ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags7l23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, p... 878 0.0
2gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransf... 757 0.0
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
4emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 98 3e-17
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 98 3e-17
6emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 98 3e-17
7emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003... 66 1e-07
8gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome... 42 1.7
9dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RI... 42 1.7
10gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosom... 42 1.7
11gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 42 1.7
12gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, compl... 40 6.8
13emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome;... 40 6.8
14gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Can... 40 6.8
15gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete se... 40 6.8
16dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 6.8
17dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 6.8
18dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 6.8
19dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin asso... 40 6.8
20gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clo... 40 6.8
21gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clo... 40 6.8
22gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clo... 40 6.8
23gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 6.8
24emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in... 40 6.8
25gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete s... 40 6.8
26gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 6.8
27dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CT... 40 6.8
28gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, com... 40 6.8
29emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 i... 40 6.8 
>gb|U43498.1|HVU43498 Hordeum vulgare 0-methyltransferase mRNA, partial cds
          Length = 983

 Score =  878 bits (443), Expect = 0.0
 Identities = 481/499 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgataganatgatanaatgaaaatngtaaatgagcacgtgagctagcagctcttattc 60
           ||||||||| || ||| |||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 951 tatgatagaaataataaaatgaaaatcataaatgagcacgtgagctagcagctcttattc 892

                                                                       
Query: 61  gggacattattcgcnnnnnnngaagtgctcctattcgggactataccactctggtacgtg 120
           ||||||||||||||       |||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gggacattattcgcaaaaaaagaagtgctcctattcgggactataccactctggtacgtg 832

                                                                       
Query: 121 gatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgc 772

                                                                       
Query: 181 caccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 caccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttg 712

                                                                       
Query: 241 ctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgctgtgagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgctgtgagag 652

                                                                       
Query: 301 acgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtcttttggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtcttttggga 592

                                                                       
Query: 361 gagcgttgtggcagttgcttantattttgacgaactcgncgncgttaagcataagcgtga 420
           ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 591 gagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcataagcgtga 532

                                                                       
Query: 421 tccactgcaagagaaccgcatctncagtggntatactctcatacatatctccagccacat 480
           ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 531 tccactgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacat 472

                              
Query: 481 gttcgactcctgnaagagg 499
           |||||||||||| ||||||
Sbjct: 471 gttcgactcctggaagagg 453
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>gb|U54767.1|HVU54767 Hordeum vulgare caffeic acid O-methyltransferase (HvCOMT) gene,
            complete cds
          Length = 5238

 Score =  757 bits (382), Expect = 0.0
 Identities = 414/429 (96%)
 Strand = Plus / Minus

                                                                        
Query: 1    tatgataganatgatanaatgaaaatngtaaatgagcacgtgagctagcagctcttattc 60
            ||||||||| || ||| |||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 4854 tatgatagaaataataaaatgaaaatcataaatgagcacgtgagctagcagctcttattc 4795

                                                                        
Query: 61   gggacattattcgcnnnnnnngaagtgctcctattcgggactataccactctggtacgtg 120
            ||||||||||||||       |||||||||||||||||||||||||||||||||||||||
Sbjct: 4794 gggacattattcgcaaaaaaagaagtgctcctattcgggactataccactctggtacgtg 4735

                                                                        
Query: 121  gatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4734 gatgctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgc 4675

                                                                        
Query: 181  caccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4674 caccggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttg 4615

                                                                        
Query: 241  ctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgctgtgagag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4614 ctcccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgctgtgagag 4555

                                                                        
Query: 301  acgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtcttttggga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4554 acgagtctgggttctccgggaggataccatccacgacgatcaccttcccgtcttttggga 4495

                                                                        
Query: 361  gagcgttgtggcagttgcttantattttgacgaactcgncgncgttaagcataagcgtga 420
            ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 4494 gagcgttgtggcagttgcttagtattttgacgaactcgtcgtcgttaagcataagcgtga 4435

                     
Query: 421  tccactgca 429
            |||||||||
Sbjct: 4434 tccactgca 4426



 Score =  123 bits (62), Expect = 6e-25
 Identities = 66/68 (97%)
 Strand = Plus / Minus

                                                                        
Query: 425  ctgcaagagaaccgcatctncagtggntatactctcatacatatctccagccacatgttc 484
            ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 3910 ctgcaagagaaccgcatctccagtgggtatactctcatacatatctccagccacatgttc 3851

                    
Query: 485  gactcctg 492
            ||||||||
Sbjct: 3850 gactcctg 3843
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 133     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 192
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374724 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374665

                                                                           
Query: 193     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 252
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374664 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374605

                                                    
Query: 253     gcacaaacatgatgatatccaaggtgaatgcatcccg 289
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374604 ggacaaacatgatcatatccatggtgaatgaatcccg 5374568



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 124     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 183
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173415 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173356

                                                                           
Query: 184     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 243
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173355 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173296

                                                                
Query: 244     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 292
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173295 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173247



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 455     actctcatacatatctccagccacatgttc 484
               ||||||||||||||||||||| | ||||||
Sbjct: 5172567 actctcatacatatctccagctatatgttc 5172538
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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                         
Query: 133   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 192
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 46791 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 46732

                                                                         
Query: 193   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 252
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 46731 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 46672

                                                  
Query: 253   gcacaaacatgatgatatccaaggtgaatgcatcccg 289
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 46671 ggacaaacatgatcatatccatggtgaatgaatcccg 46635
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Minus

                                                                           
Query: 133     tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 192
               ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 5374713 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 5374654

                                                                           
Query: 193     cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 252
               ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 5374653 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 5374594

                                                    
Query: 253     gcacaaacatgatgatatccaaggtgaatgcatcccg 289
               | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 5374593 ggacaaacatgatcatatccatggtgaatgaatcccg 5374557



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Minus

                                                                           
Query: 124     gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 183
               |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 5173397 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 5173338

                                                                           
Query: 184     cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 243
               ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 5173337 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 5173278

                                                                
Query: 244     ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 292
               |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 5173277 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 5173229



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 455     actctcatacatatctccagccacatgttc 484
               ||||||||||||||||||||| | ||||||
Sbjct: 5172549 actctcatacatatctccagctatatgttc 5172520
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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 141841

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 130/157 (82%)
 Strand = Plus / Plus

                                                                         
Query: 133   tgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccaccggtaaatc 192
             ||||||||||||| || ||||| ||||||||||||||   |   | |  ||||||||| |
Sbjct: 91084 tgaactcaagagcatagaagttcaagaatatgtaggtcgaccgaaaggtaccggtaaagc 91143

                                                                         
Query: 193   cagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctcccttgaaga 252
             ||||||  ||||| ||| | |||||||| | |||||||||||| ||| || |||||||||
Sbjct: 91144 cagcttccttggcaagctttgcaaactcttgctccgtcctctgttttcctaccttgaaga 91203

                                                  
Query: 253   gcacaaacatgatgatatccaaggtgaatgcatcccg 289
             | ||||||||||| ||||||| |||||||| ||||||
Sbjct: 91204 ggacaaacatgatcatatccatggtgaatgaatcccg 91240
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>emb|AL713947.3|CNS07YPQ Oryza sativa chromosome 12, . BAC OJ1003_A04 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124959

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 135/169 (79%)
 Strand = Plus / Plus

                                                                         
Query: 124   gctacttggtgaactcaagagcgtaaaagttgaagaatatgtaggttttcttgatgccac 183
             |||||||  |||||||||| ||||| ||||| ||||||||||||||   |  || |  ||
Sbjct: 90184 gctacttattgaactcaagggcgtagaagttcaagaatatgtaggtcgaccggaaggtac 90243

                                                                         
Query: 184   cggtaaatccagcttgtttggctagcctggcaaactccttctccgtcctctgctttgctc 243
             ||||||| ||||  |  ||||| ||| | |||||||| | ||| ||||| |||||  || 
Sbjct: 90244 cggtaaagccagactccttggcaagctttgcaaactcttgctctgtcctgtgcttcccta 90303

                                                              
Query: 244   ccttgaagagcacaaacatgatgatatccaaggtgaatgcatcccgcgc 292
             |||||||||| ||||||| ||| ||||||| |||||||| |||| ||||
Sbjct: 90304 ccttgaagaggacaaacaagatcatatccatggtgaatgaatcctgcgc 90352



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 455   actctcatacatatctccagccacatgttc 484
             ||||||||||||||||||||| | ||||||
Sbjct: 91032 actctcatacatatctccagctatatgttc 91061
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>gb|AC165365.3| Mus musculus BAC clone RP23-28N13 from chromosome 6, complete sequence
          Length = 238262

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 459    tcatacatatctccagccacatgtt 483
              |||||||||| ||||||||||||||
Sbjct: 237760 tcatacatatatccagccacatgtt 237784
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>dbj|AK134874.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length
            enriched library, clone:6430501C11
            product:unclassifiable, full insert sequence
          Length = 1789

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 459  tcatacatatctccagccacatgtt 483
            |||||||||| ||||||||||||||
Sbjct: 1024 tcatacatatatccagccacatgtt 1048
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>gb|AC169981.3| Mus musculus BAC clone RP24-346E16 from chromosome 6, complete sequence
          Length = 150872

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 459   tcatacatatctccagccacatgtt 483
             |||||||||| ||||||||||||||
Sbjct: 45951 tcatacatatatccagccacatgtt 45975
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 151    agttgaagaatatgtaggttttctt 175
              |||||||||| ||||||||||||||
Sbjct: 313473 agttgaagaaaatgtaggttttctt 313449
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>gb|AC093477.6| Mus musculus chromosome 1, clone RP23-58B6, complete sequence
          Length = 225321

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 246    ttgaagagcacaaacatgat 265
              ||||||||||||||||||||
Sbjct: 180691 ttgaagagcacaaacatgat 180672
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>emb|BX572095.1| Prochlorococcus marinus MIT9313 complete genome; segment 1/7
          Length = 349391

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    tggcaaactccttctccgtc 230
              ||||||||||||||||||||
Sbjct: 340353 tggcaaactccttctccgtc 340372
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>gb|AC123904.5| Homo sapiens 12 BAC RP11-361A23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 125400

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 257    aaacatgatgatatccaagg 276
              ||||||||||||||||||||
Sbjct: 120643 aaacatgatgatatccaagg 120624
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>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence
          Length = 129658

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    acaaacatgatgatatccaa 274
              ||||||||||||||||||||
Sbjct: 111959 acaaacatgatgatatccaa 111978
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>dbj|AB057033.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK101
          Length = 734

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 ttttgggagagcgttgtggc 372
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>dbj|AB057031.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK89
          Length = 734

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 ttttgggagagcgttgtggc 372
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>dbj|AB057016.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK41
          Length = 728

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 ttttgggagagcgttgtggc 372
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>dbj|AB057015.1| Helicobacter pylori cagA gene for cytotoxin associated protein
           CagA, partial cds, 3' region, strain:JapanK35
          Length = 734

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 353 ttttgggagagcgttgtggc 372
           ||||||||||||||||||||
Sbjct: 137 ttttgggagagcgttgtggc 118
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>gb|AF269342.1|AF269342 Staphylococcus epidermidis strain SR1 clone step.1002d03 genomic
           sequence
          Length = 3734

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 148 aaaagttgaagaatatgtag 167
           ||||||||||||||||||||
Sbjct: 177 aaaagttgaagaatatgtag 158
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>gb|AF269321.1|AF269321 Staphylococcus epidermidis strain SR1 clone step.1002a08 genomic
            sequence
          Length = 3383

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 148  aaaagttgaagaatatgtag 167
            ||||||||||||||||||||
Sbjct: 2238 aaaagttgaagaatatgtag 2257
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>gb|AF270232.1|AF270232 Staphylococcus epidermidis strain SR1 clone step.1055e11 genomic
            sequence
          Length = 2995

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  aaaagttgaagaatatgtag 167
            ||||||||||||||||||||
Sbjct: 1549 aaaagttgaagaatatgtag 1530
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    aaaagttgaagaatatgtag 167
              ||||||||||||||||||||
Sbjct: 226670 aaaagttgaagaatatgtag 226689
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>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18,
              complete sequence
          Length = 248419

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    cggtaaatccagcttgtttg 203
              ||||||||||||||||||||
Sbjct: 147510 cggtaaatccagcttgtttg 147491
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>gb|AC002352.1|AC002352 Homo sapiens 12q24 PAC P256D10 complete sequence
          Length = 162405

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   ggctagcctggcaaactcct 222
             ||||||||||||||||||||
Sbjct: 87830 ggctagcctggcaaactcct 87811
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    aaaagttgaagaatatgtag 167
              ||||||||||||||||||||
Sbjct: 342005 aaaagttgaagaatatgtag 342024
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>dbj|AP005671.2| Homo sapiens genomic DNA, chromosome 18 clone:CTD-3096M3, complete
             sequence
          Length = 86000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   tcccttgaagagcacaaaca 261
             ||||||||||||||||||||
Sbjct: 62557 tcccttgaagagcacaaaca 62538
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>gb|AC131584.7| Mus musculus chromosome 1, clone RP23-215C21, complete sequence
          Length = 197346

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   ttgaagagcacaaacatgat 265
             ||||||||||||||||||||
Sbjct: 79901 ttgaagagcacaaacatgat 79882
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>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18,
              complete sequence
          Length = 193827

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    cggtaaatccagcttgtttg 203
              ||||||||||||||||||||
Sbjct: 173244 cggtaaatccagcttgtttg 173225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,667,416
Number of Sequences: 3902068
Number of extensions: 2667416
Number of successful extensions: 47650
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47551
Number of HSP's gapped (non-prelim): 97
length of query: 499
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 477
effective length of database: 17,147,199,772
effective search space: 8179214291244
effective search space used: 8179214291244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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