ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8a18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK072398.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 5e-32
2ref|XM_473617.1| Oryza sativa (japonica cultivar-group), predic... 125 2e-25
3emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4,... 125 2e-25
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 125 2e-25
5dbj|AK104058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 1e-11
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
7dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
8dbj|AK103328.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
9gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome... 44 0.58
10gb|AC145807.2| Xenopus tropicalis clone CH216-9P15, complete seq... 44 0.58
11gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 44 0.58
12gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cance... 44 0.58
13gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's ... 42 2.3
14emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chr... 42 2.3
15emb|BX649540.7| Zebrafish DNA sequence from clone CH211-229O8 in... 42 2.3
16gb|M27036.1|MUSIGKC58A Mus musculus (C.C58) germline IgK chain g... 42 2.3
17gb|AY838449.1| Lumbriculus variegatus mitochondrial ATP synthase... 40 9.1
18gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete... 40 9.1
19gb|AC132148.3| Mus musculus BAC clone RP23-6N21 from chromosome ... 40 9.1
20gb|AC087063.20| Mus musculus strain C57BL/6J clone rp23-20o47 ma... 40 9.1
21gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, compl... 40 9.1
22emb|AL162456.14| Human DNA sequence from clone RP11-95C14 on chr... 40 9.1
23emb|AL035443.4|HS137H15 Human DNA sequence from clone RP1-137H15... 40 9.1
24emb|AL031686.2|HS981L23 Human DNA sequence from clone RP5-981L23... 40 9.1
25emb|X79509.1|BSBSECIM B.stearothermophilus BseCIM gene 40 9.1
26gb|AC157100.10| Mus musculus 6 BAC RP24-459E13 (Roswell Park Can... 40 9.1
27gb|AC163294.2| Mus musculus BAC clone RP23-187J1 from chromosome... 40 9.1
28gb|AC010110.7| Drosophila melanogaster 3L BAC RP98-9N2 (Roswell ... 40 9.1
29gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, comp... 40 9.1
30gb|AF098974.2|AF098974 Bacillus stearothermophilus hypothetical ... 40 9.1
31gb|AC022088.5|AC022088 Homo sapiens chromosome 5 clone CTB-110D2... 40 9.1
32gb|AC106790.3| Homo sapiens chromosome 5 clone RP11-376E20, comp... 40 9.1
33gb|AC011450.4|AC011450 Homo sapiens chromosome 19 clone CTC-301O... 40 9.1
34gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25... 40 9.1
35emb|AL157911.4|CNS01RGB Human chromosome 14 DNA sequence BAC R-1... 40 9.1
36gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 ... 40 9.1
37dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.1
38dbj|AP003063.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.1
39emb|BX295541.1|HS172N19 Homo sapiens chromosome X PAC RP1-172N19... 40 9.1
40gb|AC154000.4| Mus musculus 6 BAC RP24-313C5 (Roswell Park Cance... 40 9.1
41emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chr... 40 9.1
42emb|AL163853.4|CNS05TBM Human chromosome 14 DNA sequence BAC R-2... 40 9.1
43emb|AL928939.6| Mouse DNA sequence from clone RP23-294B13 on chr... 40 9.1
44emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on ch... 40 9.1 
>dbj|AK072398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O17, full
            insert sequence
          Length = 2139

 Score =  147 bits (74), Expect = 5e-32
 Identities = 241/297 (81%), Gaps = 6/297 (2%)
 Strand = Plus / Minus

                                                                        
Query: 368  aatcagcagcactgtgtggtgcttccaaattcaacgccatgtgacttaataatcctggca 427
            |||||||||||||| ||||||||||| | ||||||||||||| |||| |||||| | |||
Sbjct: 1811 aatcagcagcactgcgtggtgcttcccagttcaacgccatgtaacttgataatcttagca 1752

                                                                        
Query: 428  gctcccaaaagaatgtcctgttctgcataaatcaactcttcctttctcattttttggagg 487
            ||  ||| ||||||| | |||  || | | | | |||| |||||| |||||||   ||||
Sbjct: 1751 gcctccagaagaatgccttgtgttgtagacagccactcatcctttgtcattttcgtgagg 1692

                                                                        
Query: 488  atgcaccctatcacaagctctccatatgaactttccaatcttgagaggtagcagtaagga 547
             |||| || ||    ||||||||||||||||||||||||||||| || || || ||||||
Sbjct: 1691 ttgcatccaatggtgagctctccatatgaactttccaatcttgaaagataacaataagga 1632

                                                                        
Query: 548  gca------tctgtttccaagataacttttgggttggaccttaacatagcctttatctcc 601
            ||       ||||  || |||| ||| ||||||||||||||||||||| | |||||||||
Sbjct: 1631 gctggtgcttctgagtctaagacaacctttgggttggaccttaacataacttttatctcc 1572

                                                                     
Query: 602  tctgctacagcaggaaccttctcaatatcctcaagtcttataggaatcttggtcaca 658
            |||| ||  ||||||||||| ||||||||||||| ||| ||||||||||| ||||||
Sbjct: 1571 tctgatatggcaggaaccttttcaatatcctcaattctaataggaatctttgtcaca 1515
to top
>ref|XM_473617.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1818

 Score =  125 bits (63), Expect = 2e-25
 Identities = 137/162 (84%), Gaps = 6/162 (3%)
 Strand = Plus / Minus

                                                                        
Query: 503  agctctccatatgaactttccaatcttgagaggtagcagtaaggagca------tctgtt 556
            ||||||||||||||||||||||||||||| || || || ||||||||       ||||  
Sbjct: 1685 agctctccatatgaactttccaatcttgaaagataacaataaggagctggtgcttctgag 1626

                                                                        
Query: 557  tccaagataacttttgggttggaccttaacatagcctttatctcctctgctacagcagga 616
            || |||| ||| ||||||||||||||||||||| | ||||||||||||| ||  ||||||
Sbjct: 1625 tctaagacaacctttgggttggaccttaacataacttttatctcctctgatatggcagga 1566

                                                      
Query: 617  accttctcaatatcctcaagtcttataggaatcttggtcaca 658
            ||||| ||||||||||||| ||| ||||||||||| ||||||
Sbjct: 1565 accttttcaatatcctcaattctaataggaatctttgtcaca 1524



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                
Query: 370  tcagcagcactgtgtggtgcttccaaattcaacgccatgtgacttaataatc 421
            |||||||||||| ||||||||||| | ||||||||||||| |||| ||||||
Sbjct: 1818 tcagcagcactgcgtggtgcttcccagttcaacgccatgtaacttgataatc 1767
to top
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
             complete sequence
          Length = 157734

 Score =  125 bits (63), Expect = 2e-25
 Identities = 137/162 (84%), Gaps = 6/162 (3%)
 Strand = Plus / Minus

                                                                         
Query: 503   agctctccatatgaactttccaatcttgagaggtagcagtaaggagca------tctgtt 556
             ||||||||||||||||||||||||||||| || || || ||||||||       ||||  
Sbjct: 74732 agctctccatatgaactttccaatcttgaaagataacaataaggagctggtgcttctgag 74673

                                                                         
Query: 557   tccaagataacttttgggttggaccttaacatagcctttatctcctctgctacagcagga 616
             || |||| ||| ||||||||||||||||||||| | ||||||||||||| ||  ||||||
Sbjct: 74672 tctaagacaacctttgggttggaccttaacataacttttatctcctctgatatggcagga 74613

                                                       
Query: 617   accttctcaatatcctcaagtcttataggaatcttggtcaca 658
             ||||| ||||||||||||| ||| ||||||||||| ||||||
Sbjct: 74612 accttttcaatatcctcaattctaataggaatctttgtcaca 74571



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                   
Query: 368   aatcagcagcactgtgtggtgcttccaaattcaacgccatgtgacttaataatc 421
             |||||||||||||| ||||||||||| | ||||||||||||| |||| ||||||
Sbjct: 75298 aatcagcagcactgcgtggtgcttcccagttcaacgccatgtaacttgataatc 75245
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  125 bits (63), Expect = 2e-25
 Identities = 137/162 (84%), Gaps = 6/162 (3%)
 Strand = Plus / Minus

                                                                            
Query: 503      agctctccatatgaactttccaatcttgagaggtagcagtaaggagca------tctgtt 556
                ||||||||||||||||||||||||||||| || || || ||||||||       ||||  
Sbjct: 29165273 agctctccatatgaactttccaatcttgaaagataacaataaggagctggtgcttctgag 29165214

                                                                            
Query: 557      tccaagataacttttgggttggaccttaacatagcctttatctcctctgctacagcagga 616
                || |||| ||| ||||||||||||||||||||| | ||||||||||||| ||  ||||||
Sbjct: 29165213 tctaagacaacctttgggttggaccttaacataacttttatctcctctgatatggcagga 29165154

                                                          
Query: 617      accttctcaatatcctcaagtcttataggaatcttggtcaca 658
                ||||| ||||||||||||| ||| ||||||||||| ||||||
Sbjct: 29165153 accttttcaatatcctcaattctaataggaatctttgtcaca 29165112



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 368      aatcagcagcactgtgtggtgcttccaaattcaacgccatgtgacttaataatc 421
                |||||||||||||| ||||||||||| | ||||||||||||| |||| ||||||
Sbjct: 29165839 aatcagcagcactgcgtggtgcttcccagttcaacgccatgtaacttgataatc 29165786
to top
>dbj|AK104058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F06, full
           insert sequence
          Length = 504

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 133/164 (81%)
 Strand = Plus / Minus

                                                                       
Query: 368 aatcagcagcactgtgtggtgcttccaaattcaacgccatgtgacttaataatcctggca 427
           |||||||||||||| ||||||||||| | ||||||||||||| |||| |||||| | |||
Sbjct: 171 aatcagcagcactgcgtggtgcttcccagttcaacgccatgtaacttgataatcttagca 112

                                                                       
Query: 428 gctcccaaaagaatgtcctgttctgcataaatcaactcttcctttctcattttttggagg 487
           ||  ||| ||||||| | |||  || | | | | |||| |||||| |||||||   ||||
Sbjct: 111 gcctccagaagaatgccttgtgttgtagacagccactcatcctttgtcattttcgtgagg 52

                                                       
Query: 488 atgcaccctatcacaagctctccatatgaactttccaatcttga 531
            |||| || ||    |||||||||||||||||||||||||||||
Sbjct: 51  ttgcatccaatggtgagctctccatatgaactttccaatcttga 8
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                   
Query: 502      aagctctccatatgaactttccaatcttgagaggtagcagtaaggagcatc 552
                ||||||||||| ||||||||| || | |||||| |||||||||||||||||
Sbjct: 27820910 aagctctccatgtgaactttctaaccgtgagagatagcagtaaggagcatc 27820860



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                          
Query: 569      tttgggttggaccttaacatagcctttatctcctctgctacagcaggaaccttctcaa 626
                |||||||||||||||||| |  | ||||||||||||| || || ||||| ||| ||||
Sbjct: 27820855 tttgggttggaccttaacttcacttttatctcctctgatatagtaggaatcttttcaa 27820798
to top
>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0663F07
          Length = 159046

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 502    aagctctccatatgaactttccaatcttgagaggtagcagtaaggagcatc 552
              ||||||||||| ||||||||| || | |||||| |||||||||||||||||
Sbjct: 106243 aagctctccatgtgaactttctaaccgtgagagatagcagtaaggagcatc 106193



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                        
Query: 569    tttgggttggaccttaacatagcctttatctcctctgctacagcaggaaccttctcaa 626
              |||||||||||||||||| |  | ||||||||||||| || || ||||| ||| ||||
Sbjct: 106188 tttgggttggaccttaacttcacttttatctcctctgatatagtaggaatcttttcaa 106131
to top
>dbj|AK103328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125M22, full
            insert sequence
          Length = 2095

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                               
Query: 502  aagctctccatatgaactttccaatcttgagaggtagcagtaaggagcatc 552
            ||||||||||| ||||||||| || | |||||| |||||||||||||||||
Sbjct: 1752 aagctctccatgtgaactttctaaccgtgagagatagcagtaaggagcatc 1702



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 569  tttgggttggaccttaacatagcctttatctcctctgctacagcaggaaccttctcaa 626
            |||||||||||||||||| |  | ||||||||||||| || || ||||| ||| ||||
Sbjct: 1697 tttgggttggaccttaacttcacttttatctcctctgatatagtaggaatcttttcaa 1640
to top
>gb|AC131678.4| Mus musculus BAC clone RP23-333L1 from chromosome 3, complete sequence
          Length = 203750

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 559    caagataacttttgggttggacctta 584
              |||||||| |||||||||||||||||
Sbjct: 126870 caagataaattttgggttggacctta 126895
to top
>gb|AC145807.2| Xenopus tropicalis clone CH216-9P15, complete sequence
          Length = 225808

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 175    aacgcttgacagtaatatattc 196
              ||||||||||||||||||||||
Sbjct: 204611 aacgcttgacagtaatatattc 204632
to top
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 118     acaccgacgaatcgtggaaaac 139
               ||||||||||||||||||||||
Sbjct: 3161555 acaccgacgaatcgtggaaaac 3161576
to top
>gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 145820

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 359    caacatcagaatcagcagcact 380
              ||||||||||||||||||||||
Sbjct: 110649 caacatcagaatcagcagcact 110670
to top
>gb|AC131129.4| Rattus norvegicus 17 BAC CH230-15O20 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 232401

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 347    ttgagtttgagacaacatcag 367
              |||||||||||||||||||||
Sbjct: 108099 ttgagtttgagacaacatcag 108119
to top
>emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chromosome 10 Contains part
              of the NRG3 gene for neuregulin 3, complete sequence
          Length = 196000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 518    ctttccaatcttgagaggtag 538
              |||||||||||||||||||||
Sbjct: 158546 ctttccaatcttgagaggtag 158566
to top
>emb|BX649540.7| Zebrafish DNA sequence from clone CH211-229O8 in linkage group 3,
             complete sequence
          Length = 120836

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 441   tgtcctgttctgcataaatca 461
             |||||||||||||||||||||
Sbjct: 24741 tgtcctgttctgcataaatca 24761
to top
>gb|M27036.1|MUSIGKC58A Mus musculus (C.C58) germline IgK chain gene, J1-5 region
          Length = 1736

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 461 aactcttcctttctcattttt 481
           |||||||||||||||||||||
Sbjct: 987 aactcttcctttctcattttt 967
to top
>gb|AY838449.1| Lumbriculus variegatus mitochondrial ATP synthase alpha subunit
           mRNA, partial cds; nuclear gene for mitochondrial
           product
          Length = 312

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 388 gcttccaaattcaacgccat 407
           ||||||||||||||||||||
Sbjct: 95  gcttccaaattcaacgccat 76
to top
>gb|AC007578.6| Drosophila melanogaster clone BACR09A11, complete sequence
          Length = 170684

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 359   caacatcagaatcagcagca 378
             ||||||||||||||||||||
Sbjct: 48077 caacatcagaatcagcagca 48096
to top
>gb|AC132148.3| Mus musculus BAC clone RP23-6N21 from chromosome 19, complete sequence
          Length = 191402

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    acaccaagcaaaatctcctc 300
              ||||||||||||||||||||
Sbjct: 122952 acaccaagcaaaatctcctc 122971
to top
>gb|AC087063.20| Mus musculus strain C57BL/6J clone rp23-20o47 map 7, complete sequence
          Length = 241381

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    aactcttcctttctcatttt 480
              ||||||||||||||||||||
Sbjct: 162655 aactcttcctttctcatttt 162674



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    aactcttcctttctcatttt 480
              ||||||||||||||||||||
Sbjct: 155408 aactcttcctttctcatttt 155427



 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    aactcttcctttctcatttt 480
              ||||||||||||||||||||
Sbjct: 145817 aactcttcctttctcatttt 145836
to top
>gb|AC010295.7| Homo sapiens chromosome 5 clone CTB-143H13, complete sequence
          Length = 108051

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 450   ctgcataaatcaactcttcctttc 473
             ||||||| ||||||||||||||||
Sbjct: 76538 ctgcatatatcaactcttcctttc 76561
to top
>emb|AL162456.14| Human DNA sequence from clone RP11-95C14 on chromosome 13 Contains part
             of the GPC5 gene for glypican 5, complete sequence
          Length = 165100

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 470   tttctcattttttggaggat 489
             ||||||||||||||||||||
Sbjct: 86039 tttctcattttttggaggat 86020
to top
>emb|AL035443.4|HS137H15 Human DNA sequence from clone RP1-137H15 on chromosome Xq26.2-27.2
             Contains a novel gene, the ZIC3 gene for Zic family member
             3 heterotaxy (odd-paired homolog, Drosophila) and four CpG
             islands, complete sequence
          Length = 109339

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   atgtcgccaaatttagcacatcaa 238
             |||| |||||||||||||||||||
Sbjct: 59756 atgttgccaaatttagcacatcaa 59733
to top
>emb|AL031686.2|HS981L23 Human DNA sequence from clone RP5-981L23 on chromosome 20q12.1-13.2
             Contains the 5' end of the ELMO2 gene for engulfment and
             cell motility 2 (ced-12 homolog, C. elegans), a Krueppel
             type zinc-finger protein pseudogene, a Makorin (MKRN1 or
             MKRN3) ring finger protein pseudogene, a novel KRAB box
             type zinc-finger protein gene, a novel gene
             (DKFZp547G0215) and a CpG island, complete sequence
          Length = 94817

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 450   ctgcataaatcaactcttcctttc 473
             |||||| |||||||||||||||||
Sbjct: 26439 ctgcatcaatcaactcttcctttc 26416
to top
>emb|X79509.1|BSBSECIM B.stearothermophilus BseCIM gene
          Length = 1737

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 454 ataaatcaactcttcctttc 473
           ||||||||||||||||||||
Sbjct: 487 ataaatcaactcttcctttc 468
to top
>gb|AC157100.10| Mus musculus 6 BAC RP24-459E13 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 192228

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    aagaatgtcctgttctgcat 455
              ||||||||||||||||||||
Sbjct: 125061 aagaatgtcctgttctgcat 125042
to top
>gb|AC163294.2| Mus musculus BAC clone RP23-187J1 from chromosome 9, complete sequence
          Length = 203706

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 366    agaatcagcagcactgtgtg 385
              ||||||||||||||||||||
Sbjct: 105565 agaatcagcagcactgtgtg 105584
to top
>gb|AC010110.7| Drosophila melanogaster 3L BAC RP98-9N2 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172372

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   caacatcagaatcagcagca 378
             ||||||||||||||||||||
Sbjct: 83459 caacatcagaatcagcagca 83440
to top
>gb|AC106771.2| Homo sapiens chromosome 5 clone RP11-308B16, complete sequence
          Length = 172930

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 456  aaatcaactcttcctttctc 475
            ||||||||||||||||||||
Sbjct: 4400 aaatcaactcttcctttctc 4419
to top
>gb|AF098974.2|AF098974 Bacillus stearothermophilus hypothetical protein, cadmium efflux
            system accesory protein (cadC), cadmium efflux pump
            protein (cadA), and DNA methyltransferase genes, complete
            cds
          Length = 7304

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 454  ataaatcaactcttcctttc 473
            ||||||||||||||||||||
Sbjct: 5598 ataaatcaactcttcctttc 5579
to top
>gb|AC022088.5|AC022088 Homo sapiens chromosome 5 clone CTB-110D2, complete sequence
          Length = 108906

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 450   ctgcataaatcaactcttcctttc 473
             ||||||| ||||||||||||||||
Sbjct: 80623 ctgcatatatcaactcttcctttc 80600
to top
>gb|AC106790.3| Homo sapiens chromosome 5 clone RP11-376E20, complete sequence
          Length = 73401

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   aaatcaactcttcctttctc 475
             ||||||||||||||||||||
Sbjct: 66983 aaatcaactcttcctttctc 67002
to top
>gb|AC011450.4|AC011450 Homo sapiens chromosome 19 clone CTC-301O7, complete sequence
          Length = 106168

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tgtggatcatgccactgcat 91
             ||||||||||||||||||||
Sbjct: 36483 tgtggatcatgccactgcat 36502
to top
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete
             sequence
          Length = 261690

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 359   caacatcagaatcagcagca 378
             ||||||||||||||||||||
Sbjct: 48045 caacatcagaatcagcagca 48026
to top
>emb|AL157911.4|CNS01RGB Human chromosome 14 DNA sequence BAC R-16B13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175548

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 450    ctgcataaatcaactcttcctttc 473
              ||||||| ||||||||||||||||
Sbjct: 120499 ctgcatagatcaactcttcctttc 120476
to top
>gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 of 83 of the complete
              sequence
          Length = 301691

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    caacatcagaatcagcagca 378
              ||||||||||||||||||||
Sbjct: 270396 caacatcagaatcagcagca 270377
to top
>dbj|AP002499.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-107P10, complete
              sequence
          Length = 176429

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ctcttcctttctcatttttt 482
              ||||||||||||||||||||
Sbjct: 130786 ctcttcctttctcatttttt 130767
to top
>dbj|AP003063.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-65M17, complete
             sequence
          Length = 181208

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 463   ctcttcctttctcatttttt 482
             ||||||||||||||||||||
Sbjct: 71676 ctcttcctttctcatttttt 71657
to top
>emb|BX295541.1|HS172N19 Homo sapiens chromosome X PAC RP1-172N19 map Xq13 markers PHKA1-DXS227,
             complete sequence
          Length = 176589

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 525   atcttgagaggtagcagtaa 544
             ||||||||||||||||||||
Sbjct: 68423 atcttgagaggtagcagtaa 68442
to top
>gb|AC154000.4| Mus musculus 6 BAC RP24-313C5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 198580

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 463    ctcttcctttctcatttttt 482
              ||||||||||||||||||||
Sbjct: 133724 ctcttcctttctcatttttt 133705
to top
>emb|AL672096.4| Mouse DNA sequence from clone RP23-293N20 on chromosome X, complete
             sequence
          Length = 179420

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   cccaaaagaatgtcctgttc 450
             ||||||||||||||||||||
Sbjct: 68404 cccaaaagaatgtcctgttc 68385
to top
>emb|AL163853.4|CNS05TBM Human chromosome 14 DNA sequence BAC R-248B10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157985

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 450   ctgcataaatcaactcttcctttc 473
             ||||||| ||||||||||||||||
Sbjct: 29391 ctgcatagatcaactcttcctttc 29368
to top
>emb|AL928939.6| Mouse DNA sequence from clone RP23-294B13 on chromosome 2, complete
              sequence
          Length = 191291

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    gaccttaacatagcctttat 597
              ||||||||||||||||||||
Sbjct: 187619 gaccttaacatagcctttat 187600
to top
>emb|AL683892.12| Mouse DNA sequence from clone RP23-440J15 on chromosome X, complete
              sequence
          Length = 136809

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 267    atccctgccttcgcacaccaagca 290
              |||||||||||| |||||||||||
Sbjct: 126587 atccctgccttcccacaccaagca 126610


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,160,701
Number of Sequences: 3902068
Number of extensions: 6160701
Number of successful extensions: 202682
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 202485
Number of HSP's gapped (non-prelim): 197
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top