ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags8b05 |
|---|---|
| Clone Library Name | barley_pub |
>YK17_SCHPO (Q9HDY3) Membrane protein PB1A10.07c| Length = 441 Score = 79.7 bits (195), Expect = 7e-15 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 11/155 (7%) Frame = -3 Query: 653 ECNGLHNHSKAMXXXXXXXXXXXXXXSVVYSAVRAGSSATVLSA-----PDSPRAGADKP 489 +CN N + +++YSAVRA SS + DS G P Sbjct: 290 QCNPWGNSASGTREFSKVIGAAFTFFTILYSAVRAASSRESDDSYSYLYADSHDMGVSTP 349 Query: 488 LLPFSKADEEETKDVAKPVTYSYSFFHLIFSLASMYSAMLLTGWST-SVGES---GMLVD 321 L S +++ D Y++ +FH++F LA+ Y+A LLT W+T SV E+ + V Sbjct: 350 LEDGSSEEDKHQSD------YNFIWFHIVFVLAAFYTASLLTNWNTTSVYENQKNDVFVR 403 Query: 320 VG--WPSVWVRIATQWATAGLFIWSLVAPLLFPDR 222 +G + +VWV+I T W GL++WS +AP+ FP R Sbjct: 404 IGFSYAAVWVKIITSWVCHGLYVWSCLAPVFFPYR 438
>SERC2_MOUSE (Q8K0E7) Serine incorporator 2 (Tumor differentially expressed| 2-like) Length = 450 Score = 78.6 bits (192), Expect = 2e-14 Identities = 38/73 (52%), Positives = 49/73 (67%) Frame = -3 Query: 434 VTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIW 255 VTYSYSFFH LAS++ M LT W S GE+ ++ W SVWV+I WA L++W Sbjct: 379 VTYSYSFFHFCLVLASLHVMMTLTNWY-SPGETRKMIST-WTSVWVKICASWAGLFLYLW 436 Query: 254 SLVAPLLFPDREF 216 +LVAPLL P+R+F Sbjct: 437 TLVAPLLLPNRDF 449
>SERC3_HUMAN (Q13530) Serine incorporator 3 (Tumor differentially expressed| protein 1) Length = 473 Score = 74.3 bits (181), Expect = 3e-13 Identities = 39/112 (34%), Positives = 61/112 (54%) Frame = -3 Query: 551 AGSSATVLSAPDSPRAGADKPLLPFSKADEEETKDVAKPVTYSYSFFHLIFSLASMYSAM 372 +GS + +L + A ++ P D E+ + V YSYS FHL+ LAS+Y M Sbjct: 367 SGSDSVILGDTTTSGASDEEDGQPRRAVDNEK-----EGVQYSYSLFHLMLCLASLYIMM 421 Query: 371 LLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSLVAPLLFPDREF 216 LT W + + + WP+VWV+I++ W L++W+LVAPL+ R+F Sbjct: 422 TLTSWYSPDAKFQSMTSK-WPAVWVKISSSWVCLLLYVWTLVAPLVLTSRDF 472
>SERC2_HUMAN (Q96SA4) Serine incorporator 2 (Tumor differentially expressed| 2-like) Length = 456 Score = 72.0 bits (175), Expect = 1e-12 Identities = 35/73 (47%), Positives = 47/73 (64%) Frame = -3 Query: 434 VTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIW 255 VTYSYSFFH LAS++ M LT W GE+ ++ W +VWV+I WA L++W Sbjct: 385 VTYSYSFFHFCLVLASLHVMMTLTNWYKP-GETRKMIST-WTAVWVKICASWAGLLLYLW 442 Query: 254 SLVAPLLFPDREF 216 +LVAPLL +R+F Sbjct: 443 TLVAPLLLRNRDF 455
>SERC1_MOUSE (Q9QZI8) Serine incorporator 1 (Tumor differentially expressed| protein 2) (Tumor differentially expressed 1 protein-like) (Membrane protein TMS-2) (Axotomy-induced glyco/Golgi protein 2) Length = 453 Score = 70.5 bits (171), Expect = 4e-12 Identities = 33/73 (45%), Positives = 46/73 (63%) Frame = -3 Query: 434 VTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIW 255 VTYSYSFFH + LAS+Y M LT W E + W +VWV+I++ W L++W Sbjct: 382 VTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGLVLYVW 439 Query: 254 SLVAPLLFPDREF 216 +LVAPL+ +R+F Sbjct: 440 TLVAPLVLTNRDF 452
>SERC1_HUMAN (Q9NRX5) Serine incorporator 1 (Tumor differentially expressed| protein 2) (Tumor differentially expressed 1 protein-like) Length = 453 Score = 70.5 bits (171), Expect = 4e-12 Identities = 33/73 (45%), Positives = 46/73 (63%) Frame = -3 Query: 434 VTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIW 255 VTYSYSFFH + LAS+Y M LT W E + W +VWV+I++ W L++W Sbjct: 382 VTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVW 439 Query: 254 SLVAPLLFPDREF 216 +LVAPL+ +R+F Sbjct: 440 TLVAPLVLTNRDF 452
>SERC3_MOUSE (Q9QZI9) Serine incorporator 3 (Tumor differentially expressed| protein 1) (Membrane protein TMS-1) (Axotomy-induced glycoprotein 1) (Axotomy-induced glyco/Golgi protein 1) (AIGP-1) Length = 472 Score = 65.1 bits (157), Expect = 2e-10 Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 9/128 (7%) Frame = -3 Query: 572 VVYSAVRAGSSATVLSAPDSPRAGADKPLL--PFSKADEEE-------TKDVAKPVTYSY 420 ++YS+ R S++ V S G+D +L + A++EE + + V YSY Sbjct: 348 LIYSSFRTSSNSQVNKLTLS---GSDSVILGDTTNGANDEEDGQPRRAVDNEKEGVQYSY 404 Query: 419 SFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSLVAP 240 SFFHL+ AS+Y M +T W S V W +VW ++ + W L++W+LVAP Sbjct: 405 SFFHLMLCCASLYIMMTITSWY-SPDAKFQKVSSKWLAVWFKMGSSWLCLLLYLWTLVAP 463 Query: 239 LLFPDREF 216 L+ R+F Sbjct: 464 LVLTGRDF 471
>TMS1_YEAST (Q12116) Membrane protein TMS1| Length = 473 Score = 53.5 bits (127), Expect = 5e-07 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Frame = -3 Query: 470 ADEEETKDVAKPVTYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVG--WPSVWV 297 A + + D Y+Y+ FH+IF LA+ + A+LLT + + + G + VG + WV Sbjct: 383 AMDNQNDDERTGTKYNYTLFHVIFFLATQWIAILLT-INVTQDDVGDFIPVGRTYFYSWV 441 Query: 296 RIATQWATAGLFIWSLVAPLLFPDR 222 +I + W L+ W++VAP + PDR Sbjct: 442 KIVSAWICYALYGWTVVAPAIMPDR 466
>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Anion exchanger 3 brain isoform) Length = 1233 Score = 30.8 bits (68), Expect = 3.7 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +3 Query: 324 DKHSALPNRGRPASQEHGRVHACQGEDEVEE 416 +K SA P+ G P QE G A +GE+E EE Sbjct: 113 EKTSAPPSEGTPPIQEEGGAGAHEGEEEEEE 143
>RDRP_TVCV (Q88920) RNA-directed RNA polymerase (EC 2.7.7.48) (180 kDa| protein) [Contains: Methyltransferase/RNA helicase (MT/HEL) (125 kDa protein)] Length = 1601 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/56 (25%), Positives = 31/56 (55%) Frame = -3 Query: 557 VRAGSSATVLSAPDSPRAGADKPLLPFSKADEEETKDVAKPVTYSYSFFHLIFSLA 390 V+ A + P+ AD+ +L + KA+E ++ D++KP+ S +++ + L+ Sbjct: 508 VKVAEQALEIKVPELYCTFADRLVLQYKKAEEFQSCDLSKPLEESEKYYNALSELS 563
>CCSA_CYAPA (P48257) Cytochrome c biogenesis protein ccsA| Length = 322 Score = 29.6 bits (65), Expect = 8.2 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = -3 Query: 431 TYSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWS 252 T+S+ F + I + A+ W + SGML+ S+++ + T+W TAG F S Sbjct: 12 TFSF-FIYFILTFLFFAQAIFKNHWLKTFNFSGMLI--ANVSIFLLLITRWITAGYFPIS 68 Query: 251 LVAPLLF 231 + LF Sbjct: 69 NLYESLF 75
>PA2GD_MOUSE (Q9WVF6) Group IID secretory phospholipase A2 precursor (EC| 3.1.1.4) (Phosphatidylcholine 2-acylhydrolase GIID) (GIID sPLA2) (PLA2IID) (sPLA(2)-IID) (Secretory-type PLA, stroma-associated homolog) Length = 144 Score = 29.6 bits (65), Expect = 8.2 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 2/41 (4%) Frame = -2 Query: 345 WGERNACRC--RVAVCLGQDRDPVGNSRPVHLVPRCSPPVP 229 W ER C C VA+CL Q+ D + PRC P Sbjct: 102 WCERQLCACDKEVALCLKQNLDSYNKRLRYYWRPRCKGKTP 142
>NUOA_SHIFL (P0AFC6) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 8.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = -3 Query: 428 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 249 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 248 VAPLLF 231 +A L++ Sbjct: 111 LAGLVY 116
>NUOA_ECOLI (P0AFC3) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 8.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = -3 Query: 428 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 249 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 248 VAPLLF 231 +A L++ Sbjct: 111 LAGLVY 116
>NUOA_ECOL6 (P0AFC4) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 8.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = -3 Query: 428 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 249 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 248 VAPLLF 231 +A L++ Sbjct: 111 LAGLVY 116
>NUOA_ECO57 (P0AFC5) NADH-quinone oxidoreductase chain A (EC 1.6.99.5) (NADH| dehydrogenase I, chain A) (NDH-1, chain A) (NUO1) Length = 147 Score = 29.6 bits (65), Expect = 8.2 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = -3 Query: 428 YSYSFFHLIFSLASMYSAMLLTGWSTSVGESGMLVDVGWPSVWVRIATQWATAGLFIWSL 249 Y + F +IF + ++Y L WSTS+ ESG WV + A +FI+ L Sbjct: 69 YLVAMFFVIFDVEALY----LFAWSTSIRESG----------WV----GFVEAAIFIFVL 110 Query: 248 VAPLLF 231 +A L++ Sbjct: 111 LAGLVY 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,068,341 Number of Sequences: 219361 Number of extensions: 1845431 Number of successful extensions: 5785 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5775 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
