>YHI0_YEAST (P38708) Putative prolyl-tRNA synthetase YHR020W (EC 6.1.1.15)|
           (Proline--tRNA ligase) (ProRS)
          Length = 688

 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 49/139 (35%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
 Frame = -1

Query: 569 QVRIVRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIISTWDEFIAAL 390
           QV +VRR++  K  +   +L  ++  +L+ +Q +L + AK   D   VI++ W  F+ AL
Sbjct: 550 QVVVVRRNDSKKYVVSFDELEARIPEILEEMQGDLFKKAKELFDTHRVIVNEWSGFVPAL 609

Query: 389 NDKKLILAPWCDEEEVEKDVKART-------------KGELGAAKTLCTPFDQPDLPSGT 249
           N K +ILAPWC   E E+D+K  +             K     AK+LC PFDQP L  G 
Sbjct: 610 NKKNVILAPWCGVMECEEDIKESSAKKDDGEEFEEDDKAPSMGAKSLCIPFDQPVLNEGQ 669

Query: 248 VCFASGKPAQKWSFWGRSY 192
            C    + A  +  +GRSY
Sbjct: 670 KCIKCERIAVNYCMFGRSY 688

>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:|
            Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
            ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
            (Proline--tRNA ligase)]
          Length = 1714

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
 Frame = -1

Query: 572  KQVRIVRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIISTWDEFIAA 393
            +Q+  VRRD   K+ IP  D+ +++  LL+ I  ++L  A+    +    ++ W +F   
Sbjct: 1577 QQLVAVRRDTVEKITIPLADVEKKIPALLETIHESMLNKAQEDMTSHTKKVTNWTDFCGF 1636

Query: 392  LNDKKLILAPWCDEEEVEKDVKART----KGELGA----AKTLCTPFDQP-DLPSGTVCF 240
            L  K ++LAP+C E   E  +KA +    + E GA    AK+LC PFDQP  + +   C 
Sbjct: 1637 LEQKNILLAPFCGEISCEDKIKADSARGEEAEPGAPAMGAKSLCIPFDQPAPIAASDKCI 1696

Query: 239  ---ASGKPAQKWSFWGRSY 192
                + KP + ++ +GRSY
Sbjct: 1697 NPSCTNKP-KFYTLFGRSY 1714

>SYEP_HUMAN (P07814) Bifunctional aminoacyl-tRNA synthetase [Includes:|
            Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
            ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
            (Proline--tRNA ligase)]
          Length = 1440

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 9/131 (6%)
 Frame = -1

Query: 557  VRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIISTWDEFIAALNDKK 378
            VRRD G K+ +   +   +++ +L+ IQ  L   A       +V+ +T ++F   L+  K
Sbjct: 1310 VRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGK 1369

Query: 377  LILAPWCDEEEVEKDVKARTKG----ELGA----AKTLCTPFDQ-PDLPSGTVCFASGKP 225
            ++  P+C E + E  +K  T      E GA    AK+LC PF    +L  G  C     P
Sbjct: 1370 IVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVCGKNP 1429

Query: 224  AQKWSFWGRSY 192
            A+ ++ +GRSY
Sbjct: 1430 AKYYTLFGRSY 1440

>SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Includes:|
            Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
            ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
            (Proline--tRNA ligase)]
          Length = 1512

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
 Frame = -1

Query: 557  VRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIISTWDEFIAALNDKK 378
            VRRD G K+ I   +   ++  +L+ IQ NL   A       +V+ +T ++F   L+  K
Sbjct: 1382 VRRDTGEKLTIAEKEAEAKLEKVLEDIQLNLFTRASEDLKTHMVVSNTLEDFQKVLDAGK 1441

Query: 377  LILAPWCDEEEVEKDVKARTKG----ELGA----AKTLCTPFDQ-PDLPSGTVCFASGKP 225
            +   P+C E + E  +K  T      E GA    AK+LC PF+   +L  G +C     P
Sbjct: 1442 VAQIPFCGEIDCEDWIKKMTARDQDVEPGAPSMGAKSLCIPFNPLCELQPGAMCVCGKNP 1501

Query: 224  AQKWSFWGRSY 192
            A+ ++ +GRSY
Sbjct: 1502 AKFYTLFGRSY 1512

>SYP_CLOST (Q9L4Q8) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 481

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 6/134 (4%)
 Frame = -1

Query: 575 NKQVRIVRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIISTWDEFIA 396
           N    I RRD  +K      ++ + V+ LLD +  ++LE A+A RD+       ++EF  
Sbjct: 360 NNVAMIARRDTLSKDSYSLDNIGDTVKNLLDTVHTDMLERARAHRDSKTFTFKDYEEF-- 417

Query: 395 ALNDKKLILAP------WCDEEEVEKDVKARTKGELGAAKTLCTPFDQPDLPSGTVCFAS 234
               +K+I  P      WC EEE E  +K  T          C PF Q +L  G  C   
Sbjct: 418 ---KRKMIETPGFAKGMWCGEEECEAKIKEDT-----GVTIRCIPFVQENL--GETCQFC 467

Query: 233 GKPAQKWSFWGRSY 192
           GKPA+   +  ++Y
Sbjct: 468 GKPAKHMVYLAKAY 481

>SYPC_METJA (Q58635) Bifunctional aminoacyl-tRNA synthetase (ProCysRS)|
           (AATS-CysPro) [Includes: Prolyl-tRNA synthetase (EC
           6.1.1.15) (Proline--tRNA ligase); Cysteinyl-tRNA
           synthetase (EC 6.1.1.16) (Cysteine--tRNA ligase)]
          Length = 455

 Score = 42.7 bits (99), Expect = 7e-04
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
 Frame = -1

Query: 575 NKQVRIVRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIIS--TWDEF 402
           NK++ + RRD   K  +  T L+E V   L+ I  N+   A  K +  I I+     DE 
Sbjct: 346 NKKITLFRRDTMEKFQVDETQLMEVVEKTLNNIMENIKNRAWEKFENFITILEDINPDEI 405

Query: 401 IAALNDKK-LILAPWCDE---EEVEKDVKARTKGE 309
              L++K+ +IL P+ +E   EE+E+ V+A   GE
Sbjct: 406 KNILSEKRGVILVPFKEEIYNEELEEKVEATILGE 440

>SYP_METTH (O26708) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 482

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
 Frame = -1

Query: 560 IVRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIISTWDEFIAALNDK 381
           I RRD G KV      + E +R L+  I  NL   A  + ++ I    T +E    +++K
Sbjct: 368 ISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEK 427

Query: 380 KLILA-PWCDEEEVEKDVKARTKGEL 306
           + I++  WC EEE   DV+ + + ++
Sbjct: 428 RGIISFMWCGEEECGMDVEEKVRVDI 453

>SYP_MYCLE (Q9Z5I7) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA|
           ligase) (ProRS)
          Length = 480

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 31/100 (31%), Positives = 40/100 (40%)
 Frame = -1

Query: 578 ANKQVRIVRRDNGAKVDIPSTDLVEQVRVLLDGIQANLLETAKAKRDACIVIISTWDEFI 399
           A   V + R    AK  I       ++  +L+  Q  LLE A   RD    ++  WD F 
Sbjct: 358 AGTTVMVRRIGEKAKQPIAIAAAPTELPGILEEFQRTLLERATQFRDDHTTLVDNWDAF- 416

Query: 398 AALNDKKLILAPWCDEEEVEKDVKARTKGELGAAKTLCTP 279
           A        LA  C   E E+D+KA T     AA   C P
Sbjct: 417 ATTVATGWALAIHCGNPECEEDIKAET-----AATPRCVP 451

>VGLM_EBV (P03215) Glycoprotein M|
          Length = 405

 Score = 32.7 bits (73), Expect = 0.77
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -1

Query: 182 CSATYTLPFSLSV--CSGKSVYFHFIDRLFWQICLFLILPDF*XMLS 48
           C A  TL FSLSV    G S YF   D +   + LFLILP F  +L+
Sbjct: 212 CLALETLVFSLSVFLALGNSFYFMVGDMVLGAVNLFLILPIFWYILT 258

>UNC52_CAEEL (Q06561) Basement membrane proteoglycan precursor (Perlecan homolog)|
            (Uncoordinated protein 52)
          Length = 3375

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
 Frame = -1

Query: 530  DIPSTDLVEQVRVLLDGIQAN-----LLETAKAKRDACIVIISTWDEFIAALNDKKLILA 366
            D+PS   VEQ  ++L  +  +       E  K +      +    D+FI  ++ + + L 
Sbjct: 2487 DLPSGSRVEQGVLMLPSVHRDDEGSYTCEIVKEENPVFSTVDLQIDDFIPVIDGEPIELP 2546

Query: 365  PWCDEEEVEKDVK-----ARTKG------ELGAAKTLCTPFD 273
            P  DEE V  D++     A  KG       + +   L TP+D
Sbjct: 2547 PLSDEEIVNLDIEITLNTANPKGIIFETKRINSGDLLATPYD 2588

>DPOM_AGABT (P30322) Probable DNA polymerase (EC 2.7.7.7) (Fragment)|
          Length = 797

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 446 KRDACIVIISTWDEFIAALNDKKLILAPWCDEEEVEKDVKARTKGE 309
           KR  C+    TWD+ +   N  K     WCDE   E +   R+ GE
Sbjct: 72  KRVVCLADNKTWDQSLKYWNSSKYPYPRWCDEYLTESEF-VRSIGE 116

>GNT1_GIBZE (Q4HVS2) Glucose N-acetyltransferase 1 (EC 2.4.1.-)|
           (N-acetylglucosaminyltransferase)
          Length = 431

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
 Frame = -1

Query: 413 WDEFIAALNDKKLILAPWCDEEEVEKDVKARTKGELGAAKTLCTPFDQPDLPSGT---VC 243
           WD  +A    K +  + W   +    DV+ R               +QPD P      VC
Sbjct: 369 WDSSVALSEAKFVHFSDWPVPKPWINDVETRLA-------------NQPDCPEDNKKRVC 415

Query: 242 FASGKPAQKWSFWGR 198
            + GK  QKW  W R
Sbjct: 416 ESVGKTGQKWIHWRR 430

>LOLA_SHEON (Q8EER2) Outer-membrane lipoprotein carrier protein precursor|
          Length = 206

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 363 WSQDQLFVIESCYEFIPSANDYNAGISLCFRCFQQVCLN 479
           WSQ  +   + CYE  P A D  AGIS    CF +  LN
Sbjct: 122 WSQYAVTKKQDCYEIKPKATD--AGISAVNVCFNKGTLN 158

>COX1_TRYBB (P04371) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 549

 Score = 25.4 bits (54), Expect(2) = 6.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 237 FWKACSKVVILGPQLLIPVFCHLYIAIFIVRLFWQICLF 121
           FW A +   +L    L+ +FC     +F V LFW  CLF
Sbjct: 451 FWSAFTLYGMLLLTFLV-IFC---CCLFNVILFWDYCLF 485



 Score = 22.7 bits (47), Expect(2) = 6.4
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 104 LFWQICLFLILPDF*XMLSYDTLQLWY---WLSIC 9
           LFW  CLF I      + +Y     +Y   W+ +C
Sbjct: 478 LFWDYCLFFI-----NLFTYSLSIFFYFYTWVPVC 507

>YA00_RHIME (Q52967) Hypothetical sufE-like protein R01000|
          Length = 140

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 204 PE*PLLSRLSRSKAHGSGRKIWLVKWSTQGFRSSKFTF 317
           PE P +SR S +K  G   ++WLV  +T        TF
Sbjct: 32  PEMPEVSRTSENKVQGCASQVWLVTHATGDAEDPLLTF 69

>Y674_VIBPA (Q87RV2) UPF0255 protein VP0674|
          Length = 415

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 216 LLSRLSRSKAHGSGRKIWLVKWS--TQGFRSSKFTFGPSFHVLLDLLLITPWSQDQLFVI 389
           L SRL +S    +     ++ WS   QGF SS+ T  P   + L+   ++P+S +QL  +
Sbjct: 320 LASRLGKSAVDINSMAGQMMAWSLKVQGFLSSRKTKVPILALSLEGDPVSPYSDNQLVAL 379

Query: 390 ESCY 401
            S Y
Sbjct: 380 FSHY 383

>LATS2_MOUSE (Q7TSJ6) Serine/threonine-protein kinase LATS2 (EC 2.7.11.1) (Large|
           tumor suppressor homolog 2) (Serine/threonine-protein
           kinase kpm) (Kinase phosphorylated during mitosis
           protein)
          Length = 1042

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 173 WQNTGINSCGPRMTTFEQAFQKQSTRFRKEDLAGQMEY 286
           W +     CG R+ T EQ  QKQ  R     L G   Y
Sbjct: 800 WDDVSNCRCGDRLKTLEQRAQKQHQRCLAHSLVGTPNY 837

>GOGA6_HUMAN (Q9NYA3) Golgin subfamily A member 6 (Golgin linked to PML)|
           (Golgin-like protein)
          Length = 693

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 170 RWQNTGINSCGPRMTTFEQAFQKQSTRFRKEDLAGQMEYTRFSQLQVHLWSELSR 334
           R Q   +   G R+   EQ  +KQ  R RKE+   Q +  R    +  LW +  R
Sbjct: 368 REQQKTLQEQGERLRKQEQRLRKQEERLRKEEERLQKQEKRLWDQEERLWKKEER 422


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,253,131
Number of Sequences: 219361
Number of extensions: 1815685
Number of successful extensions: 5323
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5312
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)