ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags8a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AKR2_ARATH (Q9SAR5) Ankyrin repeat domain-containing protein 2 (... 38 0.007
2SCRL9_ARATH (P82628) Hypothetical protein SCRL9 precursor 29 2.6
3SYL1_SULTO (Q974N4) Leucyl-tRNA synthetase 1 (EC 6.1.1.4) (Leuci... 28 4.4
4LMAN2_HUMAN (Q12907) Vesicular integral-membrane protein VIP36 p... 28 5.7
5LMAN2_CANFA (P49256) Vesicular integral-membrane protein VIP36 p... 28 5.7
6TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precur... 28 5.7

>AKR2_ARATH (Q9SAR5) Ankyrin repeat domain-containing protein 2 (AtAKR2)|
          Length = 342

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = -3

Query: 324 KTPIXVAKLNSQF*VVKLXEQDVFL 250
           KTPI VAKLNSQ  VVKL E+D FL
Sbjct: 318 KTPIDVAKLNSQLEVVKLLEKDAFL 342



to top

>SCRL9_ARATH (P82628) Hypothetical protein SCRL9 precursor|
          Length = 90

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 284 RWSSXWSRTCSYEANPQTRC 225
           RW++ ++ TCS   NPQT C
Sbjct: 34  RWTNAFNGTCSDRGNPQTMC 53



to top

>SYL1_SULTO (Q974N4) Leucyl-tRNA synthetase 1 (EC 6.1.1.4) (Leucine--tRNA|
           ligase 1) (LeuRS 1)
          Length = 945

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 290 SFRWSSXWSRTCSYEANPQT 231
           +F+W   W  +  YEANP+T
Sbjct: 11  AFKWQKEWENSKVYEANPET 30



to top

>LMAN2_HUMAN (Q12907) Vesicular integral-membrane protein VIP36 precursor (GP36b|
           glycoprotein) (Lectin, mannose-binding 2)
          Length = 356

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 20  GRWTKXQGCTAGSNQRXXDGLLLSSTARPHR*QAXSYQTK*TEGKRPTPCLDMTPLR 190
           GRWT+  GCTA    R  D  L    +R         + K  E K    C+D+T +R
Sbjct: 194 GRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDK-NEWKN---CIDITGVR 246



to top

>LMAN2_CANFA (P49256) Vesicular integral-membrane protein VIP36 precursor|
           (Lectin, mannose-binding 2)
          Length = 356

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +2

Query: 20  GRWTKXQGCTAGSNQRXXDGLLLSSTARPHR*QAXSYQTK*TEGKRPTPCLDMTPLR 190
           GRWT+  GCTA    R  D  L    +R         + K  E K    C+D+T +R
Sbjct: 194 GRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVMTDLEDK-NEWKN---CIDITGVR 246



to top

>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 78  PSXXRWFDPAVQPCXFVHLPCTG 10
           PS   W DP   PC + H+ CTG
Sbjct: 42  PSSFGWSDP--DPCKWTHIVCTG 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,240,128
Number of Sequences: 219361
Number of extensions: 675412
Number of successful extensions: 1377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top