Clone Information

BLAST Search Result

Clone Name	rbags7m03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)	121	5e-28
2	RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)	86	3e-17
3	RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)	84	6e-17
4	RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related prot...	78	4e-15
5	RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6	76	2e-14
6	RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enha...	76	2e-14
7	RL6_SCHPO (P79071) 60S ribosomal protein L6	75	3e-14
8	RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enha...	75	3e-14
9	RL6_PIG (Q2YGT9) 60S ribosomal protein L6	75	4e-14
10	RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6	74	1e-13
11	RL6_CAEEL (P47991) 60S ribosomal protein L6	51	8e-07
12	CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypep...	33	0.12
13	CYLC2_HUMAN (Q14093) Cylicin-2 (Cylicin II) (Multiple-band polyp...	32	0.36
14	FAS1_SCHAM (P10675) Fasciclin-1 precursor (Fasciclin I) (FAS I) ...	30	1.1
15	RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2...	30	1.4
16	RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2...	30	1.4
17	MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12...	30	1.8
18	MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)	30	1.8
19	MYPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A ...	30	1.8
20	GGLO_RAT (P10867) L-gulonolactone oxidase (EC 1.1.3.8) (LGO) (L-...	30	1.8
21	PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein...	29	3.1
22	SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (S...	29	3.1
23	RL19_DEIRA (Q9RWB4) 50S ribosomal protein L19	29	3.1
24	OVGP1_PIG (Q28990) Oviduct-specific glycoprotein precursor (Ovid...	29	3.1
25	BIR1_SCHPO (O14064) Protein bir1 (Chromosome segregation protein...	28	4.0
26	Y637_METTH (O26734) UPF0235 protein MTH637	28	4.0
27	HUB1_SCHPO (O94650) Ubiquitin-like modifier hub1	28	4.0
28	ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3...	28	4.0
29	ATPF_BUCAI (P57120) ATP synthase B chain (EC 3.6.3.14)	28	4.0
30	PHF20_HUMAN (Q9BVI0) PHD finger protein 20 (Hepatocellular carci...	28	5.2
31	YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4...	28	5.2
32	SYF2_DEBHA (Q6BVE0) Pre-mRNA-splicing factor SYF2	28	5.2
33	GGLO_PIG (Q8HXW0) L-gulonolactone oxidase (EC 1.1.3.8) (LGO) (L-...	28	5.2
34	GGLO_BOVIN (Q3ZC33) L-gulonolactone oxidase (EC 1.1.3.8) (LGO) (...	28	5.2
35	ENPL_CATRO (P35016) Endoplasmin homolog precursor (GRP94 homolog)	28	6.8
36	T1RX_MYCPN (P75431) Putative type I restriction enzyme MpnORFDP ...	28	6.8
37	RAD50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase	28	6.8
38	NAR4_PANTR (Q95NE0) Ecto-ADP-ribosyltransferase 4 precursor (EC ...	28	6.8
39	NAR4_HUMAN (Q93070) Ecto-ADP-ribosyltransferase 4 precursor (EC ...	28	6.8
40	SYI_CORJK (Q4JW85) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	28	6.8
41	VAT1_BRARE (Q8JFV8) Synaptic vesicle membrane protein VAT-1 homo...	28	6.8
42	Y741_STAAC (Q5HHY7) UPF0178 protein SACOL0741	28	6.8
43	Y681_STAAM (P67336) UPF0178 protein SAV0681	28	6.8
44	Y646_STAAS (Q6GBE9) UPF0178 protein SAS0646	28	6.8
45	Y643_STAAW (Q8NXQ5) UPF0178 protein MW0643	28	6.8
46	Y636_STAAN (P67337) UPF0178 protein SA0636	28	6.8
47	TNNI3_HORSE (Q5PYI0) Troponin I, cardiac muscle (Cardiac troponi...	27	8.9
48	BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	27	8.9
49	Y1420_CLOAB (Q97J66) Protein CAC1420	27	8.9
50	UBL5_DROME (Q9V998) Ubiquitin-like protein 5	27	8.9
51	BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein...	27	8.9
52	ERD2_SCHPO (O94270) ER lumen protein retaining receptor	27	8.9
53	BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-)...	27	8.9
54	RS5_MYCPU (Q98PZ9) 30S ribosomal protein S5	27	8.9
55	DRL36_ARATH (Q8VZC7) Probable disease resistance protein At5g45510	27	8.9
56	LCP5_YEAST (P40079) U3 small nucleolar ribonucleoprotein protein...	27	8.9

>RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)|
          Length = 234

 Score =  121 bits (303), Expect = 5e-28
 Identities = 56/94 (59%), Positives = 74/94 (78%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 226
           I+TST++DIS VN++KFDDKYF ++ + + KK EGE FE+EK+    LP  KKDDQK +D
Sbjct: 141 IATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVD 200

Query: 225 TELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
             L+KAI+ VP+LK+YLGARFSL+ G KPHE+ F
Sbjct: 201 VALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

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>RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)|
          Length = 175

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 42/94 (44%), Positives = 63/94 (67%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 226
           I+TST++ +  VN++KF+ +YFA+EK T+ +K E  LF  ++  TK +   + +DQKV+D
Sbjct: 84  IATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQ--TKEIKTERVEDQKVVD 141

Query: 225 TELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
             L+  I   P LK YL A FSL++GDKPH + F
Sbjct: 142 KALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 175

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>RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)|
          Length = 175

 Score = 84.3 bits (207), Expect = 6e-17
 Identities = 42/94 (44%), Positives = 62/94 (65%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 226
           I+TST++ +  VN++KF+ +YFA+EK T+ +K E  LF  ++   K +   + +DQKV+D
Sbjct: 84  IATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQN--KEIKAERVEDQKVVD 141

Query: 225 TELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
             LI  I   P LK YL A FSL++GDKPH + F
Sbjct: 142 KALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 175

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>RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related protein C140)|
          Length = 297

 Score = 78.2 bits (191), Expect = 4e-15
 Identities = 39/95 (41%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVI 229
           I+TST++DISKV + K   D YF ++   + +  EGE+F++EKE  + + + +K DQK +
Sbjct: 204 IATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYE-ITEQRKADQKAV 262

Query: 228 DTELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
           D++++  I AVP L+ YL ++FSL +G  PH++ F
Sbjct: 263 DSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 297

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>RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6|
          Length = 287

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 38/95 (40%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVI 229
           I+TST++DIS V + K   D YF ++K  + +  EGE+F++EKE  + + + +K DQK +
Sbjct: 194 IATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQ-ISEQRKVDQKAV 252

Query: 228 DTELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
           D++++  I AVP L+ YL + F+L +G  PH++ F
Sbjct: 253 DSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 287

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>RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
          Length = 295

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 38/95 (40%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVI 229
           I+TST++DIS V + K   D YF +++  + +  EGE+F++EKE  + + + +K DQK +
Sbjct: 202 IATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYE-ITEQRKADQKAV 260

Query: 228 DTELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
           D +++  I AVP L+ YL ++FSL +G  PH++ F
Sbjct: 261 DLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 295

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>RL6_SCHPO (P79071) 60S ribosomal protein L6|
          Length = 194

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 36/93 (38%), Positives = 61/93 (65%)
 Frame = -2

Query: 402 STSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDT 223
           +++ ++D+S V+++KF   YFA++K++   K + E F +E      LP  +  DQK +D 
Sbjct: 103 TSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKD-EAFFAENAPKNALPAERIADQKAVDA 161

Query: 222 ELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
           +L+ AI A+P++K YL A F+L +GD+PH M F
Sbjct: 162 KLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 194

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>RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enhancer|
           element-binding protein 107) (TAXREB107)
           (Neoplasm-related protein C140)
          Length = 287

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 37/95 (38%), Positives = 64/95 (67%), Gaps = 1/95 (1%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVI 229
           I+TST++DIS V + K   D YF ++K  + +  EGE+F++EKE  + + + +K DQK +
Sbjct: 194 IATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYE-ITEQRKIDQKAV 252

Query: 228 DTELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
           D++++  I A+P L+ YL + F+L +G  PH++ F
Sbjct: 253 DSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 287

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>RL6_PIG (Q2YGT9) 60S ribosomal protein L6|
          Length = 283

 Score = 75.1 bits (183), Expect = 4e-14
 Identities = 37/95 (38%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
 Frame = -2

Query: 405 ISTSTRLDISKVNM-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVI 229
           I+TST++DIS V + +   D YF ++K  + +  EGE+F++EKE  + + + +K DQK +
Sbjct: 190 IATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYE-ISEQRKVDQKAV 248

Query: 228 DTELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
           D+++++ I AVP L+ YL + F+L +G  PH++ F
Sbjct: 249 DSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 283

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>RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6|
          Length = 286

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 36/95 (37%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
 Frame = -2

Query: 405 ISTSTRLDISKVNM-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVI 229
           I+TST++DIS V + +   D YF ++K  + +  EGE+F++E+E  + + + +K DQK +
Sbjct: 193 IATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYE-ITEQRKVDQKAV 251

Query: 228 DTELIKAIDAVPDLKSYLGARFSLRDGDKPHEMTF 124
           D+++++ I AVP L+ YL + F+L +G  PH++ F
Sbjct: 252 DSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 286

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>RL6_CAEEL (P47991) 60S ribosomal protein L6|
          Length = 217

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
 Frame = -2

Query: 405 ISTSTRLDISKVNM-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVI 229
           I+TS ++++S V + +  +D+YF R  K+ A+K+   +F S K     + + +K D K +
Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKR--KSTAQKTGKNIFASGK-TEYTVSEQRKKDIKTV 179

Query: 228 DTELIKAIDAVPDLK---SYLGARFSLRDGDKPHEMTF 124
           D  ++ AI   P+ K    YLG RFSL     PH+M F
Sbjct: 180 DAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217

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>CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)|
          Length = 667

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
 Frame = -2

Query: 369 NMQKFDDKYFAREKKTRAKK----------SEGELFESEKEATKNLPDFKKDDQKVIDTE 220
           N +K   K    +KK  AKK          SEG+  +S+K++ K+  D KKDDQK    +
Sbjct: 442 NAKKDSKKGKKDDKKKDAKKDAVSTDADSESEGDAKKSKKDSKKDKKDLKKDDQKKPAMK 501

Query: 219 LIKAIDAVPDLKSYLGARFSLRDGDK 142
             ++ +   D +S    R S +D  K
Sbjct: 502 SKESTETESDWESKKVKRDSKKDTKK 527

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>CYLC2_HUMAN (Q14093) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)|
          Length = 348

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 351 DKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKA 208
           DK  + + K  A +SEGE   +EK++ K   D KK     I+ + +KA
Sbjct: 192 DKKDSNKGKDSATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKA 239



 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -2

Query: 384 DISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKD 244
           DI K   +K D K  +++ K  A+K +    ESE E      D KKD
Sbjct: 146 DIEKGKEEKLDAKKDSKKGKKDAEKGKDSATESEDEKGGAKKDNKKD 192

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>FAS1_SCHAM (P10675) Fasciclin-1 precursor (Fasciclin I) (FAS I) (FCN)|
          Length = 662

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQKFDDKYFAREKKTRAK-KSEGELFESEKEATKNLPDFKKDDQKVI 229
           ++ S  LD+    ++ F  + F  +K+   K + +   F    E  K LP  +K DQKVI
Sbjct: 174 LNQSENLDLGLHRVRSFRQRVFQNQKQNDFKLEGKHTFFIPVDEGFKPLPRPEKIDQKVI 233

Query: 228 DTELI 214
           D  +I
Sbjct: 234 DGHII 238

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>RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1378

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = -2

Query: 255 FKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRD---------GDKPHEMTF*VIWYKF 103
           FK+++   +  +L+     +PD  S+L   +  +D            P  M F  + YK 
Sbjct: 161 FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKK 220

Query: 102 QDLWKVFF 79
           QD+ K+F+
Sbjct: 221 QDIIKLFY 228

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>RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1378

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = -2

Query: 255 FKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRD---------GDKPHEMTF*VIWYKF 103
           FK+++   +  +L+     +PD  S+L   +  +D            P  M F  + YK 
Sbjct: 161 FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKK 220

Query: 102 QDLWKVFF 79
           QD+ K+F+
Sbjct: 221 QDIIKLFY 228

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>MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12A (Myosin|
            phosphatase-targeting subunit 1) (Myosin phosphatase
            target subunit 1) (Protein phosphatase myosin-binding
            subunit)
          Length = 1030

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 399  TSTRLDISKVNM--QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 226
            T  +L + K     ++F D+     +K   +  E  + E E+E  K LPD K D+Q++ D
Sbjct: 958  TDLKLQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEEL-KMLPDLKADNQRLKD 1016

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>MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)|
          Length = 1679

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = -2

Query: 402  STSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGEL---FESEKEATKNLPDFKKDDQKV 232
            S+S   +  KVNM+K  D+      K   KK +  L     SE E +K++   KK+  K 
Sbjct: 1380 SSSDAFEKLKVNMEKEKDRIIDERTKEFEKKLQETLNKSTSSEAEYSKDIETLKKEWLKE 1439

Query: 231  IDTELIKAI-DAVPDLK 184
             + E ++ I +A  +LK
Sbjct: 1440 YEDETLRRIKEAEENLK 1456

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>MYPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A (Myosin|
            phosphatase-targeting subunit 1) (Myosin phosphatase
            target subunit 1) (Protein phosphatase myosin-binding
            subunit) (MBSP) (Serine/threonine protein phosphatase PP1
            smooth muscle reg
          Length = 1032

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = -2

Query: 399  TSTRLDISKVNM--QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 226
            T  +L + K     ++F D+     +K   +  E  + E E+E  K LPD K D+Q++ D
Sbjct: 960  TDLKLQLEKATQRQERFADRSLLEMEKRERRALERRISEMEEEL-KMLPDLKADNQRLKD 1018

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>GGLO_RAT (P10867) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)|
           (L-gulono-gamma-lactone oxidase) (GLO)
          Length = 439

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 61  PEHTLEKKDFPQILKLVPDNLEGHLMR 141
           P+  L++  FP  LK V DNL+ HL R
Sbjct: 185 PQFHLQETSFPSTLKEVLDNLDSHLKR 211

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>PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein (CP-47|
           protein)
          Length = 508

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 182 LLRSGTASIALINSVSMTFWSSFLKSG 262
           LLR G     L +S++  FWS+F+ SG
Sbjct: 228 LLRMGNIETVLSSSIAAVFWSAFVVSG 254

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>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 336 REKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAID 202
           RE+ T  KKS G+    EK      P  +K+  K  D  + KA D
Sbjct: 417 RERSTSTKKSSGDRDGKEKVEKSTTPVKEKEHSKESDATVSKAAD 461

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>RL19_DEIRA (Q9RWB4) 50S ribosomal protein L19|
          Length = 166

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 327 KTRAKKSEGELFES-EKEATKNLPDFKKDDQKVIDTEL 217
           +T  K + GEL    E++ T+ LPDF+  D   +DT++
Sbjct: 2   QTHIKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKV 39

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>OVGP1_PIG (Q28990) Oviduct-specific glycoprotein precursor (Oviductal|
           glycoprotein) (Oviductin) (Estrogen-dependent oviduct
           protein) (POSP-E3)
          Length = 527

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 234 PSGHPS*SRADSSLPPSPTQT 296
           P GHPS +  D S+PP P QT
Sbjct: 481 PVGHPSVTPGDMSVPPVPIQT 501

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>BIR1_SCHPO (O14064) Protein bir1 (Chromosome segregation protein cut17)|
          Length = 997

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = -2

Query: 285 EKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRDGDK 142
           EKEA   L + +K ++K+ + + +   DA PD +    +R S+++G +
Sbjct: 779 EKEANHELENIEKIEEKLTEVDKVSLSDAFPD-QEIKNSRTSVQNGTR 825

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>Y637_METTH (O26734) UPF0235 protein MTH637|
          Length = 104

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 11  QVEIKVHQPPKKSEVQNQNIR*RKKTFHR 97
           ++E+K+H PP+K +   + I+   +TF R
Sbjct: 38  RIEVKIHSPPQKGKANREIIKEFSETFGR 66

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>HUB1_SCHPO (O94650) Ubiquitin-like modifier hub1|
          Length = 73

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 100 LKLVPDNLEGHLMRLVAIPEGEPGTKITFKVWDSIY 207
           +K +PD+  G   +LVA   G    +I  K W S++
Sbjct: 16  VKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVF 51

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>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)|
            (ATP-dependent helicase xnp-1) (X-linked nuclear protein
            1)
          Length = 1359

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = -2

Query: 384  DISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAI 205
            D  K  +   DD+  +++KK   K    +    +K    N  D  ++D +  DT +    
Sbjct: 843  DSGKSVVLSSDDEGSSKKKKNGNKPEIKKTAPQKKRKFLNSDDEDEEDGE--DTAMAILQ 900

Query: 204  DAVPDLKSYLGARFSLRDGDKPHEMT 127
            D +   K   G    LRD D P E T
Sbjct: 901  DGIRQSKRLAGEEADLRDTDTPPEYT 926



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -2

Query: 354 DDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLK 184
           D+K   + KK   KK++ E  ESE E  K +   KK  +KV+  E  ++ D  P+ K
Sbjct: 189 DEKPSKKSKKGLKKKAKSES-ESESEDEKEVKKSKKKSKKVVKKE-SESEDEAPEKK 243

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>ATPF_BUCAI (P57120) ATP synthase B chain (EC 3.6.3.14)|
          Length = 161

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = -2

Query: 336 REKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLKS 181
           +E  T AKK+  EL+  EK+  +N+ D K+    ++++   + +  + D ++
Sbjct: 41  KESLTNAKKARDELYILEKKIHQNIIDAKQKASNILNSANKQKVSILEDARN 92

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>PHF20_HUMAN (Q9BVI0) PHD finger protein 20 (Hepatocellular carcinoma-associated|
           antigen 58) (Glioma-expressed antigen 2) (Transcription
           factor TZP) (Novel zinc finger protein)
          Length = 1012

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = -2

Query: 372 VNMQKF-DDKYFAREKKTRAKKSEGELFESE--KEATKNLPDFKKDDQKVI 229
           VN++K  +DK    EK+ +    EG+L  SE  K + K+LP  +K+D++ I
Sbjct: 174 VNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENI 224

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>YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic|
           region
          Length = 738

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 339 AREKKTRAKKSEGELFESEKEATKNLPDFKKDDQK 235
           A  K    KK+E  L E+  E  K + D KKDDQK
Sbjct: 248 ATPKPKAVKKTESPL-ENVAELKKEISDIKKDDQK 281

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>SYF2_DEBHA (Q6BVE0) Pre-mRNA-splicing factor SYF2|
          Length = 231

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -2

Query: 402 STSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDT 223
           S STR+ +S   + K   +   R+K+   K ++ ELF+  K+      ++KK +QK ++ 
Sbjct: 21  SGSTRVSVSD-RLAKL--QRLKRKKQESEKLNKQELFQDYKQQKLKSIEYKKIEQKKLNA 77

Query: 222 EL 217
           EL
Sbjct: 78  EL 79

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>GGLO_PIG (Q8HXW0) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)|
           (L-gulono-gamma-lactone oxidase) (GLO)
          Length = 439

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 61  PEHTLEKKDFPQILKLVPDNLEGHLMR 141
           P+  L++  FP  LK V DNL+ HL +
Sbjct: 185 PQFHLQETTFPSTLKEVLDNLDSHLKK 211

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>GGLO_BOVIN (Q3ZC33) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)|
           (L-gulono-gamma-lactone oxidase) (GLO)
          Length = 439

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 61  PEHTLEKKDFPQILKLVPDNLEGHLMR 141
           P+  L++  FP  LK V DNL+ HL +
Sbjct: 185 PQFHLQETTFPSTLKEVLDNLDSHLKK 211

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>ENPL_CATRO (P35016) Endoplasmin homolog precursor (GRP94 homolog)|
          Length = 817

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 354 DDKYFAREKKTRAKKSE-GELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAV 196
           DD     + K+ +  SE GE  E+EKE  +  P  KK  +   + EL+  + A+
Sbjct: 298 DDSSDDEDNKSESSSSEEGEEEETEKEEDEKKPKTKKVKETTYEWELLNDMKAI 351

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>T1RX_MYCPN (P75431) Putative type I restriction enzyme MpnORFDP R protein part|
           1 (EC 3.1.21.3) (MpnORFDAP) (H91_orf376)
          Length = 376

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -2

Query: 405 ISTSTRLDISKVNMQKFDD---KYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQK 235
           I T+  + +++  + +F +   K F +EK     K+EG+L E  K+  K   +  K  +K
Sbjct: 231 IRTNPEIQVNEDILNEFIEDLGKSFEKEKLEEVWKTEGKLRECLKDFCKKKEESNK--KK 288

Query: 234 VIDTELIKAI 205
           +I+  L+K +
Sbjct: 289 IINDFLVKGV 298

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>RAD50_SULSO (Q97WH0) DNA double-strand break repair rad50 ATPase|
          Length = 864

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 336 REKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTE-LIKAIDAVPDLKSYLGAR 166
           +EK+ R  + EGEL   EK+  +        + ++ D E +I AI+ +  ++S LG R
Sbjct: 652 KEKENRKSRIEGELESLEKDIEEISNRIANYELQLKDREKIINAINKLEKIRSALGER 709

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>NAR4_PANTR (Q95NE0) Ecto-ADP-ribosyltransferase 4 precursor (EC 2.4.2.31)|
           (NAD(P)(+)--arginine ADP-ribosyltransferase 4)
           (Mono(ADP-ribosyl)transferase 4) (Dombrock molecule 1)
          Length = 314

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 357 FDDKYFAREKKTRAKKSEGELFESEKEATKN 265
           FDD+Y    K+   K ++G+ F  + EA KN
Sbjct: 62  FDDQYQGCSKQVMEKLTQGDYFTKDIEAQKN 92

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>NAR4_HUMAN (Q93070) Ecto-ADP-ribosyltransferase 4 precursor (EC 2.4.2.31)|
           (NAD(P)(+)--arginine ADP-ribosyltransferase 4)
           (Mono(ADP-ribosyl)transferase 4) (Dombrock blood group
           carrier molecule) (CD297 antigen)
          Length = 314

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 357 FDDKYFAREKKTRAKKSEGELFESEKEATKN 265
           FDD+Y    K+   K ++G+ F  + EA KN
Sbjct: 62  FDDQYQGCSKQVMEKLTQGDYFTKDIEAQKN 92

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>SYI_CORJK (Q4JW85) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1092

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 279 EATKNLPDFKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRDGDK 142
           E + +L DF K +    D EL+ A+DAV  + S   A  SLR   K
Sbjct: 836 ERSVHLADFPKSENLPADAELVTAMDAVRAVSS---ATSSLRKAHK 878

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>VAT1_BRARE (Q8JFV8) Synaptic vesicle membrane protein VAT-1 homolog (EC|
           1.-.-.-)
          Length = 484

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 384 DISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQK 235
           D  K + +K DDK    +KK  AKK        EK+  K   + KKDD+K
Sbjct: 429 DDKKKDDKKKDDKKKEDKKKDEAKK-------EEKKDEKKKEEAKKDDKK 471

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>Y741_STAAC (Q5HHY7) UPF0178 protein SACOL0741|
          Length = 152

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 270 KNLPDFKKDDQKVIDTELIKAIDAVPDL 187
           K  P F K DQKV +  L+K I  + +L
Sbjct: 124 KGPPPFTKQDQKVFEQSLLKVIHRIKEL 151

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>Y681_STAAM (P67336) UPF0178 protein SAV0681|
          Length = 152

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 270 KNLPDFKKDDQKVIDTELIKAIDAVPDL 187
           K  P F K DQKV +  L+K I  + +L
Sbjct: 124 KGPPPFTKQDQKVFEQSLLKVIHRIKEL 151

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>Y646_STAAS (Q6GBE9) UPF0178 protein SAS0646|
          Length = 152

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 270 KNLPDFKKDDQKVIDTELIKAIDAVPDL 187
           K  P F K DQKV +  L+K I  + +L
Sbjct: 124 KGPPPFTKQDQKVFEQSLLKVIHRIKEL 151

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>Y643_STAAW (Q8NXQ5) UPF0178 protein MW0643|
          Length = 152

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 270 KNLPDFKKDDQKVIDTELIKAIDAVPDL 187
           K  P F K DQKV +  L+K I  + +L
Sbjct: 124 KGPPPFTKQDQKVFEQSLLKVIHRIKEL 151

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>Y636_STAAN (P67337) UPF0178 protein SA0636|
          Length = 152

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 270 KNLPDFKKDDQKVIDTELIKAIDAVPDL 187
           K  P F K DQKV +  L+K I  + +L
Sbjct: 124 KGPPPFTKQDQKVFEQSLLKVIHRIKEL 151

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>TNNI3_HORSE (Q5PYI0) Troponin I, cardiac muscle (Cardiac troponin I)|
          Length = 204

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -2

Query: 387 LDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 226
           L+++ +  ++  D    R+   R  K + E ++ E + TKN+ +    +QK+ D
Sbjct: 77  LELAGLGFEELQD--LCRQLHARVDKVDEERYDVEAKVTKNITEIADLNQKIFD 128

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>BRE1A_MOUSE (Q5DTM8) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 973

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 336 REKKTRAKKSEGELFESEKE--ATKNLPDFKKDDQKVIDTELIKAI 205
           REK+   ++ + +L ESEKE  + K+    K DD +  + E+IK +
Sbjct: 582 REKEKEREREKQKLKESEKERDSVKDKEKGKHDDGRKKEAEIIKQL 627

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>Y1420_CLOAB (Q97J66) Protein CAC1420|
          Length = 468

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/83 (14%), Positives = 38/83 (45%)
 Frame = -2

Query: 399 TSTRLDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTE 220
           TS   ++ ++   +++ K   ++   +  +     + +  EA + +PD+  ++ + +   
Sbjct: 277 TSKLKELERIRKDEYESKKQEKDPYVKLARESLTQYLTTGEAIEEIPDYVTEEMRDLKRG 336

Query: 219 LIKAIDAVPDLKSYLGARFSLRD 151
           +  ++    DL+  +G  F + D
Sbjct: 337 VFVSLKKFGDLRGCIGTIFPVTD 359

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>UBL5_DROME (Q9V998) Ubiquitin-like protein 5|
          Length = 73

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 100 LKLVPDNLEGHLMRLVAIPEGEPGTKITFKVWDSIY 207
           +K  PD+  G L +L+A   G    KI  K W +I+
Sbjct: 16  VKCNPDDTIGDLKKLIAAQTGTKHEKIVLKKWYTIF 51

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>BRCA2_HUMAN (P51587) Breast cancer type 2 susceptibility protein (Fanconi|
           anemia group D1 protein)
          Length = 3418

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 336 REKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLK 184
           +E    + K +G  +ES+ E TKN+P  K  D   ++ E  K ++ +P  K
Sbjct: 789 KESYKMSDKLKGNNYESDVELTKNIPMEKNQDVCALN-ENYKNVELLPPEK 838

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>ERD2_SCHPO (O94270) ER lumen protein retaining receptor|
          Length = 212

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 85  LFSLAYVLVLYF*FFWRLVNLYFYLLNI 2
           LF L YV   Y   FWR  +LY++L+ I
Sbjct: 39  LFLLVYV-TRYLNLFWRYKSLYYFLMRI 65

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>BRE1A_HUMAN (Q5VTR2) Ubiquitin-protein ligase BRE1A (EC 6.3.2.-) (BRE1-A) (RING|
           finger protein 20)
          Length = 975

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 336 REKKTRAKKSEGELFESEKE--ATKNLPDFKKDDQKVIDTELIKAI 205
           REK+   ++ + +L ESEKE  + K+    K DD +  + E+IK +
Sbjct: 584 REKEKEREREKQKLKESEKERDSAKDKEKGKHDDGRKKEAEIIKQL 629

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>RS5_MYCPU (Q98PZ9) 30S ribosomal protein S5|
          Length = 229

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -2

Query: 381 ISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTE 220
           + K   +KFD   F +E+K+         ++ E +ATK +   KKDD+  + TE
Sbjct: 1   MEKEKNKKFDSSSFKKEEKSNLA------WKKEAKATKEI--IKKDDEMEVVTE 46

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>DRL36_ARATH (Q8VZC7) Probable disease resistance protein At5g45510|
          Length = 1202

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 351 DKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAID 202
           +KY   +K+   KK E +  + EKEA + L    + ++K++D    KA D
Sbjct: 126 EKYLLEKKEAVVKKLEDDKKKKEKEAAEKL----EAEKKLVDPAAKKAKD 171

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>LCP5_YEAST (P40079) U3 small nucleolar ribonucleoprotein protein LCP5|
          Length = 357

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 357 FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDF 253
           F+D++ ARE K R+ KS  +  E     + + PD+
Sbjct: 224 FEDRFDAREHKDRSNKSRMQAMEEYIRESSDQPDW 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,173,169
Number of Sequences: 219361
Number of extensions: 856220
Number of successful extensions: 2253
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 2184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2236
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result