ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8b13 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 78.2 bits (191), Expect(2) = 6e-17 Identities = 43/100 (43%), Positives = 65/100 (65%) Frame = -3 Query: 472 SHASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLT 293 S AS+ M D + + F+AL + NYLR+Q+++LTG T+ +D A++ NM+ L+ +G++LL Sbjct: 292 SAASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLK 351 Query: 292 KTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 173 K+VS+ D T EEAL RFAK LS+ +KLR Sbjct: 352 KSVSK-----------DNPETYEEALKRFAKLLSDRKKLR 380 Score = 28.5 bits (62), Expect(2) = 6e-17 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -2 Query: 554 YTAPECAKWGVLRWL 510 YTA E AKWG RW+ Sbjct: 270 YTAEETAKWGTARWM 284
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 76.6 bits (187), Expect(2) = 6e-17 Identities = 42/98 (42%), Positives = 62/98 (63%) Frame = -3 Query: 466 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 287 AS+ M D + + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 286 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 173 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380 Score = 30.0 bits (66), Expect(2) = 6e-17 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = -2 Query: 554 YTAPECAKWGVLRWL 510 YTA E AKWG LRW+ Sbjct: 270 YTAQEAAKWGPLRWM 284
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 76.6 bits (187), Expect(2) = 6e-17 Identities = 42/98 (42%), Positives = 62/98 (63%) Frame = -3 Query: 466 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 287 AS+ M D + + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 286 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 173 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380 Score = 30.0 bits (66), Expect(2) = 6e-17 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = -2 Query: 554 YTAPECAKWGVLRWL 510 YTA E AKWG LRW+ Sbjct: 270 YTAEEAAKWGPLRWM 284
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 75.9 bits (185), Expect(2) = 1e-16 Identities = 42/98 (42%), Positives = 61/98 (62%) Frame = -3 Query: 466 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 287 AS+ M D + + +F+A + NYLR+Q+++LTG T+ +D A++ NME L+ +G+ LL K Sbjct: 285 ASSYMTDYYISTVFQARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKP 344 Query: 286 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 173 VS+ D T EEAL RFAK LS +KLR Sbjct: 345 VSK-----------DSPETYEEALKRFAKLLSNRKKLR 371 Score = 30.0 bits (66), Expect(2) = 1e-16 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = -2 Query: 554 YTAPECAKWGVLRWL 510 YTA E AKWG LRW+ Sbjct: 261 YTAEEAAKWGPLRWM 275
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 74.7 bits (182), Expect(2) = 2e-16 Identities = 41/98 (41%), Positives = 61/98 (62%) Frame = -3 Query: 466 ASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKT 287 AS+ M D + + +F+A + NYLR+Q+++L G T+ +D A++ NME L+ +G+ LL K Sbjct: 294 ASSYMTDYYISTVFQARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKP 353 Query: 286 VSRVNIDNGMYETVDGAGTNEEALVRFAKRLSEERKLR 173 VS+ D T EEAL RFAK LS+ +KLR Sbjct: 354 VSK-----------DSPETYEEALKRFAKLLSDRKKLR 380 Score = 30.0 bits (66), Expect(2) = 2e-16 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = -2 Query: 554 YTAPECAKWGVLRWL 510 YTA E AKWG LRW+ Sbjct: 270 YTAEEAAKWGPLRWM 284
>EDG5_RAT (P47752) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (G-protein coupled receptor H218) (AGR16) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 32.7 bits (73), Expect = 0.75 Identities = 23/58 (39%), Positives = 34/58 (58%) Frame = +3 Query: 186 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 359 +S+ L A++L+ P T+S PL F R+ S F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGPVTLSLTPLQWFAREG---SAF--ITLSASVFSLLAIAIE 129
>CS120_WHEAT (P46525) Cold-shock protein CS120| Length = 391 Score = 30.4 bits (67), Expect = 3.7 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 11/52 (21%) Frame = -2 Query: 392 HPGRLAHGANVLGGYRHQREHGGAYWDR*ESAH-----------QDRIPGKH 270 HPG HGA GG Q+ H G AH +D++PG H Sbjct: 38 HPGTATHGAPATGGAYGQQGHAGTTGTGLHGAHAGEKKGVMENIKDKLPGGH 89
>EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (Lysophospholipid receptor B2) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 30.4 bits (67), Expect = 3.7 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = +3 Query: 186 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTE 359 +S+ L A++L+ T+S P+ F R+ VS F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGHVTLSLTPVQWFARE---VSAF--ITLSASVFSLLAIAIE 129
>HUTH_PSESM (Q87UM1) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 515 Score = 30.0 bits (66), Expect = 4.9 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +2 Query: 287 GLGEQILTDPNKRLHVLFGGDIHRGRLPRERVVLDAQVVLLNAE 418 G+G+ I D + + VL + RG RVV+DA + L+NAE Sbjct: 92 GVGQPISDDLVRLIMVLKVNSLSRGFSGIRRVVIDALIALINAE 135
>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4| (Methionine-requiring protein 4) Length = 672 Score = 30.0 bits (66), Expect = 4.9 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -3 Query: 313 IGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLS--EERKLRQTNLNS 155 I ++L + RVN+ NG Y ++ AG + + + A ++ ++K+R+ N N+ Sbjct: 353 IPTSVLVTLLPRVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407
>Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (EC 3.4.24.-)| Length = 335 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = -3 Query: 424 EALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYE 251 E L+I+ N + DD G + +A +E I G ++LTKTV + ++GMY+ Sbjct: 139 EFLKIDGNKIHTTDDFRMG----LALAKGNPVELEIKRGNDVLTKTVQPILNESGMYQ 192
>THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -3 Query: 409 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 236 EE L+I S+TG+ S ++ K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 235 GTNEEALVR 209 G E LVR Sbjct: 209 GVEESELVR 217
>THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -3 Query: 409 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 236 EE L+I S+TG+ S ++ K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 235 GTNEEALVR 209 G E LVR Sbjct: 209 GVEESELVR 217
>GOSR1_PONPY (Q5RBL6) Golgi SNAP receptor complex member 1| Length = 248 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = -3 Query: 481 DVFSHASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKN 302 D+ S+ S V+ LF E ++LR D L +T S+ +ATKENM + G+ K+ Sbjct: 143 DIESYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKS 198 Query: 301 LLTKTVSRVN 272 + +K + N Sbjct: 199 IHSKMNTLAN 208
>GOSR1_RAT (Q62931) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = -3 Query: 481 DVFSHASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKN 302 D+ S+ S V+ LF E ++LR D L +T S+ +ATKENM + G+ K+ Sbjct: 145 DIESYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKS 200 Query: 301 LLTKTVSRVN 272 + +K + N Sbjct: 201 IHSKMNTLAN 210
>GOSR1_MOUSE (O88630) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = -3 Query: 481 DVFSHASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKN 302 D+ S+ S V+ LF E ++LR D L +T S+ +ATKENM + G+ K+ Sbjct: 145 DIESYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKS 200 Query: 301 LLTKTVSRVN 272 + +K + N Sbjct: 201 IHSKMNTLAN 210
>GOSR1_HUMAN (O95249) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = -3 Query: 481 DVFSHASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKN 302 D+ S+ S V+ LF E ++LR D L +T S+ +ATKENM + G+ K+ Sbjct: 145 DIESYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKS 200 Query: 301 LLTKTVSRVN 272 + +K + N Sbjct: 201 IHSKMNTLAN 210
>GOSR1_CRIGR (O08522) Golgi SNAP receptor complex member 1 (28 kDa Golgi SNARE| protein) (28 kDa cis-Golgi SNARE p28) (GOS-28) Length = 250 Score = 29.6 bits (65), Expect = 6.4 Identities = 23/70 (32%), Positives = 37/70 (52%) Frame = -3 Query: 481 DVFSHASADMVDIHAAVLFEALRIEENYLRIQDDSLTGQTSSVDIATKENMEALIGIGKN 302 D+ S+ S V+ LF E ++LR D L +T S+ +ATKENM + G+ K+ Sbjct: 145 DIESYKSGSGVNNRRTELFLK---EHDHLR-NSDRLIEETISIAMATKENMTSQRGMLKS 200 Query: 301 LLTKTVSRVN 272 + +K + N Sbjct: 201 IHSKMNTLAN 210
>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)| (Guanosine diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3) Length = 445 Score = 29.3 bits (64), Expect = 8.3 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +2 Query: 272 VYPGYGLGEQILTDPNKRLHVLFGGDIHRGRLPRERVVLDAQVVLLNAEG 421 +YP YGLGE L RL ++GG + E +V + +VV + +EG Sbjct: 225 LYPLYGLGE--LPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEG 272
>THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 549 Score = 29.3 bits (64), Expect = 8.3 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = -3 Query: 409 EENYLRIQDDSLTGQT--SSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 236 EE LRI S+TG+ S ++ K ++A+ + + K V V++DN +E G Sbjct: 151 EETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 235 GTNEEALVR 209 G E LVR Sbjct: 209 GVEESELVR 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,425,440 Number of Sequences: 219361 Number of extensions: 1341070 Number of successful extensions: 4206 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4086 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4201 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
