44 0.53
13gb|AC123903.2| Homo sapiens chromosome 3 clone RP11-182A24, comp... 44 0.53
14gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 44 0.53
15gb|U64854.3| Caenorhabditis elegans cosmid K11C4, complete sequence 42 2.1
16emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 42 2.1
17ref|NM_072352.2| Caenorhabditis elegans UNCoordinated family mem... 42 2.1
18dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, ... 42 2.1
19dbj|D45899.1| Caenorhabditis elegans DNA for ryanodine receptor,... 42 2.1
20gb|AC168055.3| Mus musculus BAC clone RP24-360I1 from chromosome... 40 8.3
21ref|NM_020561.1| Mus musculus sphingomyelin phosphodiesterase, a... 40 8.3
22gb|AC107676.10| Mus musculus chromosome 7, clone RP24-492K24, co... 40 8.3
23gb|AY380828.1| Muntiacus reevesi micrurus clone FM-satII (2-2-16... 40 8.3
24gb|U07603.2|PTU07603 Paramecium tetraurelia 51B type surface pro... 40 8.3
25gb|AC162164.7| Mus musculus chromosome 7, clone RP23-308C18, com... 40 8.3
26gb|AC138452.10| Medicago truncatula clone mth2-17p11, complete s... 40 8.3
27emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on ch... 40 8.3
28emb|AL078588.9|HSDJ784K2 Human DNA sequence from clone RP4-784K2... 40 8.3
29gb|AF506213.1| Danio rerio ADP-ribosylation factor-like 2 protei... 40 8.3
30gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, comp... 40 8.3
31dbj|AK151683.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 8.3
32gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, compl... 40 8.3
33dbj|AK152282.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 40 8.3
34gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) ge... 40 8.3
35dbj|AK205531.1| Mus musculus cDNA, clone:Y2G0102A05, strand:plus... 40 8.3
36dbj|AK198108.1| Mus musculus cDNA, clone:Y1G0127C13, strand:plus... 40 8.3
37gb|AC006127.1|AC006127 Homo sapiens chromosome 19, cosmid F24827... 40 8.3
38ref|NM_173272.1| Danio rerio ADP-ribosylation factor-like 13b (a... 40 8.3
39dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.3
40dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:... 40 8.3
41emb|Y08135.1|MMASML3A M.musculus mRNA for ASM-like phosphodieste... 40 8.3 
>gb|AY104648.1| Zea mays PCO124263 mRNA sequence
          Length = 1187

 Score =  266 bits (134), Expect = 8e-68
 Identities = 260/301 (86%), Gaps = 1/301 (0%)
 Strand = Plus / Minus

                                                                       
Query: 295 cgagcgcggtgcttgagctcggcccttttccaccttaccatcagcatgcagagcgtcaca 354
           |||||||| ||| ||||||| |||||||||||||||||||| ||| ||||||||||||| 
Sbjct: 570 cgagcgcgatgcctgagctctgcccttttccaccttaccattagcgtgcagagcgtcacg 511

                                                                       
Query: 355 agggtgttcaccagaataagtatcgtaatcaggagcaggggaccagaccacatgaccgag 414
           || ||||||||||||||||| ||||| |||||||| || || |||||||| |||||||| 
Sbjct: 510 agagtgttcaccagaataaggatcgttatcaggaggagagggccagaccagatgaccgaa 451

                                                                       
Query: 415 atgaagaggccttggggatcaaagtaattctggcttgagaagctcttncagttttgtcct 474
           ||||| ||||| ||||||||||| || || ||| | ||||||||||| ||||||||  | 
Sbjct: 450 atgaaaaggccctggggatcaaaatagttttgggtagagaagctcttccagttttgcgcc 391

                                                                       
Query: 475 aagaatgtgttttagtttctccgcaaggaatacaccagaaaatgtgaaggctgacaaaat 534
           | ||| ||  |||| | |||| ||||||||||||||||||||||| |  |||||||| ||
Sbjct: 390 aggaacgt-atttaatctctcagcaaggaatacaccagaaaatgttagagctgacaagat 332

                                                                       
Query: 535 aagttggaaattgatgttcctcctggagatgatggttaccagtagcagaatggcatggaa 594
            || ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 331 gagctggaaattgatattcctcctcgagatgatggtaaccagtagcagaatggcatggaa 272

            
Query: 595 a 595
           |
Sbjct: 271 a 271
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>ref|XM_506620.1| PREDICTED Oryza sativa (japonica cultivar-group), P0015C07.37-2
           mRNA
          Length = 999

 Score =  260 bits (131), Expect = 5e-66
 Identities = 290/342 (84%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 269 atcattcctgcttgctacgggcctcacgagcgcggtgcttgagctcggcccttttccacc 328
           |||| ||||||||| ||||  |||||||||| |||||| | ||||| ||||||||||| |
Sbjct: 614 atcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatc 555

                                                                       
Query: 329 ttaccatcagcatgcagagcgtcacaagggtgttcaccagaataagtatcgtaatcagga 388
           |||||||||||| |||||| || ||||| |||||||||| |||||| ||||| ||||  |
Sbjct: 554 ttaccatcagcaggcagagtgtgacaagagtgttcaccaaaataaggatcgttatcaaaa 495

                                                                       
Query: 389 gcaggggaccagaccacatgaccgagatgaagaggccttggggatcaaagtaattctggc 448
           | ||||| |||||||| |  || || ||||| || |||||||||||||| ||||||||||
Sbjct: 494 ggaggggcccagaccagacaactgaaatgaacagaccttggggatcaaaataattctggc 435

                                                                       
Query: 449 ttgagaagctcttncagttttgtcctaagaatgtgttttagtttctccgcaaggaataca 508
           ||||||||||||| |||| ||| |||||||||||  |||| | |||| || || ||||||
Sbjct: 434 ttgagaagctcttccagtgttgccctaagaatgt-atttattctctcagcgagaaataca 376

                                                                       
Query: 509 ccagaaaatgtgaaggctgacaaaataagttggaaattgatgttcctcctggagatgatg 568
           ||||||||||| || |||||||| ||||||||||| ||||  || ||||| |||||||| 
Sbjct: 375 ccagaaaatgttaaagctgacaagataagttggaagttgacatttctccttgagatgatt 316

                                                     
Query: 569 gttaccagtagcagaatggcatggaaacttatcatgccgatc 610
           |||||||| |||||||||||||| ||| ||| ||||| ||||
Sbjct: 315 gttaccagcagcagaatggcatgaaaaattaacatgctgatc 274
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>ref|XM_479674.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 978

 Score =  260 bits (131), Expect = 5e-66
 Identities = 290/342 (84%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 269 atcattcctgcttgctacgggcctcacgagcgcggtgcttgagctcggcccttttccacc 328
           |||| ||||||||| ||||  |||||||||| |||||| | ||||| ||||||||||| |
Sbjct: 590 atcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatc 531

                                                                       
Query: 329 ttaccatcagcatgcagagcgtcacaagggtgttcaccagaataagtatcgtaatcagga 388
           |||||||||||| |||||| || ||||| |||||||||| |||||| ||||| ||||  |
Sbjct: 530 ttaccatcagcaggcagagtgtgacaagagtgttcaccaaaataaggatcgttatcaaaa 471

                                                                       
Query: 389 gcaggggaccagaccacatgaccgagatgaagaggccttggggatcaaagtaattctggc 448
           | ||||| |||||||| |  || || ||||| || |||||||||||||| ||||||||||
Sbjct: 470 ggaggggcccagaccagacaactgaaatgaacagaccttggggatcaaaataattctggc 411

                                                                       
Query: 449 ttgagaagctcttncagttttgtcctaagaatgtgttttagtttctccgcaaggaataca 508
           ||||||||||||| |||| ||| |||||||||||  |||| | |||| || || ||||||
Sbjct: 410 ttgagaagctcttccagtgttgccctaagaatgt-atttattctctcagcgagaaataca 352

                                                                       
Query: 509 ccagaaaatgtgaaggctgacaaaataagttggaaattgatgttcctcctggagatgatg 568
           ||||||||||| || |||||||| ||||||||||| ||||  || ||||| |||||||| 
Sbjct: 351 ccagaaaatgttaaagctgacaagataagttggaagttgacatttctccttgagatgatt 292

                                                     
Query: 569 gttaccagtagcagaatggcatggaaacttatcatgccgatc 610
           |||||||| |||||||||||||| ||| ||| ||||| ||||
Sbjct: 291 gttaccagcagcagaatggcatgaaaaattaacatgctgatc 250
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>dbj|AK063887.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-G02, full
           insert sequence
          Length = 999

 Score =  260 bits (131), Expect = 5e-66
 Identities = 290/342 (84%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 269 atcattcctgcttgctacgggcctcacgagcgcggtgcttgagctcggcccttttccacc 328
           |||| ||||||||| ||||  |||||||||| |||||| | ||||| ||||||||||| |
Sbjct: 614 atcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatc 555

                                                                       
Query: 329 ttaccatcagcatgcagagcgtcacaagggtgttcaccagaataagtatcgtaatcagga 388
           |||||||||||| |||||| || ||||| |||||||||| |||||| ||||| ||||  |
Sbjct: 554 ttaccatcagcaggcagagtgtgacaagagtgttcaccaaaataaggatcgttatcaaaa 495

                                                                       
Query: 389 gcaggggaccagaccacatgaccgagatgaagaggccttggggatcaaagtaattctggc 448
           | ||||| |||||||| |  || || ||||| || |||||||||||||| ||||||||||
Sbjct: 494 ggaggggcccagaccagacaactgaaatgaacagaccttggggatcaaaataattctggc 435

                                                                       
Query: 449 ttgagaagctcttncagttttgtcctaagaatgtgttttagtttctccgcaaggaataca 508
           ||||||||||||| |||| ||| |||||||||||  |||| | |||| || || ||||||
Sbjct: 434 ttgagaagctcttccagtgttgccctaagaatgt-atttattctctcagcgagaaataca 376

                                                                       
Query: 509 ccagaaaatgtgaaggctgacaaaataagttggaaattgatgttcctcctggagatgatg 568
           ||||||||||| || |||||||| ||||||||||| ||||  || ||||| |||||||| 
Sbjct: 375 ccagaaaatgttaaagctgacaagataagttggaagttgacatttctccttgagatgatt 316

                                                     
Query: 569 gttaccagtagcagaatggcatggaaacttatcatgccgatc 610
           |||||||| |||||||||||||| ||| ||| ||||| ||||
Sbjct: 315 gttaccagcagcagaatggcatgaaaaattaacatgctgatc 274
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>dbj|AK061550.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A11, full
           insert sequence
          Length = 978

 Score =  260 bits (131), Expect = 5e-66
 Identities = 290/342 (84%), Gaps = 1/342 (0%)
 Strand = Plus / Minus

                                                                       
Query: 269 atcattcctgcttgctacgggcctcacgagcgcggtgcttgagctcggcccttttccacc 328
           |||| ||||||||| ||||  |||||||||| |||||| | ||||| ||||||||||| |
Sbjct: 590 atcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatc 531

                                                                       
Query: 329 ttaccatcagcatgcagagcgtcacaagggtgttcaccagaataagtatcgtaatcagga 388
           |||||||||||| |||||| || ||||| |||||||||| |||||| ||||| ||||  |
Sbjct: 530 ttaccatcagcaggcagagtgtgacaagagtgttcaccaaaataaggatcgttatcaaaa 471

                                                                       
Query: 389 gcaggggaccagaccacatgaccgagatgaagaggccttggggatcaaagtaattctggc 448
           | ||||| |||||||| |  || || ||||| || |||||||||||||| ||||||||||
Sbjct: 470 ggaggggcccagaccagacaactgaaatgaacagaccttggggatcaaaataattctggc 411

                                                                       
Query: 449 ttgagaagctcttncagttttgtcctaagaatgtgttttagtttctccgcaaggaataca 508
           ||||||||||||| |||| ||| |||||||||||  |||| | |||| || || ||||||
Sbjct: 410 ttgagaagctcttccagtgttgccctaagaatgt-atttattctctcagcgagaaataca 352

                                                                       
Query: 509 ccagaaaatgtgaaggctgacaaaataagttggaaattgatgttcctcctggagatgatg 568
           ||||||||||| || |||||||| ||||||||||| ||||  || ||||| |||||||| 
Sbjct: 351 ccagaaaatgttaaagctgacaagataagttggaagttgacatttctccttgagatgatt 292

                                                     
Query: 569 gttaccagtagcagaatggcatggaaacttatcatgccgatc 610
           |||||||| |||||||||||||| ||| ||| ||||| ||||
Sbjct: 291 gttaccagcagcagaatggcatgaaaaattaacatgctgatc 250
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 127/152 (83%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                          
Query: 364    accagaataagtatcgtaatcaggagcaggggaccagaccacatgaccgagatgaagagg 423
              |||| |||||| ||||| ||||  || ||||| |||||||| |  || || ||||| || 
Sbjct: 216704 accaaaataaggatcgttatcaaaaggaggggcccagaccagacaactgaaatgaacaga 216763

                                                                          
Query: 424    ccttggggatcaaagtaattctggcttgagaagctcttncagttttgtcctaagaatgtg 483
              |||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| 
Sbjct: 216764 ccttggggatcaaaataattctggcttgagaagctcttccagtgttgccctaagaatgt- 216822

                                              
Query: 484    ttttagtttctccgcaaggaatacaccagaaa 515
               |||| | |||| || || |||||||||||||
Sbjct: 216823 atttattctctcagcgagaaatacaccagaaa 216854



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                          
Query: 269    atcattcctgcttgctacgggcctcacgagcgcggtgcttgagctcggcccttttccacc 328
              |||| ||||||||| ||||  |||||||||| |||||| | ||||| ||||||||||| |
Sbjct: 216525 atcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatc 216584

                                                    
Query: 329    ttaccatcagcatgcagagcgtcacaagggtgttcacc 366
              |||||||||||| |||||| || ||||| |||||||||
Sbjct: 216585 ttaccatcagcaggcagagtgtgacaagagtgttcacc 216622



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                          
Query: 524    gctgacaaaataagttggaaattgatgttcctcctggagatgatggttaccagtagcaga 583
              |||||||| ||||||||||| ||||  || ||||| |||||||| |||||||| ||||||
Sbjct: 217497 gctgacaagataagttggaagttgacatttctccttgagatgattgttaccagcagcaga 217556

                                         
Query: 584    atggcatggaaacttatcatgccgatc 610
              |||||||| ||| ||| ||||| ||||
Sbjct: 217557 atggcatgaaaaattaacatgctgatc 217583
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>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0015C07
          Length = 149079

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 127/152 (83%), Gaps = 1/152 (0%)
 Strand = Plus / Plus

                                                                          
Query: 364    accagaataagtatcgtaatcaggagcaggggaccagaccacatgaccgagatgaagagg 423
              |||| |||||| ||||| ||||  || ||||| |||||||| |  || || ||||| || 
Sbjct: 132039 accaaaataaggatcgttatcaaaaggaggggcccagaccagacaactgaaatgaacaga 132098

                                                                          
Query: 424    ccttggggatcaaagtaattctggcttgagaagctcttncagttttgtcctaagaatgtg 483
              |||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| 
Sbjct: 132099 ccttggggatcaaaataattctggcttgagaagctcttccagtgttgccctaagaatgt- 132157

                                              
Query: 484    ttttagtttctccgcaaggaatacaccagaaa 515
               |||| | |||| || || |||||||||||||
Sbjct: 132158 atttattctctcagcgagaaatacaccagaaa 132189



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                          
Query: 269    atcattcctgcttgctacgggcctcacgagcgcggtgcttgagctcggcccttttccacc 328
              |||| ||||||||| ||||  |||||||||| |||||| | ||||| ||||||||||| |
Sbjct: 131860 atcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatc 131919

                                                    
Query: 329    ttaccatcagcatgcagagcgtcacaagggtgttcacc 366
              |||||||||||| |||||| || ||||| |||||||||
Sbjct: 131920 ttaccatcagcaggcagagtgtgacaagagtgttcacc 131957



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                          
Query: 524    gctgacaaaataagttggaaattgatgttcctcctggagatgatggttaccagtagcaga 583
              |||||||| ||||||||||| ||||  || ||||| |||||||| |||||||| ||||||
Sbjct: 132832 gctgacaagataagttggaagttgacatttctccttgagatgattgttaccagcagcaga 132891

                                         
Query: 584    atggcatggaaacttatcatgccgatc 610
              |||||||| ||| ||| ||||| ||||
Sbjct: 132892 atggcatgaaaaattaacatgctgatc 132918
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>dbj|AK072948.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143E24, full
            insert sequence
          Length = 2679

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 127/152 (83%), Gaps = 1/152 (0%)
 Strand = Plus / Minus

                                                                        
Query: 364  accagaataagtatcgtaatcaggagcaggggaccagaccacatgaccgagatgaagagg 423
            |||| |||||| ||||| ||||  || ||||| |||||||| |  || || ||||| || 
Sbjct: 2144 accaaaataaggatcgttatcaaaaggaggggcccagaccagacaactgaaatgaacaga 2085

                                                                        
Query: 424  ccttggggatcaaagtaattctggcttgagaagctcttncagttttgtcctaagaatgtg 483
            |||||||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| 
Sbjct: 2084 ccttggggatcaaaataattctggcttgagaagctcttccagtgttgccctaagaatgt- 2026

                                            
Query: 484  ttttagtttctccgcaaggaatacaccagaaa 515
             |||| | |||| || || |||||||||||||
Sbjct: 2025 atttattctctcagcgagaaatacaccagaaa 1994



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 269  atcattcctgcttgctacgggcctcacgagcgcggtgcttgagctcggcccttttccacc 328
            |||| ||||||||| ||||  |||||||||| |||||| | ||||| ||||||||||| |
Sbjct: 2323 atcaatcctgcttgttacgaacctcacgagcacggtgcctaagctccgcccttttccatc 2264

                                                  
Query: 329  ttaccatcagcatgcagagcgtcacaagggtgttcacc 366
            |||||||||||| |||||| || ||||| |||||||||
Sbjct: 2263 ttaccatcagcaggcagagtgtgacaagagtgttcacc 2226



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                        
Query: 524  gctgacaaaataagttggaaattgatgttcctcctggagatgatggttaccagtagcaga 583
            |||||||| ||||||||||| ||||  || ||||| |||||||| |||||||| ||||||
Sbjct: 1351 gctgacaagataagttggaagttgacatttctccttgagatgattgttaccagcagcaga 1292

                                       
Query: 584  atggcatggaaacttatcatgccgatc 610
            |||||||| ||| ||| ||||| ||||
Sbjct: 1291 atggcatgaaaaattaacatgctgatc 1265
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>emb|X81123.3|ECPR388 Escherichia coli plasmid IncW R388 mating pair formation region
          Length = 11453

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 264  gcatcatcattcctgcttgctacgggcct 292
            ||||||||||||||||| |||||||||||
Sbjct: 4717 gcatcatcattcctgctggctacgggcct 4689
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>tpd|BR000038.1| TPA: TPA_inf: Escherichia coli plasmid R388 DNA, complete sequence
          Length = 33913

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                         
Query: 264  gcatcatcattcctgcttgctacgggcct 292
            ||||||||||||||||| |||||||||||
Sbjct: 6569 gcatcatcattcctgctggctacgggcct 6597
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>gb|AC129310.6| Mus musculus BAC clone RP24-348D18 from chromosome 8, complete sequence
          Length = 130946

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 582   gaatggcatggaaacttatcat 603
             ||||||||||||||||||||||
Sbjct: 37220 gaatggcatggaaacttatcat 37199
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>emb|AL034376.10|HS529N6 Human DNA sequence from clone RP4-529N6 on chromosome 6p24.1-25.3
             Contains a novel gene, complete sequence
          Length = 131819

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 95    atcagctaatgcatgtgtaaaa 116
             ||||||||||||||||||||||
Sbjct: 69217 atcagctaatgcatgtgtaaaa 69238
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>gb|AC123903.2| Homo sapiens chromosome 3 clone RP11-182A24, complete sequence
          Length = 162351

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 384    caggagcaggggaccagaccac 405
              ||||||||||||||||||||||
Sbjct: 143768 caggagcaggggaccagaccac 143747
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>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 582   gaatggcatggaaacttatcat 603
             ||||||||||||||||||||||
Sbjct: 47104 gaatggcatggaaacttatcat 47125
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>gb|U64854.3| Caenorhabditis elegans cosmid K11C4, complete sequence
          Length = 43184

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 535   aagttggaaattgatgttcct 555
             |||||||||||||||||||||
Sbjct: 31531 aagttggaaattgatgttcct 31551
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 523     ggctgacaaaataagttggaaattgatgt 551
               ||||||||||||| ||||||||| |||||
Sbjct: 1863043 ggctgacaaaatatgttggaaatggatgt 1863071
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>ref|NM_072352.2| Caenorhabditis elegans UNCoordinated family member (unc-68) (unc-68)
            mRNA, complete cds
          Length = 15652

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 535  aagttggaaattgatgttcct 555
            |||||||||||||||||||||
Sbjct: 8918 aagttggaaattgatgttcct 8898
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>dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, map 22, complete
              sequences
          Length = 213585

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 508    accagaaaatgtgaaggctga 528
              |||||||||||||||||||||
Sbjct: 202584 accagaaaatgtgaaggctga 202564
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>dbj|D45899.1| Caenorhabditis elegans DNA for ryanodine receptor, complete cds
          Length = 34256

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 535   aagttggaaattgatgttcct 555
             |||||||||||||||||||||
Sbjct: 21062 aagttggaaattgatgttcct 21042
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>gb|AC168055.3| Mus musculus BAC clone RP24-360I1 from chromosome 10, complete sequence
          Length = 206775

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    aaggctgacaaaataagttg 540
              ||||||||||||||||||||
Sbjct: 186336 aaggctgacaaaataagttg 186317
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>ref|NM_020561.1| Mus musculus sphingomyelin phosphodiesterase, acid-like 3A
           (Smpdl3a), mRNA
          Length = 1758

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 aaggctgacaaaataagttg 540
           ||||||||||||||||||||
Sbjct: 358 aaggctgacaaaataagttg 339
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>gb|AC107676.10| Mus musculus chromosome 7, clone RP24-492K24, complete sequence
          Length = 158478

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   gacaaaataagttggaaatt 546
             ||||||||||||||||||||
Sbjct: 93479 gacaaaataagttggaaatt 93460
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>gb|AY380828.1| Muntiacus reevesi micrurus clone FM-satII (2-2-16) centromeric
           satellite II DNA sequence
          Length = 1143

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 418 aagaggccttggggatcaaa 437
           ||||||||||||||||||||
Sbjct: 517 aagaggccttggggatcaaa 498
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>gb|U07603.2|PTU07603 Paramecium tetraurelia 51B type surface protein gene, complete cds;
           micronuclear
          Length = 8607

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 530 aaaataagttggaaattgat 549
           ||||||||||||||||||||
Sbjct: 167 aaaataagttggaaattgat 148
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>gb|AC162164.7| Mus musculus chromosome 7, clone RP23-308C18, complete sequence
          Length = 187253

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 527   gacaaaataagttggaaatt 546
             ||||||||||||||||||||
Sbjct: 30565 gacaaaataagttggaaatt 30584
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>gb|AC138452.10| Medicago truncatula clone mth2-17p11, complete sequence
          Length = 127710

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   atgcatgtgtaaaaccgtgt 122
             ||||||||||||||||||||
Sbjct: 51993 atgcatgtgtaaaaccgtgt 52012
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>emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on chromosome 13 Contains the
             SOX21 gene for SRY (sex determining region Y)-box 21, a
             bromodomain containing 7 (BP75, NAG4, CELTIX1) (BRD7)
             pseudogene, a ribosomal protein L21 (RPL21) pseudogene and
             2 CpG islands, complete sequence
          Length = 180538

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 475   aagaatgtgttttagtttct 494
             ||||||||||||||||||||
Sbjct: 12953 aagaatgtgttttagtttct 12934
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>emb|AL078588.9|HSDJ784K2 Human DNA sequence from clone RP4-784K2 on chromosome 20 Contains an
             STS and GSSs, complete sequence
          Length = 62421

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 477   gaatgtgttttagtttctcc 496
             ||||||||||||||||||||
Sbjct: 58964 gaatgtgttttagtttctcc 58945
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>gb|AF506213.1| Danio rerio ADP-ribosylation factor-like 2 protein-like protein mRNA,
            complete cds
          Length = 2808

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 381  aatcaggagcaggggaccagacca 404
            |||||||||||| |||||||||||
Sbjct: 1494 aatcaggagcagtggaccagacca 1517
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>gb|AC113372.2| Homo sapiens chromosome 5 clone RP11-160H11, complete sequence
          Length = 98328

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tcatcattcctgcttgctac 286
             ||||||||||||||||||||
Sbjct: 90896 tcatcattcctgcttgctac 90915
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>dbj|AK151683.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830033L07 product:sphingomyelin
           phosphodiesterase, acid-like 3A, full insert sequence
          Length = 1667

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 aaggctgacaaaataagttg 540
           ||||||||||||||||||||
Sbjct: 290 aaggctgacaaaataagttg 271
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>gb|AC011384.4| Homo sapiens chromosome 5 clone CTB-143D11, complete sequence
          Length = 104475

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tcatcattcctgcttgctac 286
             ||||||||||||||||||||
Sbjct: 43180 tcatcattcctgcttgctac 43199
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>dbj|AK152282.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830058G20 product:sphingomyelin
           phosphodiesterase, acid-like 3A, full insert sequence
          Length = 1682

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 aaggctgacaaaataagttg 540
           ||||||||||||||||||||
Sbjct: 305 aaggctgacaaaataagttg 286
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>gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) gene, complete cds,
             alternatively spliced
          Length = 102910

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ggcatggcagcatcatcatt 274
             ||||||||||||||||||||
Sbjct: 62340 ggcatggcagcatcatcatt 62359
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>dbj|AK205531.1| Mus musculus cDNA, clone:Y2G0102A05, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000020022, based on BLAT search
          Length = 409

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 aaggctgacaaaataagttg 540
           ||||||||||||||||||||
Sbjct: 150 aaggctgacaaaataagttg 131
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>dbj|AK198108.1| Mus musculus cDNA, clone:Y1G0127C13, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000020022, based on BLAT search
          Length = 380

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 aaggctgacaaaataagttg 540
           ||||||||||||||||||||
Sbjct: 320 aaggctgacaaaataagttg 301
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>gb|AC006127.1|AC006127 Homo sapiens chromosome 19, cosmid F24827, complete sequence
          Length = 36814

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 255  ggcatggcagcatcatcatt 274
            ||||||||||||||||||||
Sbjct: 6690 ggcatggcagcatcatcatt 6709
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>ref|NM_173272.1| Danio rerio ADP-ribosylation factor-like 13b (arl13b), mRNA
          Length = 2808

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 381  aatcaggagcaggggaccagacca 404
            |||||||||||| |||||||||||
Sbjct: 1494 aatcaggagcagtggaccagacca 1517
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>dbj|AP006113.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT45A24, TM0197,
            complete sequence
          Length = 112846

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 463  cagttttgtcctaagaatgt 482
            ||||||||||||||||||||
Sbjct: 3450 cagttttgtcctaagaatgt 3431
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>dbj|AP004946.1| Lotus japonicus genomic DNA, chromosome , clone:LjT34D11, TM0119,
             complete sequence
          Length = 109743

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 463   cagttttgtcctaagaatgt 482
             ||||||||||||||||||||
Sbjct: 59372 cagttttgtcctaagaatgt 59391
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>emb|Y08135.1|MMASML3A M.musculus mRNA for ASM-like phosphodiesterase 3a
          Length = 1758

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 521 aaggctgacaaaataagttg 540
           ||||||||||||||||||||
Sbjct: 358 aaggctgacaaaataagttg 339


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,284,242
Number of Sequences: 3902068
Number of extensions: 5284242
Number of successful extensions: 96407
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96295
Number of HSP's gapped (non-prelim): 108
length of query: 610
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 587
effective length of database: 17,143,297,704
effective search space: 10063115752248
effective search space used: 10063115752248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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