ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags7m07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE011810.1| Xanthomonas axonopodis pv. citri str. 306, section 188 of 469 of the complete genome Length = 10880 Score = 46.1 bits (23), Expect = 0.15 Identities = 29/31 (93%) Strand = Plus / Plus Query: 450 ctgccgcagctgctgctgccgcatccgcatc 480 ||||||||||||| | ||||||||||||||| Sbjct: 8919 ctgccgcagctgcaggtgccgcatccgcatc 8949
>emb|AL158135.5| Human DNA sequence from clone RP1-304H12 on chromosome 6, complete sequence Length = 64854 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Minus Query: 167 atacttcatttgaggaatgaaatgct 192 |||||||||| ||||||||||||||| Sbjct: 46125 atacttcattggaggaatgaaatgct 46100
>emb|BX530015.9| Zebrafish DNA sequence from clone DKEY-262K23 in linkage group 11, complete sequence Length = 101327 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 gtattcacatgaactcaatata 74 |||||||||||||||||||||| Sbjct: 6984 gtattcacatgaactcaatata 6963
>ref|NM_183904.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2478 Score = 42.1 bits (21), Expect = 2.3 Identities = 75/93 (80%) Strand = Plus / Minus Query: 505 atgcttcaggcctgtcagatgctgtatgccagacacacccctcgactcctctgaatggcc 564 ||||||||||| | || ||||| ||| ||||||||||| | ||| | |||||| ||| Sbjct: 2349 atgcttcaggctaggcaaatgctctataccagacacaccatttgacccatctgaaatgcc 2290 Query: 565 ttcttcaaactttagctcaagcacttcaacctt 597 || ||| |||| |||||||| ||||||||||| Sbjct: 2289 tttttcgtacttcagctcaagaacttcaacctt 2257
>ref|XM_534780.2| PREDICTED: Canis familiaris similar to associated molecule with the SH3 domain of STAM (AMSH) like protein (LOC477586), mRNA Length = 1703 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 456 cagctgctgctgccgcatccg 476 ||||||||||||||||||||| Sbjct: 648 cagctgctgctgccgcatccg 628
>gb|AC114998.13| Mus musculus chromosome 8, clone RP23-476P11, complete sequence Length = 222621 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 tgttgaaggaagtgtgttgaa 269 ||||||||||||||||||||| Sbjct: 146953 tgttgaaggaagtgtgttgaa 146933
>gb|U10427.1|SCU10427 Saccharomyces cerevisiae KZ1-1C Syr2p (SYR2) gene, complete cds Length = 2016 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 ttactgccgcagctgctgctgccgc 471 |||||||||| |||||||||||||| Sbjct: 287 ttactgccgctgctgctgctgccgc 311
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.3 Identities = 75/93 (80%) Strand = Plus / Plus Query: 505 atgcttcaggcctgtcagatgctgtatgccagacacacccctcgactcctctgaatggcc 564 ||||||||||| | || ||||| ||| ||||||||||| | ||| | |||||| ||| Sbjct: 13125194 atgcttcaggctaggcaaatgctctataccagacacaccatttgacccatctgaaatgcc 13125253 Query: 565 ttcttcaaactttagctcaagcacttcaacctt 597 || ||| |||| |||||||| ||||||||||| Sbjct: 13125254 tttttcgtacttcagctcaagaacttcaacctt 13125286
>dbj|AP003208.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158F07 Length = 139491 Score = 42.1 bits (21), Expect = 2.3 Identities = 75/93 (80%) Strand = Plus / Plus Query: 505 atgcttcaggcctgtcagatgctgtatgccagacacacccctcgactcctctgaatggcc 564 ||||||||||| | || ||||| ||| ||||||||||| | ||| | |||||| ||| Sbjct: 100915 atgcttcaggctaggcaaatgctctataccagacacaccatttgacccatctgaaatgcc 100974 Query: 565 ttcttcaaactttagctcaagcacttcaacctt 597 || ||| |||| |||||||| ||||||||||| Sbjct: 100975 tttttcgtacttcagctcaagaacttcaacctt 101007
>dbj|AK068195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146B15, full insert sequence Length = 2761 Score = 42.1 bits (21), Expect = 2.3 Identities = 75/93 (80%) Strand = Plus / Minus Query: 505 atgcttcaggcctgtcagatgctgtatgccagacacacccctcgactcctctgaatggcc 564 ||||||||||| | || ||||| ||| ||||||||||| | ||| | |||||| ||| Sbjct: 2506 atgcttcaggctaggcaaatgctctataccagacacaccatttgacccatctgaaatgcc 2447 Query: 565 ttcttcaaactttagctcaagcacttcaacctt 597 || ||| |||| |||||||| ||||||||||| Sbjct: 2446 tttttcgtacttcagctcaagaacttcaacctt 2414
>gb|AC148879.2| Chlamydomonas reinhardtii clone cr-36D8, complete sequence Length = 53591 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 454 cgcagctgctgctgccgcatccgca 478 ||||||||||||||||||| ||||| Sbjct: 40879 cgcagctgctgctgccgcagccgca 40903
>gb|U28374.1|YSCD9740 Saccharomyces cerevisiae chromosome IV cosmid 9740 Length = 43887 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 ttactgccgcagctgctgctgccgc 471 |||||||||| |||||||||||||| Sbjct: 4383 ttactgccgctgctgctgctgccgc 4407
>dbj|AB016430.1| Saccharomyces cerevisiae MHR1 gene, complete cds Length = 941 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 ttactgccgcagctgctgctgccgc 471 |||||||||| |||||||||||||| Sbjct: 886 ttactgccgctgctgctgctgccgc 910
>ref|XM_640137.1| Dictyostelium discoideum hypothetical protein (DDB0168743), partial mRNA Length = 1845 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 162 acatgatacttcatttgaggaatg 185 ||||||||||||||| |||||||| Sbjct: 1434 acatgatacttcattggaggaatg 1457
>gb|AY747307.1| Nosema spodopterae large subunit ribosomal RNA gene, internal transcribed spacer, small subunit ribosomal RNA gene, intergenic spacer , and 5S ribosomal RNA gene, complete sequence Length = 4446 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 ctgttgaaggaagtgtgttg 267 |||||||||||||||||||| Sbjct: 4333 ctgttgaaggaagtgtgttg 4314
>gb|AC010123.9| Drosophila melanogaster clone BACR35O22, complete sequence Length = 160444 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ctgccgcagctgctgctgcc 469 |||||||||||||||||||| Sbjct: 126603 ctgccgcagctgctgctgcc 126622
>ref|XM_591114.2| PREDICTED: Bos taurus similar to ARP5 actin-related protein 5 homolog (LOC540037), mRNA Length = 3439 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 934 gccgcagctgctgctgccgc 915
>gb|AC147563.4| Mus musculus BAC clone RP23-231H21 from chromosome 10, complete sequence Length = 236428 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 449 actgccgcagctgctgctgc 468 |||||||||||||||||||| Sbjct: 13066 actgccgcagctgctgctgc 13047
>gb|AC131099.4| Mus musculus BAC clone RP23-15N12 from chromosome 13, complete sequence Length = 208298 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 562 gccttcttcaaactttagctcaag 585 ||||| |||||||||||||||||| Sbjct: 5187 gccttattcaaactttagctcaag 5164
>ref|XM_454742.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E17633g predicted mRNA Length = 3273 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 tactgccgcagctgctgctgccgc 471 |||||||| ||||||||||||||| Sbjct: 162 tactgccgaagctgctgctgccgc 139
>gb|AC116963.2| Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence Length = 257109 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 acatgatacttcatttgaggaatg 185 ||||||||||||||| |||||||| Sbjct: 20164 acatgatacttcattggaggaatg 20141
>ref|XM_534418.2| PREDICTED: Canis familiaris similar to ARP5 actin-related protein 5 homolog (LOC477227), mRNA Length = 1092 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 694 gccgcagctgctgctgccgc 675
>ref|XM_751868.1| Ustilago maydis 521 hypothetical protein (UM00814.1) partial mRNA Length = 4011 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tgccgcagctgctgctgccg 470 |||||||||||||||||||| Sbjct: 3255 tgccgcagctgctgctgccg 3274
>ref|XM_852484.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 26 (LOC612751), mRNA Length = 2761 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1884 ccgcagctgctgctgccgca 1903
>ref|XM_852444.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 25 (LOC612751), mRNA Length = 2038 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1161 ccgcagctgctgctgccgca 1180
>ref|XM_852403.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 24 (LOC612751), mRNA Length = 2105 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1228 ccgcagctgctgctgccgca 1247
>ref|XM_852602.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 29 (LOC612751), mRNA Length = 2776 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1899 ccgcagctgctgctgccgca 1918
>ref|XM_852562.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 28 (LOC612751), mRNA Length = 2411 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1534 ccgcagctgctgctgccgca 1553
>ref|XM_852522.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 27 (LOC612751), mRNA Length = 2809 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1932 ccgcagctgctgctgccgca 1951
>ref|XM_852363.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 23 (LOC612751), mRNA Length = 2746 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1869 ccgcagctgctgctgccgca 1888
>ref|XM_852324.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 22 (LOC612751), mRNA Length = 2905 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2028 ccgcagctgctgctgccgca 2047
>ref|XM_852279.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 21 (LOC612751), mRNA Length = 2626 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1749 ccgcagctgctgctgccgca 1768
>ref|XM_851864.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 12 (LOC612751), mRNA Length = 2842 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1980 ccgcagctgctgctgccgca 1999
>ref|XM_851825.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 11 (LOC612751), mRNA Length = 2794 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1917 ccgcagctgctgctgccgca 1936
>ref|XM_852241.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 20 (LOC612751), mRNA Length = 2765 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 1888 ccgcagctgctgctgccgca 1907
>ref|XM_852159.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 19 (LOC612751), mRNA Length = 2911 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2034 ccgcagctgctgctgccgca 2053
>ref|XM_852119.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 18 (LOC612751), mRNA Length = 2851 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2028 ccgcagctgctgctgccgca 2047
>ref|XM_852073.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 17 (LOC612751), mRNA Length = 2824 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2028 ccgcagctgctgctgccgca 2047
>ref|XM_852031.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 16 (LOC612751), mRNA Length = 3055 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2178 ccgcagctgctgctgccgca 2197
>ref|XM_851946.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 14 (LOC612751), mRNA Length = 2903 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2028 ccgcagctgctgctgccgca 2047
>ref|XM_851905.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 13 (LOC612751), mRNA Length = 2869 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2007 ccgcagctgctgctgccgca 2026
>ref|XM_851739.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 9 (LOC612751), mRNA Length = 1370 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 493 ccgcagctgctgctgccgca 512
>ref|XM_851615.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 6 (LOC612751), mRNA Length = 2905 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2028 ccgcagctgctgctgccgca 2047
>ref|XM_851582.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 5 (LOC612751), mRNA Length = 2922 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2028 ccgcagctgctgctgccgca 2047
>ref|XM_851497.1| PREDICTED: Canis familiaris similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1), transcript variant 3 (LOC612751), mRNA Length = 3067 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 ccgcagctgctgctgccgca 472 |||||||||||||||||||| Sbjct: 2190 ccgcagctgctgctgccgca 2209
>gb|AC123841.4| Mus musculus BAC clone RP23-400M7 from chromosome 13, complete sequence Length = 203062 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 562 gccttcttcaaactttagctcaag 585 ||||| |||||||||||||||||| Sbjct: 7902 gccttattcaaactttagctcaag 7925
>emb|AL445423.13| Human DNA sequence from clone RP11-295M18 on chromosome 1 Contains the 3' end of a novel gene (FLJ22390), two novel genes, the HLX1 gene for H2.0-like homeo box 1 (Drosophila) and four CpG islands, complete sequence Length = 177941 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gagttctaggggcatcactt 212 |||||||||||||||||||| Sbjct: 173629 gagttctaggggcatcactt 173648
>emb|AL391992.8| Human DNA sequence from clone RP11-2N7 on chromosome 10, complete sequence Length = 97655 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 aactacagaaatcataagaa 245 |||||||||||||||||||| Sbjct: 18472 aactacagaaatcataagaa 18453
>emb|Z29361.1|DMBTDGN D.melanogaster (Canton S) BTD gene Length = 2642 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 699 gccgcagctgctgctgccgc 680
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 tactgccgcagctgctgctgccgc 471 |||||||| ||||||||||||||| Sbjct: 1565306 tactgccgaagctgctgctgccgc 1565329
>emb|AL445066.1|TACID4 Thermoplasma acidophilum complete genome; segment 4/5 Length = 297750 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 638 caccttattgaaagcttctt 657 |||||||||||||||||||| Sbjct: 185647 caccttattgaaagcttctt 185666
>emb|AJ131022.1|DME131022 Drosophila melanogaster D-Sp1 gene for C2H2 zinc finger transcription factor Length = 3071 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 1376 gccgcagctgctgctgccgc 1357
>gb|AC094527.7| Rattus norvegicus 5 BAC CH230-4L11 (Children's Hospital Oakland Research Institute) complete sequence Length = 216616 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 agaagcaagtaacactgaca 157 |||||||||||||||||||| Sbjct: 73604 agaagcaagtaacactgaca 73623
>emb|AL773517.4| Mouse DNA sequence from clone RP24-170J19 on chromosome 4 Contains a t-complex protein 1 (Tcp1) pseudogene, complete sequence Length = 167940 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 564 cttcttcaaactttagctcaagca 587 |||||||||||||||||| ||||| Sbjct: 47914 cttcttcaaactttagcttaagca 47937
>gb|AC010051.9| Drosophila melanogaster 3L BAC RP98-3J2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184424 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 100558 gccgcagctgctgctgccgc 100539
>gb|AC023702.4| Drosophila melanogaster X BAC RP98-24L2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 159970 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 157115 gccgcagctgctgctgccgc 157096 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 98331 gccgcagctgctgctgccgc 98312
>ref|NM_206506.1| Drosophila melanogaster osa CG7467-RC, transcript variant C (osa), mRNA Length = 10221 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 8103 gccgcagctgctgctgccgc 8084
>ref|NM_169775.1| Drosophila melanogaster osa CG7467-RA, transcript variant A (osa), mRNA Length = 10662 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 8544 gccgcagctgctgctgccgc 8525
>ref|NM_168879.2| Drosophila melanogaster skuld CG9936-RC, transcript variant C (skd), mRNA Length = 10090 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 3728 gccgcagctgctgctgccgc 3709
>ref|NM_167200.1| Drosophila melanogaster Sp1 CG1343-RB, transcript variant B (Sp1), mRNA Length = 2020 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 858 gccgcagctgctgctgccgc 839
>ref|NM_132351.1| Drosophila melanogaster Sp1 CG1343-RA, transcript variant A (Sp1), mRNA Length = 2076 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 914 gccgcagctgctgctgccgc 895
>ref|NM_079914.2| Drosophila melanogaster skuld CG9936-RD, transcript variant D (skd), mRNA Length = 10458 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 4096 gccgcagctgctgctgccgc 4077
>ref|NM_079668.2| Drosophila melanogaster osa CG7467-RB, transcript variant B (osa), mRNA Length = 10701 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 8583 gccgcagctgctgctgccgc 8564
>ref|NM_078545.2| Drosophila melanogaster buttonhead CG12653-RA (btd), mRNA Length = 2947 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 1136 gccgcagctgctgctgccgc 1117
>gb|AC023886.7| Homo sapiens BAC clone RP11-402J6 from 4, complete sequence Length = 179697 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 caagtaacactgacagaaaa 162 |||||||||||||||||||| Sbjct: 129643 caagtaacactgacagaaaa 129662
>gb|AY084183.1| Drosophila melanogaster RE62247 full insert cDNA Length = 2949 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 1135 gccgcagctgctgctgccgc 1116
>gb|AF324425.1|AF324425 Drosophila melanogaster transcriptional coactivator blind spot (bli) mRNA, complete cds Length = 9789 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 3656 gccgcagctgctgctgccgc 3637
>tpg|BK000438.1| TPA: TPA_exp: Homo sapiens RING finger protein COP1 gene, complete cds Length = 421987 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gttgaaatgaatcatcacat 283 |||||||||||||||||||| Sbjct: 257697 gttgaaatgaatcatcacat 257678
>gb|AF364332.1|AF364332 Antheraea pernyi fibroin mRNA, partial cds Length = 1413 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 1205 gccgcagctgctgctgccgc 1186
>gb|BT022537.1| Drosophila melanogaster IP06483 full insert cDNA Length = 1004 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ctgccgcagctgctgctgcc 469 |||||||||||||||||||| Sbjct: 120 ctgccgcagctgctgctgcc 139
>gb|AC009742.4|AC009742 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR21K03, complete sequence Length = 178100 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 123942 gccgcagctgctgctgccgc 123961
>gb|AC007810.6|AC007810 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR14A01, complete sequence Length = 176735 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 17823 gccgcagctgctgctgccgc 17842
>gb|AC005966.2|T2K10 Arabidopsis thaliana chromosome 1 BAC T2K10 sequence, complete sequence Length = 90284 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ggaagtgtgttgaaatgaat 275 |||||||||||||||||||| Sbjct: 83252 ggaagtgtgttgaaatgaat 83233
>gb|AF083334.1|AF083334 Antheraea pernyi fibroin gene, complete cds Length = 9282 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 9044 gccgcagctgctgctgccgc 9025
>gb|AC130390.4| Drosophila melanogaster X BAC RP98-21O19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 184175 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 98620 gccgcagctgctgctgccgc 98601 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 39836 gccgcagctgctgctgccgc 39817
>gb|AY204472.1| Myxococcus xanthus clone C1226 adventurous gliding motility protein C, YgbF-like protein, topoisomerase, TolQ-like protein, TolR-like protein, hypothetical proteins, GidA-like protein (gidA), adventurous gliding motility protein U (aglU), kinesin-related protein, integrase/recombinase, ion transport protein, HslV-like protein, HslU-like protein, and N-acetylornithine aminotransferase-like protein genes, complete cds; and hypothetical protein gene, partial cds Length = 25315 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 ctgccgcatccgcatcatgc 484 |||||||||||||||||||| Sbjct: 13760 ctgccgcatccgcatcatgc 13741
>gb|AF162663.1|AF162663 Myxococcus xanthus glucose-inhibited division protein (gidA) and AglU (aglU) genes, complete cds Length = 4858 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 ctgccgcatccgcatcatgc 484 |||||||||||||||||||| Sbjct: 1761 ctgccgcatccgcatcatgc 1742
>gb|AF227215.1|AF227215 Drosophila melanogaster Pap/DTRAP240 (pap) gene, complete cds Length = 25159 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 18929 gccgcagctgctgctgccgc 18910
>gb|AF227214.1|AF227214 Drosophila melanogaster Pap/DTRAP240 (pap) mRNA, complete cds Length = 8880 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 3312 gccgcagctgctgctgccgc 3293
>gb|AC007514.5|AC007514 Homo sapiens chromosome 14 clone BACs 209A20 and 396N8 map 14q31, complete sequence Length = 177720 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 tagtctttacaaaacaaagg 53 |||||||||||||||||||| Sbjct: 175606 tagtctttacaaaacaaagg 175587
>gb|AF226855.1|AF226855 Drosophila melanogaster TRAP240 mRNA, complete cds Length = 10473 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 4098 gccgcagctgctgctgccgc 4079
>ref|XM_315578.2| Anopheles gambiae str. PEST ENSANGP00000017596 (ENSANGG00000015107), partial mRNA Length = 681 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 206 gccgcagctgctgctgccgc 187
>gb|AE003718.3| Drosophila melanogaster chromosome 3R, section 56 of 118 of the complete sequence Length = 253101 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 224086 gccgcagctgctgctgccgc 224105
>gb|AE003593.2| Drosophila melanogaster chromosome 3L, section 74 of 83 of the complete sequence Length = 313157 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 48123 gccgcagctgctgctgccgc 48142
>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete sequence Length = 314549 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ctgccgcagctgctgctgcc 469 |||||||||||||||||||| Sbjct: 192871 ctgccgcagctgctgctgcc 192890
>gb|AE003448.4| Drosophila melanogaster chromosome X, section 32 of 74 of the complete sequence Length = 318665 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 125509 gccgcagctgctgctgccgc 125490 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 66725 gccgcagctgctgctgccgc 66706
>dbj|AB035272.2| Matricaria chamomilla McTBP1 mRNA for TAT-binding protein homolog, complete cds Length = 1540 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 cttctcagcaatcttcttta 449 |||||||||||||||||||| Sbjct: 1194 cttctcagcaatcttcttta 1175
>emb|AL590723.13| Human DNA sequence from clone RP11-492I21 on chromosome 1 Contains part of the gene for constitutive photomorphogenic protein (COP1) and a novel gene, complete sequence Length = 178223 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 gttgaaatgaatcatcacat 283 |||||||||||||||||||| Sbjct: 84873 gttgaaatgaatcatcacat 84892
>gb|AF053091.1|AF053091 Drosophila melanogaster eyelid (eld) mRNA, complete cds Length = 10601 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 8483 gccgcagctgctgctgccgc 8464
>emb|X55021.1|EHVSAB E.histolytica mRNA for nonpathogenic immuno-dominant variable surface antigen Length = 1410 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tgaaatgaatcatcacatgc 285 |||||||||||||||||||| Sbjct: 150 tgaaatgaatcatcacatgc 169
>dbj|D83241.1| Antheraea pernyi mRNA for Antheraea pernyi fibroin, partial cds Length = 1350 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gccgcagctgctgctgccgc 471 |||||||||||||||||||| Sbjct: 1162 gccgcagctgctgctgccgc 1143 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,021,272 Number of Sequences: 3902068 Number of extensions: 6021272 Number of successful extensions: 120376 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 91 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120065 Number of HSP's gapped (non-prelim): 311 length of query: 658 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 635 effective length of database: 17,143,297,704 effective search space: 10885994042040 effective search space used: 10885994042040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
