Clone Information

BLAST Search Result

Clone Name	rbags7m03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY846820.1\| Triticum aestivum ribosomal protein L6 mRNA, comp...	422	e-115
2	dbj\|AK072777.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	240	3e-60
3	ref\|XM_466485.1\| Oryza sativa (japonica cultivar-group), mRNA	214	2e-52
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
5	dbj\|AP005874.3\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
6	dbj\|AP005640.2\| Oryza sativa (japonica cultivar-group) genomic D...	188	1e-44
7	gb\|AY103559.1\| Zea mays PCO112591 mRNA sequence	133	5e-28
8	ref\|XM_472843.1\| Oryza sativa (japonica cultivar-group), predic...	117	3e-23
9	dbj\|AK067896.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	117	3e-23
10	emb\|AL606447.3\|OSJN00011 Oryza sativa genomic DNA, chromosome 4,...	74	4e-10
11	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	74	4e-10
12	emb\|AL121581.41\|HS1022E24 Human DNA sequence from clone RP5-1022...	44	0.35
13	ref\|XM_363819.1\| Magnaporthe grisea 70-15 hypothetical protein (...	42	1.4
14	gb\|AC073073.2\| Homo sapiens BAC clone RP11-251G23 from 7, comple...	42	1.4
15	gb\|AC074397.7\| Homo sapiens BAC clone RP11-598O8 from 7, complet...	42	1.4
16	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
17	dbj\|AP003541.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
18	dbj\|AP004737.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.4
19	gb\|AC022675.7\| Mus musculus chromosome 1, clone RP23-59N15, comp...	40	5.4
20	gb\|AC098742.4\| Mus musculus BAC clone RP23-122N2 from 14, comple...	40	5.4
21	gb\|AC146748.16\| Medicago truncatula clone mth2-65k8, complete se...	40	5.4
22	emb\|AL590677.7\| Human DNA sequence from clone RP11-214D15 on chr...	40	5.4
23	emb\|AL355485.9\| Human DNA sequence from clone RP11-240M20 on chr...	40	5.4
24	dbj\|AK094601.1\| Homo sapiens cDNA FLJ37282 fis, clone BRAMY2013216	40	5.4
25	gb\|AC017063.8\| Homo sapiens BAC clone RP11-354H17 from 4, comple...	40	5.4
26	gb\|AC004671.1\| Homo sapiens 12p13.3 PAC RPCI3-340I3 (Roswell Par...	40	5.4
27	gb\|AC108157.3\| Homo sapiens BAC clone RP11-580P21 from 4, comple...	40	5.4
28	gb\|AC097659.3\| Homo sapiens BAC clone RP11-408C24 from 4, comple...	40	5.4
29	gb\|AC074349.6\| Homo sapiens BAC clone RP11-703G6 from 4, complet...	40	5.4
30	gb\|AC069200.6\| Homo sapiens BAC clone RP11-177J6 from 4, complet...	40	5.4
31	gb\|AC026692.5\| Homo sapiens chromosome 5 clone CTC-257L10, compl...	40	5.4
32	gb\|AC035147.4\| Homo sapiens chromosome 5 clone CTD-2309M13, comp...	40	5.4
33	gb\|AE015928.1\| Bacteroides thetaiotaomicron VPI-5482, complete g...	40	5.4
34	gb\|AC068282.8\| Homo sapiens BAC clone RP11-314L11 from 2, comple...	40	5.4
35	gb\|AC044787.6\|AC044787 Homo sapiens chromosome 15 clone CTD-2270...	40	5.4
36	gb\|AC017006.4\| Homo sapiens BAC clone RP11-110G2 from 2, complet...	40	5.4
37	emb\|X69378.1\|MCYL16 M.crystallinum mRNA for ribosomal protein YL16	40	5.4
38	gb\|AC154243.2\| Mus musculus BAC clone RP24-173F3 from 14, comple...	40	5.4
39	gb\|AC004047.1\|AC004047 Homo sapiens chromosome 4 clone B150J4 ma...	40	5.4
40	gb\|AC005394.1\|AC005394 Homo sapiens chromosome 19, cosmid F8518,...	40	5.4
41	emb\|AL354819.15\| Human DNA sequence from clone RP11-7B3 on chrom...	40	5.4
42	gb\|AC161427.4\| Gallus gallus BAC clone CH261-60M14 from chromoso...	40	5.4
43	emb\|AL365314.16\| Mouse DNA sequence from clone RP23-106N23 on ch...	40	5.4

>gb|AY846820.1| Triticum aestivum ribosomal protein L6 mRNA, complete cds
          Length = 686

 Score =  422 bits (213), Expect = e-115
 Identities = 267/285 (93%)
 Strand = Plus / Minus

                                                                       
Query: 117 taacttagaaggtcatctcatgcggcttgtcgccatccctgagggagaaccgggcaccaa 176
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taacttaaaaggtcatctcatgcggcttgtcgccatccctgagggagaaccgggcaccaa 624

                                                                       
Query: 177 gataacttttaaggtctgggacagcatctatagccttgattaactcagtgtcaatgacct 236
           ||||| |||||||||||||||| ||||| ||||||||||| ||||||| |||||||||||
Sbjct: 623 gataatttttaaggtctgggacggcatcgatagccttgatcaactcagcgtcaatgacct 564

                                                                       
Query: 237 tctggtcatccttcttgaagtcgggcagattcttcgttgcctccttctccgactcaaaca 296
           |||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||| |
Sbjct: 563 tctggtcatccttcttgaagtctggcaaattcttggttgcctccttatccgactcaaata 504

                                                                       
Query: 297 gctcgccctcagacttctttgccctagtcttcttctccctagcaaagtacttgtcatcaa 356
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 503 gctcgccctcagtcttctttgccctagtcttcttctccctagcgaagtacttgtcatcaa 444

                                                        
Query: 357 acttttgcatattaaccttggagatgtcgagccttgtggatgtgg 401
           |||| |||| ||||||||| |||||||||| | ||||||||||||
Sbjct: 443 acttctgcacattaaccttagagatgtcgacctttgtggatgtgg 399

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>dbj|AK072777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139B06, full
           insert sequence
          Length = 1030

 Score =  240 bits (121), Expect = 3e-60
 Identities = 242/281 (86%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 80  aaaaagactttccacagatcttgaaacttgtaccagataacttagaaggtcatctcatgc 139
           |||||||||| || |||| |||||||||||||||   |||||||||| ||||||||||| 
Sbjct: 770 aaaaagactt-cctcagaacttgaaacttgtaccgactaacttagaatgtcatctcatgg 712

                                                                       
Query: 140 ggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaaggtctgggaca 199
           ||||||||||| |||||||| ||||||||||||||||||||   ||| ||||||||||||
Sbjct: 711 ggcttgtcgccgtccctgagagagaaccgggcaccaagataggatttcaggtctgggaca 652

                                                                       
Query: 200 gcatctatagccttgattaactcagtgtcaatgaccttctggtcatccttcttgaagtcg 259
            | || ||||||||||| |||||||  || |   ||||||||||||||||||||||||||
Sbjct: 651 acctcgatagccttgatcaactcagcatccacagccttctggtcatccttcttgaagtcg 592

                                                                       
Query: 260 ggcagattcttcgttgcctccttctccgactcaaacagctcgccctcagacttctttgcc 319
           ||||||||||| |||||||||||||| | |||||| || || ||||| | |||||| |||
Sbjct: 591 ggcagattcttggttgcctccttctctgtctcaaaaagttcaccctcggtcttcttggcc 532

                                                    
Query: 320 ctagtcttcttctccctagcaaagtacttgtcatcaaactt 360
            | | |||||| ||||  |||||||||||||||||||||||
Sbjct: 531 tttgccttcttgtcccgggcaaagtacttgtcatcaaactt 491

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>ref|XM_466485.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  214 bits (108), Expect = 2e-52
 Identities = 207/240 (86%)
 Strand = Plus / Minus

                                                                       
Query: 121 ttagaaggtcatctcatgcggcttgtcgccatccctgagggagaaccgggcaccaagata 180
           |||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 660 ttagaatgtcatctcatggggcttgtcgccgtccctgagagagaaccgggcaccaagata 601

                                                                       
Query: 181 acttttaaggtctgggacagcatctatagccttgattaactcagtgtcaatgaccttctg 240
              ||| |||||||||||| | || ||||||||||| |||||||  || |   |||||||
Sbjct: 600 ggatttcaggtctgggacaacctcgatagccttgatcaactcagcatccacagccttctg 541

                                                                       
Query: 241 gtcatccttcttgaagtcgggcagattcttcgttgcctccttctccgactcaaacagctc 300
           |||||||||||||||||||||||||||||| |||||||||||||| | |||||| || ||
Sbjct: 540 gtcatccttcttgaagtcgggcagattcttggttgcctccttctctgtctcaaaaagttc 481

                                                                       
Query: 301 gccctcagacttctttgccctagtcttcttctccctagcaaagtacttgtcatcaaactt 360
            ||||| | |||||| ||| | | |||||| ||||  |||||||||||||||||||||||
Sbjct: 480 accctcggtcttcttggcctttgccttcttgtcccgggcaaagtacttgtcatcaaactt 421

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  188 bits (95), Expect = 1e-44
 Identities = 174/199 (87%), Gaps = 1/199 (0%)
 Strand = Plus / Plus

                                                                            
Query: 80       aaaaagactttccacagatcttgaaacttgtaccagataacttagaaggtcatctcatgc 139
                |||||||||| || |||| |||||||||||||||   |||||||||| ||||||||||| 
Sbjct: 22901753 aaaaagactt-cctcagaacttgaaacttgtaccgactaacttagaatgtcatctcatgg 22901811

                                                                            
Query: 140      ggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaaggtctgggaca 199
                ||||||||||| |||||||| ||||||||||||||||||||   ||| ||||||||||||
Sbjct: 22901812 ggcttgtcgccgtccctgagagagaaccgggcaccaagataggatttcaggtctgggaca 22901871

                                                                            
Query: 200      gcatctatagccttgattaactcagtgtcaatgaccttctggtcatccttcttgaagtcg 259
                 | || ||||||||||| |||||||  || |   ||||||||||||||||||||||||||
Sbjct: 22901872 acctcgatagccttgatcaactcagcatccacagccttctggtcatccttcttgaagtcg 22901931

                                   
Query: 260      ggcagattcttcgttgcct 278
                ||||||||||| |||||||
Sbjct: 22901932 ggcagattcttggttgcct 22901950



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                            
Query: 276      cctccttctccgactcaaacagctcgccctcagacttctttgccctagtcttcttctccc 335
                |||||||||| | |||||| || || ||||| | |||||| ||| | | |||||| ||||
Sbjct: 22902042 cctccttctctgtctcaaaaagttcaccctcggtcttcttggcctttgccttcttgtccc 22902101

                                         
Query: 336      tagcaaagtacttgtcatcaaactt 360
                  |||||||||||||||||||||||
Sbjct: 22902102 gggcaaagtacttgtcatcaaactt 22902126

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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score =  188 bits (95), Expect = 1e-44
 Identities = 174/199 (87%), Gaps = 1/199 (0%)
 Strand = Plus / Plus

                                                                         
Query: 80    aaaaagactttccacagatcttgaaacttgtaccagataacttagaaggtcatctcatgc 139
             |||||||||| || |||| |||||||||||||||   |||||||||| ||||||||||| 
Sbjct: 21555 aaaaagactt-cctcagaacttgaaacttgtaccgactaacttagaatgtcatctcatgg 21613

                                                                         
Query: 140   ggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaaggtctgggaca 199
             ||||||||||| |||||||| ||||||||||||||||||||   ||| ||||||||||||
Sbjct: 21614 ggcttgtcgccgtccctgagagagaaccgggcaccaagataggatttcaggtctgggaca 21673

                                                                         
Query: 200   gcatctatagccttgattaactcagtgtcaatgaccttctggtcatccttcttgaagtcg 259
              | || ||||||||||| |||||||  || |   ||||||||||||||||||||||||||
Sbjct: 21674 acctcgatagccttgatcaactcagcatccacagccttctggtcatccttcttgaagtcg 21733

                                
Query: 260   ggcagattcttcgttgcct 278
             ||||||||||| |||||||
Sbjct: 21734 ggcagattcttggttgcct 21752



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                         
Query: 276   cctccttctccgactcaaacagctcgccctcagacttctttgccctagtcttcttctccc 335
             |||||||||| | |||||| || || ||||| | |||||| ||| | | |||||| ||||
Sbjct: 21844 cctccttctctgtctcaaaaagttcaccctcggtcttcttggcctttgccttcttgtccc 21903

                                      
Query: 336   tagcaaagtacttgtcatcaaactt 360
               |||||||||||||||||||||||
Sbjct: 21904 gggcaaagtacttgtcatcaaactt 21928

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>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0006O15
          Length = 139723

 Score =  188 bits (95), Expect = 1e-44
 Identities = 174/199 (87%), Gaps = 1/199 (0%)
 Strand = Plus / Plus

                                                                          
Query: 80     aaaaagactttccacagatcttgaaacttgtaccagataacttagaaggtcatctcatgc 139
              |||||||||| || |||| |||||||||||||||   |||||||||| ||||||||||| 
Sbjct: 135091 aaaaagactt-cctcagaacttgaaacttgtaccgactaacttagaatgtcatctcatgg 135149

                                                                          
Query: 140    ggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaaggtctgggaca 199
              ||||||||||| |||||||| ||||||||||||||||||||   ||| ||||||||||||
Sbjct: 135150 ggcttgtcgccgtccctgagagagaaccgggcaccaagataggatttcaggtctgggaca 135209

                                                                          
Query: 200    gcatctatagccttgattaactcagtgtcaatgaccttctggtcatccttcttgaagtcg 259
               | || ||||||||||| |||||||  || |   ||||||||||||||||||||||||||
Sbjct: 135210 acctcgatagccttgatcaactcagcatccacagccttctggtcatccttcttgaagtcg 135269

                                 
Query: 260    ggcagattcttcgttgcct 278
              ||||||||||| |||||||
Sbjct: 135270 ggcagattcttggttgcct 135288



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                          
Query: 276    cctccttctccgactcaaacagctcgccctcagacttctttgccctagtcttcttctccc 335
              |||||||||| | |||||| || || ||||| | |||||| ||| | | |||||| ||||
Sbjct: 135380 cctccttctctgtctcaaaaagttcaccctcggtcttcttggcctttgccttcttgtccc 135439

                                       
Query: 336    tagcaaagtacttgtcatcaaactt 360
                |||||||||||||||||||||||
Sbjct: 135440 gggcaaagtacttgtcatcaaactt 135464

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>gb|AY103559.1| Zea mays PCO112591 mRNA sequence
          Length = 1361

 Score =  133 bits (67), Expect = 5e-28
 Identities = 190/231 (82%)
 Strand = Plus / Minus

                                                                        
Query: 130  catctcatgcggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaag 189
            ||||||||| |||||||| ||||||||||| ||||||||||| ||||||||  |||| ||
Sbjct: 1055 catctcatggggcttgtcaccatccctgagagagaaccgggcgccaagataggttttcag 996

                                                                        
Query: 190  gtctgggacagcatctatagccttgattaactcagtgtcaatgaccttctggtcatcctt 249
             ||  ||||||| || ||||||||||| |   |||  || |   ||||||||||||||||
Sbjct: 995  ctccaggacagcctcgatagccttgatcagagcagaatccacagccttctggtcatcctt 936

                                                                        
Query: 250  cttgaagtcgggcagattcttcgttgcctccttctccgactcaaacagctcgccctcaga 309
            ||||||||| |||||   ||| | ||||||||| || | |||||| ||||||||||| | 
Sbjct: 935  cttgaagtcaggcagtgacttggatgcctccttttctgtctcaaaaagctcgccctcggt 876

                                                               
Query: 310  cttctttgccctagtcttcttctccctagcaaagtacttgtcatcaaactt 360
            ||||||  || |   |||||||||||| |||||||||||||||||||||||
Sbjct: 875  cttcttcaccttctgcttcttctccctggcaaagtacttgtcatcaaactt 825

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>ref|XM_472843.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 669

 Score =  117 bits (59), Expect = 3e-23
 Identities = 188/231 (81%)
 Strand = Plus / Minus

                                                                       
Query: 130 catctcatgcggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaag 189
           |||||| || ||||||||||| |||||||| || ||||| |||||||| ||| |||| ||
Sbjct: 660 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 601

                                                                       
Query: 190 gtctgggacagcatctatagccttgattaactcagtgtcaatgaccttctggtcatcctt 249
            || |||||||| || ||||| ||||| ||||| |  || |  || |||||||| |||||
Sbjct: 600 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 541

                                                                       
Query: 250 cttgaagtcgggcagattcttcgttgcctccttctccgactcaaacagctcgccctcaga 309
            ||||| || ||||| ||||| |||||||||||||| | |||||| || || ||||| | 
Sbjct: 540 tttgaactccggcaggttcttggttgcctccttctcagtctcaaaaagttcaccctcggt 481

                                                              
Query: 310 cttctttgccctagtcttcttctccctagcaaagtacttgtcatcaaactt 360
           |||||| ||| |   |||||| |||||||  ||||||||||||||||||||
Sbjct: 480 cttcttcgccttctgcttcttgtccctagagaagtacttgtcatcaaactt 430

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>dbj|AK067896.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123D20, full
           insert sequence
          Length = 933

 Score =  117 bits (59), Expect = 3e-23
 Identities = 188/231 (81%)
 Strand = Plus / Minus

                                                                       
Query: 130 catctcatgcggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaag 189
           |||||| || ||||||||||| |||||||| || ||||| |||||||| ||| |||| ||
Sbjct: 714 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 655

                                                                       
Query: 190 gtctgggacagcatctatagccttgattaactcagtgtcaatgaccttctggtcatcctt 249
            || |||||||| || ||||| ||||| ||||| |  || |  || |||||||| |||||
Sbjct: 654 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 595

                                                                       
Query: 250 cttgaagtcgggcagattcttcgttgcctccttctccgactcaaacagctcgccctcaga 309
            ||||| || ||||| ||||| |||||||||||||| | |||||| || || ||||| | 
Sbjct: 594 tttgaactccggcaggttcttggttgcctccttctcagtctcaaaaagttcaccctcggt 535

                                                              
Query: 310 cttctttgccctagtcttcttctccctagcaaagtacttgtcatcaaactt 360
           |||||| ||| |   |||||| |||||||  ||||||||||||||||||||
Sbjct: 534 cttcttcgccttctgcttcttgtccctagagaagtacttgtcatcaaactt 484

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>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Plus

                                                                         
Query: 130   catctcatgcggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaag 189
             |||||| || ||||||||||| |||||||| || ||||| |||||||| ||| |||| ||
Sbjct: 79067 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 79126

                                                                         
Query: 190   gtctgggacagcatctatagccttgattaactcagtgtcaatgaccttctggtcatcctt 249
              || |||||||| || ||||| ||||| ||||| |  || |  || |||||||| |||||
Sbjct: 79127 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 79186

                                          
Query: 250   cttgaagtcgggcagattcttcgttgcct 278
              ||||| || ||||| ||||| |||||||
Sbjct: 79187 tttgaactccggcaggttcttggttgcct 79215



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                         
Query: 276   cctccttctccgactcaaacagctcgccctcagacttctttgccctagtcttcttctccc 335
             |||||||||| | |||||| || || ||||| | |||||| ||| |   |||||| ||||
Sbjct: 79304 cctccttctcagtctcaaaaagttcaccctcggtcttcttcgccttctgcttcttgtccc 79363

                                      
Query: 336   tagcaaagtacttgtcatcaaactt 360
             |||  ||||||||||||||||||||
Sbjct: 79364 tagagaagtacttgtcatcaaactt 79388

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 121/149 (81%)
 Strand = Plus / Plus

                                                                            
Query: 130      catctcatgcggcttgtcgccatccctgagggagaaccgggcaccaagataacttttaag 189
                |||||| || ||||||||||| |||||||| || ||||| |||||||| ||| |||| ||
Sbjct: 23636386 catctcgtggggcttgtcgccgtccctgagagaaaaccgcgcaccaaggtaagttttcag 23636445

                                                                            
Query: 190      gtctgggacagcatctatagccttgattaactcagtgtcaatgaccttctggtcatcctt 249
                 || |||||||| || ||||| ||||| ||||| |  || |  || |||||||| |||||
Sbjct: 23636446 atccgggacagcttcaatagctttgatcaactcggcatccacaactttctggtcctcctt 23636505

                                             
Query: 250      cttgaagtcgggcagattcttcgttgcct 278
                 ||||| || ||||| ||||| |||||||
Sbjct: 23636506 tttgaactccggcaggttcttggttgcct 23636534



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                            
Query: 276      cctccttctccgactcaaacagctcgccctcagacttctttgccctagtcttcttctccc 335
                |||||||||| | |||||| || || ||||| | |||||| ||| |   |||||| ||||
Sbjct: 23636623 cctccttctcagtctcaaaaagttcaccctcggtcttcttcgccttctgcttcttgtccc 23636682

                                         
Query: 336      tagcaaagtacttgtcatcaaactt 360
                |||  ||||||||||||||||||||
Sbjct: 23636683 tagagaagtacttgtcatcaaactt 23636707

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>emb|AL121581.41|HS1022E24 Human DNA sequence from clone RP5-1022E24 on chromosome 20 Contains the
              3' end of the OPRL1 gene for opiate receptor-like 1
              protein, the GPR8 gene encoding a G protein-coupled
              receptor, the KIAA0835 gene encoding a protein similar to
              the myelin transcription factor 1 (MYT1), a novel gene, 7
              CpG islands, ESTs, STSs and GSSs, complete sequence
          Length = 179888

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 225    tgtcaatgaccttctggtcatccttc 250
              |||||||||||||||||||| |||||
Sbjct: 127616 tgtcaatgaccttctggtcagccttc 127641

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>ref|XM_363819.1| Magnaporthe grisea 70-15 hypothetical protein (MG01745.4) partial
           mRNA
          Length = 1389

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 334 cctagcaaagtacttgtcatc 354
           |||||||||||||||||||||
Sbjct: 798 cctagcaaagtacttgtcatc 778

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>gb|AC073073.2| Homo sapiens BAC clone RP11-251G23 from 7, complete sequence
          Length = 114414

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   ctcagtgtcaatgaccttctg 240
             |||||||||||||||||||||
Sbjct: 94051 ctcagtgtcaatgaccttctg 94071

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>gb|AC074397.7| Homo sapiens BAC clone RP11-598O8 from 7, complete sequence
          Length = 114576

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 356   aacttttgcatattaaccttg 376
             |||||||||||||||||||||
Sbjct: 52941 aacttttgcatattaaccttg 52921

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 314      tttgccctagtcttcttctccctag 338
                |||||||| ||||||||||||||||
Sbjct: 24939950 tttgcccttgtcttcttctccctag 24939926

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>dbj|AP003541.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0530H05
          Length = 145952

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 314   tttgccctagtcttcttctccctag 338
             |||||||| ||||||||||||||||
Sbjct: 34505 tttgcccttgtcttcttctccctag 34481

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>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0072A21
          Length = 158287

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 314    tttgccctagtcttcttctccctag 338
              |||||||| ||||||||||||||||
Sbjct: 151033 tttgcccttgtcttcttctccctag 151009

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>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    ccctcagacttctttgccct 321
              ||||||||||||||||||||
Sbjct: 146509 ccctcagacttctttgccct 146528

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>gb|AC098742.4| Mus musculus BAC clone RP23-122N2 from 14, complete sequence
          Length = 218683

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    agtcttcttctccctagcaa 341
              ||||||||||||||||||||
Sbjct: 217214 agtcttcttctccctagcaa 217195

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>gb|AC146748.16| Medicago truncatula clone mth2-65k8, complete sequence
          Length = 113744

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   aagtacttgtcatcaaactt 360
             ||||||||||||||||||||
Sbjct: 68034 aagtacttgtcatcaaactt 68015

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>emb|AL590677.7| Human DNA sequence from clone RP11-214D15 on chromosome 10 Contains the
              5' end of the gene for a novel protein (FLJ40283), a novel
              gene and two CpG islands, complete sequence
          Length = 127714

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    acttttgcatattaaccttg 376
              ||||||||||||||||||||
Sbjct: 110712 acttttgcatattaaccttg 110693

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>emb|AL355485.9| Human DNA sequence from clone RP11-240M20 on chromosome 13, complete
              sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    acttttgcatattaaccttg 376
              ||||||||||||||||||||
Sbjct: 114492 acttttgcatattaaccttg 114473

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>dbj|AK094601.1| Homo sapiens cDNA FLJ37282 fis, clone BRAMY2013216
          Length = 2669

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  acttttgcatattaaccttg 376
            ||||||||||||||||||||
Sbjct: 2530 acttttgcatattaaccttg 2549

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>gb|AC017063.8| Homo sapiens BAC clone RP11-354H17 from 4, complete sequence
          Length = 193092

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 1      aaatatttaacaggtagaaataaa 24
              |||||| |||||||||||||||||
Sbjct: 147063 aaatatgtaacaggtagaaataaa 147040

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>gb|AC004671.1| Homo sapiens 12p13.3 PAC RPCI3-340I3 (Roswell Park Cancer Institute
             Human PAC Library) complete sequence
          Length = 141266

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   aaagtacttgtcatcaaact 359
             ||||||||||||||||||||
Sbjct: 99726 aaagtacttgtcatcaaact 99707

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>gb|AC108157.3| Homo sapiens BAC clone RP11-580P21 from 4, complete sequence
          Length = 167001

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   acttttgcatattaaccttg 376
             ||||||||||||||||||||
Sbjct: 50763 acttttgcatattaaccttg 50782

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>gb|AC097659.3| Homo sapiens BAC clone RP11-408C24 from 4, complete sequence
          Length = 131944

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    ccacagatcttgaaacttgt 110
             ||||||||||||||||||||
Sbjct: 10651 ccacagatcttgaaacttgt 10670

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>gb|AC074349.6| Homo sapiens BAC clone RP11-703G6 from 4, complete sequence
          Length = 176467

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   acttttgcatattaaccttg 376
             ||||||||||||||||||||
Sbjct: 81321 acttttgcatattaaccttg 81340

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>gb|AC069200.6| Homo sapiens BAC clone RP11-177J6 from 4, complete sequence
          Length = 148930

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    acttttgcatattaaccttg 376
              ||||||||||||||||||||
Sbjct: 146643 acttttgcatattaaccttg 146662

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>gb|AC026692.5| Homo sapiens chromosome 5 clone CTC-257L10, complete sequence
          Length = 139377

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    acttttgcatattaaccttg 376
              ||||||||||||||||||||
Sbjct: 125269 acttttgcatattaaccttg 125250

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>gb|AC035147.4| Homo sapiens chromosome 5 clone CTD-2309M13, complete sequence
          Length = 104940

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   acttttgcatattaaccttg 376
             ||||||||||||||||||||
Sbjct: 41370 acttttgcatattaaccttg 41389

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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 266     ttcttcgttgcctccttctc 285
               ||||||||||||||||||||
Sbjct: 3692721 ttcttcgttgcctccttctc 3692702

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>gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, complete sequence
          Length = 205342

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    acttttgcatattaaccttg 376
              ||||||||||||||||||||
Sbjct: 125957 acttttgcatattaaccttg 125976

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>gb|AC044787.6|AC044787 Homo sapiens chromosome 15 clone CTD-2270N23 map 15q21, complete
             sequence
          Length = 148147

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   acttttgcatattaaccttg 376
             ||||||||||||||||||||
Sbjct: 96958 acttttgcatattaaccttg 96939

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>gb|AC017006.4| Homo sapiens BAC clone RP11-110G2 from 2, complete sequence
          Length = 191953

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   acttttgcatattaaccttg 376
             ||||||||||||||||||||
Sbjct: 85108 acttttgcatattaaccttg 85127

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>emb|X69378.1|MCYL16 M.crystallinum mRNA for ribosomal protein YL16
          Length = 1015

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 341 aagtacttgtcatcaaactt 360
           ||||||||||||||||||||
Sbjct: 541 aagtacttgtcatcaaactt 522

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>gb|AC154243.2| Mus musculus BAC clone RP24-173F3 from 14, complete sequence
          Length = 152254

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   agtcttcttctccctagcaa 341
             ||||||||||||||||||||
Sbjct: 68001 agtcttcttctccctagcaa 67982

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>gb|AC004047.1|AC004047 Homo sapiens chromosome 4 clone B150J4 map 4q25, complete sequence
          Length = 134649

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   acttttgcatattaaccttg 376
             ||||||||||||||||||||
Sbjct: 59996 acttttgcatattaaccttg 60015

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>gb|AC005394.1|AC005394 Homo sapiens chromosome 19, cosmid F8518, complete sequence
          Length = 44935

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 357  acttttgcatattaaccttg 376
            ||||||||||||||||||||
Sbjct: 1571 acttttgcatattaaccttg 1590

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>emb|AL354819.15| Human DNA sequence from clone RP11-7B3 on chromosome 13 Contains the 3'
              end of the gene for a novel calx-beta domain containing
              protein similar to sea urchin ECM3, a novel gene, a
              phospholipase A2 group XII (PLA2G12) pseudogene and a novel
              KIAA0565 KIAA1074 and breast cancer antigen NY-BR-1
              containing pseudogene, complete sequence
          Length = 153149

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 357    acttttgcatattaaccttg 376
              ||||||||||||||||||||
Sbjct: 124129 acttttgcatattaaccttg 124110

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>gb|AC161427.4| Gallus gallus BAC clone CH261-60M14 from chromosome ul, complete sequence
          Length = 174770

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    accttctggtcatccttctt 252
              ||||||||||||||||||||
Sbjct: 148480 accttctggtcatccttctt 148499

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>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
             sequence
          Length = 182054

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   ccctcagacttctttgccct 321
             ||||||||||||||||||||
Sbjct: 74893 ccctcagacttctttgccct 74874


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,595,188
Number of Sequences: 3902068
Number of extensions: 3595188
Number of successful extensions: 57345
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57206
Number of HSP's gapped (non-prelim): 131
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result