ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY335488.1| Oryza sativa (japonica cultivar-group) enolase (E... 64 2e-07
2gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome... 64 2e-07
3gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome... 64 2e-07
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 64 2e-07
5dbj|AK073662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 2e-07
6gb|U09450.1|OSU09450 Oryza sativa enolase mRNA, complete cds 64 2e-07
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 64 2e-07
8gb|DQ083194.1| Oryza sativa (indica cultivar-group) clone 5S7E59... 52 7e-04
9dbj|AK099292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.011
10emb|AL356512.19| Human DNA sequence from clone RP11-156E8 on chr... 42 0.66
11emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 42 0.66
12gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
14gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.6

>gb|AY335488.1| Oryza sativa (japonica cultivar-group) enolase (Eno1) mRNA, complete
            cds
          Length = 1659

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 138  accaaaattggagcaagtttgggggtacatat 169
            ||||||||||||||||||||||||||||||||
Sbjct: 1546 accaaaattggagcaagtttgggggtacatat 1515



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>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0015J03, complete sequence
          Length = 165933

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                             
Query: 138   accaaaattggagcaagtttgggggtacatat 169
             ||||||||||||||||||||||||||||||||
Sbjct: 58107 accaaaattggagcaagtttgggggtacatat 58138



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>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBb0015J03, complete sequence
          Length = 135940

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 138  accaaaattggagcaagtttgggggtacatat 169
            ||||||||||||||||||||||||||||||||
Sbjct: 1894 accaaaattggagcaagtttgggggtacatat 1863



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                               
Query: 138     accaaaattggagcaagtttgggggtacatat 169
               ||||||||||||||||||||||||||||||||
Sbjct: 4290566 accaaaattggagcaagtttgggggtacatat 4290597



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>dbj|AK073662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048K07, full
            insert sequence
          Length = 1651

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 138  accaaaattggagcaagtttgggggtacatat 169
            ||||||||||||||||||||||||||||||||
Sbjct: 1577 accaaaattggagcaagtttgggggtacatat 1546



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>gb|U09450.1|OSU09450 Oryza sativa enolase mRNA, complete cds
          Length = 1687

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                            
Query: 138  accaaaattggagcaagtttgggggtacatat 169
            ||||||||||||||||||||||||||||||||
Sbjct: 1608 accaaaattggagcaagtttgggggtacatat 1577



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                               
Query: 138     accaaaattggagcaagtttgggggtacatat 169
               ||||||||||||||||||||||||||||||||
Sbjct: 4291387 accaaaattggagcaagtttgggggtacatat 4291418



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>gb|DQ083194.1| Oryza sativa (indica cultivar-group) clone 5S7E59 mRNA sequence
          Length = 127

 Score = 52.0 bits (26), Expect = 7e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 138 accaaaattggagcaagtttgggggt 163
           ||||||||||||||||||||||||||
Sbjct: 26  accaaaattggagcaagtttgggggt 1



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>dbj|AK099292.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133I04, full
            insert sequence
          Length = 1603

 Score = 48.1 bits (24), Expect = 0.011
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 138  accaaaattggagcaagtttgggggtacatat 169
            |||||||| |||||||||| ||||||||||||
Sbjct: 1529 accaaaatgggagcaagttggggggtacatat 1498



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>emb|AL356512.19| Human DNA sequence from clone RP11-156E8 on chromosome 1 Contains the
             5' end of the gene for a novel protein (FLJ33608) and a
             CpG island, complete sequence
          Length = 74029

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 74    ttactacagatccaacaggttaagg 98
             ||||||||||||| |||||||||||
Sbjct: 43280 ttactacagatcccacaggttaagg 43304



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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 114     cgtgcttgctcgctcaccacaaaga 138
               |||||||||||| ||||||||||||
Sbjct: 1944774 cgtgcttgctcggtcaccacaaaga 1944750



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>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0014O08
              map near S2137, complete sequence
          Length = 134033

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     gatgccaacagcccaacagt 73
              ||||||||||||||||||||
Sbjct: 100666 gatgccaacagcccaacagt 100647



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      gatgccaacagcccaacagt 73
               ||||||||||||||||||||
Sbjct: 8689500 gatgccaacagcccaacagt 8689481



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      gatgccaacagcccaacagt 73
               ||||||||||||||||||||
Sbjct: 8760263 gatgccaacagcccaacagt 8760244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,093,326
Number of Sequences: 3902068
Number of extensions: 1093326
Number of successful extensions: 67805
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67680
Number of HSP's gapped (non-prelim): 125
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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