ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7m14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL590704.13| Human DNA sequence from clone RP11-106E7 on chr... 38 2.2
2emb|BX571960.6| Zebrafish DNA sequence from clone DKEY-165I8 in ... 38 2.2
3ref|XM_778198.1| PREDICTED: Strongylocentrotus purpuratus simila... 36 8.8
4dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone... 36 8.8
5dbj|AP004955.1| Lotus japonicus genomic DNA, chromosome 1, clone... 36 8.8

>emb|AL590704.13| Human DNA sequence from clone RP11-106E7 on chromosome 6 Contains a
             novel pseudogene similar to FLJ23678 and part of the UTRN
             gene for utrophin (homologous to dystrophin) (DRP, DRP1,
             DMDL), complete sequence
          Length = 61097

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    ctgatgctgaacatgatat 32
             |||||||||||||||||||
Sbjct: 48540 ctgatgctgaacatgatat 48558



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>emb|BX571960.6| Zebrafish DNA sequence from clone DKEY-165I8 in linkage group 3,
             complete sequence
          Length = 192501

 Score = 38.2 bits (19), Expect = 2.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 14    ctgatgctgaacatgatat 32
             |||||||||||||||||||
Sbjct: 12056 ctgatgctgaacatgatat 12038



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>ref|XM_778198.1| PREDICTED: Strongylocentrotus purpuratus similar to coronin, actin
           binding protein, 2B (LOC578005), mRNA
          Length = 2322

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 19  gctgaacatgatatcacg 36
           ||||||||||||||||||
Sbjct: 537 gctgaacatgatatcacg 520



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>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181,
             complete sequence
          Length = 185320

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    tgatgctgaacatgatat 32
             ||||||||||||||||||
Sbjct: 69066 tgatgctgaacatgatat 69083



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>dbj|AP004955.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT19K21, TM0132,
             complete sequence
          Length = 59303

 Score = 36.2 bits (18), Expect = 8.8
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 15    tgatgctgaacatgatat 32
             ||||||||||||||||||
Sbjct: 48546 tgatgctgaacatgatat 48563


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,663
Number of Sequences: 3902068
Number of extensions: 198663
Number of successful extensions: 9950
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9945
Number of HSP's gapped (non-prelim): 5
length of query: 61
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 40
effective length of database: 17,151,101,840
effective search space: 686044073600
effective search space used: 686044073600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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