| Clone Name | rbags7k20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479079.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2300 Score = 311 bits (157), Expect = 2e-81 Identities = 283/325 (87%) Strand = Plus / Minus Query: 151 tgtatttactagcaaaatagatatagacaatgaaatttacagatgagatggctgtaagac 210 |||||||||| ||||||||||| || |||| ||||||||||| ||||||||||| |||| Sbjct: 2040 tgtatttactggcaaaatagatgtaaacaacgaaatttacagctgagatggctgcgagac 1981 Query: 211 accagtagaagtagtcaaggtgcccttggttcaggtcatcaggtatccatccagggctct 270 |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||| | Sbjct: 1980 accagtagtagtagtcaaggtgccctttgttcagatcatctggtatccatccagggctat 1921 Query: 271 gccattccctagtcaaccccgcaacaagggtgatgatagctgagctcaagtagttgccga 330 ||||| || |||| || ||| | ||||||||||| || ||||| ||||||||||||| Sbjct: 1920 gccatgtcccggtcaccctcgcgatgagggtgatgatcgccgagctgaagtagttgccga 1861 Query: 331 gagcagtggtgagcaacgcaaacgccgttaacatgctcttcatggagtccggcgcctggc 390 | || |||||||||| ||| || ||||| | ||||||||||||||||||||||||||| | Sbjct: 1860 gggcggtggtgagcagcgcgaatgccgtcagcatgctcttcatggagtccggcgcctgac 1801 Query: 391 catggaagaactctagctgagcaatgatgacgaagcattcggccccagcgatgacgaagt 450 | ||||||||||| ||||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 1800 cgtggaagaactccagctgagtgatgatggtgaagcactccgccccagcgatgacgaagt 1741 Query: 451 actgcggcagctgccacacgatgct 475 ||||||| ||||||||| ||||||| Sbjct: 1740 actgcgggagctgccacgcgatgct 1716 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 ctggacgctctctagcctctt 511 ||||||||||||||||||||| Sbjct: 1697 ctggacgctctctagcctctt 1677
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 311 bits (157), Expect = 2e-81 Identities = 283/325 (87%) Strand = Plus / Minus Query: 151 tgtatttactagcaaaatagatatagacaatgaaatttacagatgagatggctgtaagac 210 |||||||||| ||||||||||| || |||| ||||||||||| ||||||||||| |||| Sbjct: 24669912 tgtatttactggcaaaatagatgtaaacaacgaaatttacagctgagatggctgcgagac 24669853 Query: 211 accagtagaagtagtcaaggtgcccttggttcaggtcatcaggtatccatccagggctct 270 |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||| | Sbjct: 24669852 accagtagtagtagtcaaggtgccctttgttcagatcatctggtatccatccagggctat 24669793 Query: 271 gccattccctagtcaaccccgcaacaagggtgatgatagctgagctcaagtagttgccga 330 ||||| || |||| || ||| | ||||||||||| || ||||| ||||||||||||| Sbjct: 24669792 gccatgtcccggtcaccctcgcgatgagggtgatgatcgccgagctgaagtagttgccga 24669733 Query: 331 gagcagtggtgagcaacgcaaacgccgttaacatgctcttcatggagtccggcgcctggc 390 | || |||||||||| ||| || ||||| | ||||||||||||||||||||||||||| | Sbjct: 24669732 gggcggtggtgagcagcgcgaatgccgtcagcatgctcttcatggagtccggcgcctgac 24669673 Query: 391 catggaagaactctagctgagcaatgatgacgaagcattcggccccagcgatgacgaagt 450 | ||||||||||| ||||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 24669672 cgtggaagaactccagctgagtgatgatggtgaagcactccgccccagcgatgacgaagt 24669613 Query: 451 actgcggcagctgccacacgatgct 475 ||||||| ||||||||| ||||||| Sbjct: 24669612 actgcgggagctgccacgcgatgct 24669588 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 ctggacgctctctagcctctt 511 ||||||||||||||||||||| Sbjct: 24669569 ctggacgctctctagcctctt 24669549
>dbj|AP005809.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0039M16 Length = 133229 Score = 311 bits (157), Expect = 2e-81 Identities = 283/325 (87%) Strand = Plus / Minus Query: 151 tgtatttactagcaaaatagatatagacaatgaaatttacagatgagatggctgtaagac 210 |||||||||| ||||||||||| || |||| ||||||||||| ||||||||||| |||| Sbjct: 125979 tgtatttactggcaaaatagatgtaaacaacgaaatttacagctgagatggctgcgagac 125920 Query: 211 accagtagaagtagtcaaggtgcccttggttcaggtcatcaggtatccatccagggctct 270 |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||| | Sbjct: 125919 accagtagtagtagtcaaggtgccctttgttcagatcatctggtatccatccagggctat 125860 Query: 271 gccattccctagtcaaccccgcaacaagggtgatgatagctgagctcaagtagttgccga 330 ||||| || |||| || ||| | ||||||||||| || ||||| ||||||||||||| Sbjct: 125859 gccatgtcccggtcaccctcgcgatgagggtgatgatcgccgagctgaagtagttgccga 125800 Query: 331 gagcagtggtgagcaacgcaaacgccgttaacatgctcttcatggagtccggcgcctggc 390 | || |||||||||| ||| || ||||| | ||||||||||||||||||||||||||| | Sbjct: 125799 gggcggtggtgagcagcgcgaatgccgtcagcatgctcttcatggagtccggcgcctgac 125740 Query: 391 catggaagaactctagctgagcaatgatgacgaagcattcggccccagcgatgacgaagt 450 | ||||||||||| ||||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 125739 cgtggaagaactccagctgagtgatgatggtgaagcactccgccccagcgatgacgaagt 125680 Query: 451 actgcggcagctgccacacgatgct 475 ||||||| ||||||||| ||||||| Sbjct: 125679 actgcgggagctgccacgcgatgct 125655 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 ctggacgctctctagcctctt 511 ||||||||||||||||||||| Sbjct: 125636 ctggacgctctctagcctctt 125616
>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0040H10 Length = 132919 Score = 311 bits (157), Expect = 2e-81 Identities = 283/325 (87%) Strand = Plus / Minus Query: 151 tgtatttactagcaaaatagatatagacaatgaaatttacagatgagatggctgtaagac 210 |||||||||| ||||||||||| || |||| ||||||||||| ||||||||||| |||| Sbjct: 25849 tgtatttactggcaaaatagatgtaaacaacgaaatttacagctgagatggctgcgagac 25790 Query: 211 accagtagaagtagtcaaggtgcccttggttcaggtcatcaggtatccatccagggctct 270 |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||| | Sbjct: 25789 accagtagtagtagtcaaggtgccctttgttcagatcatctggtatccatccagggctat 25730 Query: 271 gccattccctagtcaaccccgcaacaagggtgatgatagctgagctcaagtagttgccga 330 ||||| || |||| || ||| | ||||||||||| || ||||| ||||||||||||| Sbjct: 25729 gccatgtcccggtcaccctcgcgatgagggtgatgatcgccgagctgaagtagttgccga 25670 Query: 331 gagcagtggtgagcaacgcaaacgccgttaacatgctcttcatggagtccggcgcctggc 390 | || |||||||||| ||| || ||||| | ||||||||||||||||||||||||||| | Sbjct: 25669 gggcggtggtgagcagcgcgaatgccgtcagcatgctcttcatggagtccggcgcctgac 25610 Query: 391 catggaagaactctagctgagcaatgatgacgaagcattcggccccagcgatgacgaagt 450 | ||||||||||| ||||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 25609 cgtggaagaactccagctgagtgatgatggtgaagcactccgccccagcgatgacgaagt 25550 Query: 451 actgcggcagctgccacacgatgct 475 ||||||| ||||||||| ||||||| Sbjct: 25549 actgcgggagctgccacgcgatgct 25525 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 ctggacgctctctagcctctt 511 ||||||||||||||||||||| Sbjct: 25506 ctggacgctctctagcctctt 25486
>dbj|AK061822.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B12, full insert sequence Length = 1233 Score = 311 bits (157), Expect = 2e-81 Identities = 283/325 (87%) Strand = Plus / Minus Query: 151 tgtatttactagcaaaatagatatagacaatgaaatttacagatgagatggctgtaagac 210 |||||||||| ||||||||||| || |||| ||||||||||| ||||||||||| |||| Sbjct: 839 tgtatttactggcaaaatagatgtaaacaacgaaatttacagctgagatggctgcgagac 780 Query: 211 accagtagaagtagtcaaggtgcccttggttcaggtcatcaggtatccatccagggctct 270 |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||| | Sbjct: 779 accagtagtagtagtcaaggtgccctttgttcagatcatctggtatccatccagggctat 720 Query: 271 gccattccctagtcaaccccgcaacaagggtgatgatagctgagctcaagtagttgccga 330 ||||| || |||| || ||| | ||||||||||| || ||||| ||||||||||||| Sbjct: 719 gccatgtcccggtcaccctcgcgatgagggtgatgatcgccgagctgaagtagttgccga 660 Query: 331 gagcagtggtgagcaacgcaaacgccgttaacatgctcttcatggagtccggcgcctggc 390 | || |||||||||| ||| || ||||| | ||||||||||||||||||||||||||| | Sbjct: 659 gggcggtggtgagcagcgcgaatgccgtcagcatgctcttcatggagtccggcgcctgac 600 Query: 391 catggaagaactctagctgagcaatgatgacgaagcattcggccccagcgatgacgaagt 450 | ||||||||||| ||||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 599 cgtggaagaactccagctgagtgatgatggtgaagcactccgccccagcgatgacgaagt 540 Query: 451 actgcggcagctgccacacgatgct 475 ||||||| ||||||||| ||||||| Sbjct: 539 actgcgggagctgccacgcgatgct 515 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 ctggacgctctctagcctctt 511 ||||||||||||||||||||| Sbjct: 496 ctggacgctctctagcctctt 476
>dbj|AK101099.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025A03, full insert sequence Length = 2306 Score = 303 bits (153), Expect = 4e-79 Identities = 282/325 (86%) Strand = Plus / Minus Query: 151 tgtatttactagcaaaatagatatagacaatgaaatttacagatgagatggctgtaagac 210 |||||||||| ||||||||||| || |||| ||||||||||| ||||||||||| |||| Sbjct: 2046 tgtatttactggcaaaatagatgtaaacaacgaaatttacagctgagatggctgcgagac 1987 Query: 211 accagtagaagtagtcaaggtgcccttggttcaggtcatcaggtatccatccagggctct 270 |||||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||| | Sbjct: 1986 accagtagtagtagtcaaggtgccctttgttcagatcatctggtatccatccagggctat 1927 Query: 271 gccattccctagtcaaccccgcaacaagggtgatgatagctgagctcaagtagttgccga 330 ||||| || |||| || ||| | ||||||||||| || ||||| ||||||||||||| Sbjct: 1926 gccatgtcccggtcaccctcgcgatgagggtgatgatcgccgagctgaagtagttgccga 1867 Query: 331 gagcagtggtgagcaacgcaaacgccgttaacatgctcttcatggagtccggcgcctggc 390 | || |||||||||| ||| | ||||| | ||||||||||||||||||||||||||| | Sbjct: 1866 gggcggtggtgagcagcgcgagtgccgtcagcatgctcttcatggagtccggcgcctgac 1807 Query: 391 catggaagaactctagctgagcaatgatgacgaagcattcggccccagcgatgacgaagt 450 | ||||||||||| ||||||| |||||| |||||| || ||||||||||||||||||| Sbjct: 1806 cgtggaagaactccagctgagtgatgatggtgaagcactccgccccagcgatgacgaagt 1747 Query: 451 actgcggcagctgccacacgatgct 475 ||||||| ||||||||| ||||||| Sbjct: 1746 actgcgggagctgccacgcgatgct 1722 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 491 ctggacgctctctagcctctt 511 ||||||||||||||||||||| Sbjct: 1703 ctggacgctctctagcctctt 1683
>gb|AY108457.1| Zea mays PCO106840 mRNA sequence Length = 912 Score = 285 bits (144), Expect = 9e-74 Identities = 294/344 (85%) Strand = Plus / Minus Query: 134 aacaattttctttaatctgtatttactagcaaaatagatatagacaatgaaatttacaga 193 ||||| |||||| ||| ||||||||||||||||||| | ||| |||| ||||| || | Sbjct: 777 aacaactttcttcaatttgtatttactagcaaaatacagatacacaacaaaattcaccaa 718 Query: 194 tgagatggctgtaagacaccagtagaagtagtcaaggtgcccttggttcaggtcatcagg 253 ||||| || ||||||||||||||| ||||||||||||| |||| |||||| ||||| || Sbjct: 717 tgagagggtagtaagacaccagtagtagtagtcaaggtgtcctttgttcagatcatctgg 658 Query: 254 tatccatccagggctctgccattccctagtcaaccccgcaacaagggtgatgatagctga 313 |||||| |||||||| |||||| |||| |||| ||| || | ||||||||||||||||| Sbjct: 657 tatccaaccagggctatgccataccctggtcacccctgcgatgagggtgatgatagctga 598 Query: 314 gctcaagtagttgccgagagcagtggtgagcaacgcaaacgccgttaacatgctcttcat 373 ||||||||| || || || |||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 597 gctcaagtaattcccaagggcagtggtgagcaatgcaaatgccgttaaaatgctcttcat 538 Query: 374 ggagtccggcgcctggccatggaagaactctagctgagcaatgatgacgaagcattcggc 433 |||||| |||||||||||| | |||||||| ||||||| ||||| ||||||| || || Sbjct: 537 ggagtctggcgcctggccacgaaagaactccagctgagtgatgataccgaagcactcagc 478 Query: 434 cccagcgatgacgaagtactgcggcagctgccacacgatgctta 477 |||||| |||||||||||||| || |||||||| || ||||||| Sbjct: 477 cccagcaatgacgaagtactgtggaagctgccatacaatgctta 434 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 504 agcctctttgcttctaaaagagcagccattgccatggcaaagatcattatgaaacgacca 563 |||||||| | ||||| ||| || ||||||||||||||||||||||| | ||||||||| Sbjct: 407 agcctcttggtttctagaagtgctgccattgccatggcaaagatcatcaggaaacgaccg 348 Query: 564 atcccgatcctctgcaactgcgttagctc 592 ||||| |||||||| ||||| || ||||| Sbjct: 347 atcccaatcctctgtaactgtgtgagctc 319
>ref|XM_462682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1782 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 361 acatgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 1549 acatgctcttcatggactccggcgcctcgctgtagaagaactccagctg 1501 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 445 cgaagtactgcggcagctgccacacgatgct 475 ||||||||||||||| ||||||| ||||||| Sbjct: 1465 cgaagtactgcggcatctgccacgcgatgct 1435
>ref|XM_473737.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1782 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 361 acatgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 1549 acatgctcttcatggactccggcgcctcgctgtagaagaactccagctg 1501 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 445 cgaagtactgcggcagctgccacacgatgct 475 ||||||||||||||| ||||||| ||||||| Sbjct: 1465 cgaagtactgcggcatctgccacgcgatgct 1435
>gb|AY305030.1| Oryza sativa (japonica cultivar-group) nitrate transporter NRT1;2 mRNA, complete cds Length = 1784 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 361 acatgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 1551 acatgctcttcatggactccggcgcctcgctgtagaagaactccagctg 1503 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 445 cgaagtactgcggcagctgccacacgatgct 475 ||||||||||||||| ||||||| ||||||| Sbjct: 1467 cgaagtactgcggcatctgccacgcgatgct 1437
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 361 acatgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 30199059 acatgctcttcatggactccggcgcctcgctgtagaagaactccagctg 30199011 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 445 cgaagtactgcggcagctgccacacgatgct 475 ||||||||||||||| ||||||| ||||||| Sbjct: 30198975 cgaagtactgcggcatctgccacgcgatgct 30198945 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 363 atgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 30192689 atgctcttcatggactccggcgcctcgctgtagaagaactccagctg 30192643 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatgct 475 |||||||||||||| ||||||| ||||||| Sbjct: 30192606 gaagtactgcggcatctgccacgcgatgct 30192577
>dbj|AK101480.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041C01, full insert sequence Length = 2178 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 361 acatgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 1779 acatgctcttcatggactccggcgcctcgctgtagaagaactccagctg 1731 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 445 cgaagtactgcggcagctgccacacgatgct 475 ||||||||||||||| ||||||| ||||||| Sbjct: 1695 cgaagtactgcggcatctgccacgcgatgct 1665
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 50.1 bits (25), Expect = 0.009 Identities = 43/49 (87%) Strand = Plus / Minus Query: 361 acatgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 95350 acatgctcttcatggactccggcgcctcgctgtagaagaactccagctg 95302 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 445 cgaagtactgcggcagctgccacacgatgct 475 ||||||||||||||| ||||||| ||||||| Sbjct: 95266 cgaagtactgcggcatctgccacgcgatgct 95236 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 363 atgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 88980 atgctcttcatggactccggcgcctcgctgtagaagaactccagctg 88934 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatgct 475 |||||||||||||| ||||||| ||||||| Sbjct: 88897 gaagtactgcggcatctgccacgcgatgct 88868
>ref|XM_462681.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1728 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 363 atgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 1493 atgctcttcatggactccggcgcctcgctgtagaagaactccagctg 1447 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatgct 475 |||||||||||||| ||||||| ||||||| Sbjct: 1410 gaagtactgcggcatctgccacgcgatgct 1381
>ref|XM_473736.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1728 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 363 atgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 1493 atgctcttcatggactccggcgcctcgctgtagaagaactccagctg 1447 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatgct 475 |||||||||||||| ||||||| ||||||| Sbjct: 1410 gaagtactgcggcatctgccacgcgatgct 1381
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 231 tgcccttggttcaggtcatcaggtatccatccagg 265 ||||||| ||||| || |||||||||||||||||| Sbjct: 7133187 tgcccttcgttcaagttatcaggtatccatccagg 7133221
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 449 gtactgcggcagctgccacacgatgct 475 ||||||||||| ||||||||||||||| Sbjct: 29314905 gtactgcggcacctgccacacgatgct 29314879 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gaatatagaaaatgttatat 89 |||||||||||||||||||| Sbjct: 21107062 gaatatagaaaatgttatat 21107081
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Plus Query: 231 tgcccttggttcaggtcatcaggtatccatccagg 265 ||||||| ||||| || |||||||||||||||||| Sbjct: 7131082 tgcccttcgttcaagttatcaggtatccatccagg 7131116
>gb|AC137696.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0049C20, from chromosome 3, complete sequence Length = 136098 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 231 tgcccttggttcaggtcatcaggtatccatccagg 265 ||||||| ||||| || |||||||||||||||||| Sbjct: 61151 tgcccttcgttcaagttatcaggtatccatccagg 61117
>dbj|AP003621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0621D05 Length = 180250 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 449 gtactgcggcagctgccacacgatgct 475 ||||||||||| ||||||||||||||| Sbjct: 25786 gtactgcggcacctgccacacgatgct 25760
>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0018H04 Length = 142053 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 449 gtactgcggcagctgccacacgatgct 475 ||||||||||| ||||||||||||||| Sbjct: 77703 gtactgcggcacctgccacacgatgct 77677
>gb|AF140606.1|AF140606 Oryza sativa nitrate transporter (NRT1) mRNA, complete cds Length = 1965 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 231 tgcccttggttcaggtcatcaggtatccatccagg 265 ||||||| ||||| || |||||||||||||||||| Sbjct: 1798 tgcccttcgttcaagttatcaggtatccatccagg 1764
>dbj|AK105711.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-E10, full insert sequence Length = 1914 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Plus Query: 363 atgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 312 atgctcttcatggactccggcgcctcgctgtagaagaactccagctg 358 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 446 gaagtactgcggcagctgccacacgatgct 475 |||||||||||||| ||||||| ||||||| Sbjct: 395 gaagtactgcggcatctgccacgcgatgct 424
>dbj|AK070685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059M14, full insert sequence Length = 857 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 449 gtactgcggcagctgccacacgatgct 475 ||||||||||| ||||||||||||||| Sbjct: 271 gtactgcggcacctgccacacgatgct 297
>dbj|AK070216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045E19, full insert sequence Length = 2944 Score = 46.1 bits (23), Expect = 0.14 Identities = 41/47 (87%) Strand = Plus / Minus Query: 363 atgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||||| |||||||||| || | ||||||||| ||||| Sbjct: 2417 atgctcttcatggactccggcgcctcgctgtagaagaactccagctg 2371 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatgct 475 |||||||||||||| ||||||| ||||||| Sbjct: 2334 gaagtactgcggcatctgccacgcgatgct 2305
>dbj|AK066920.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090P16, full insert sequence Length = 2047 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 231 tgcccttggttcaggtcatcaggtatccatccagg 265 ||||||| ||||| || |||||||||||||||||| Sbjct: 1847 tgcccttcgttcaagttatcaggtatccatccagg 1813
>ref|XM_467305.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1934 Score = 44.1 bits (22), Expect = 0.55 Identities = 40/46 (86%) Strand = Plus / Minus Query: 364 tgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||| ||||||||||| ||| ||||||||| ||||| Sbjct: 1636 tgctcttcatggtgtccggcgcctcgccgaagaagaactccagctg 1591 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatg 473 |||||||||||||| ||||||| ||||| Sbjct: 1554 gaagtactgcggcatctgccacgcgatg 1527
>gb|AC147258.2| Mus musculus BAC clone RP24-297K13 from chromosome 9, complete sequence Length = 156497 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 124 agccatcgataacaattttctttaat 149 ||||||| |||||||||||||||||| Sbjct: 85049 agccatcaataacaattttctttaat 85074
>emb|AL354736.10| Human DNA sequence from clone RP11-205B18 on chromosome 13 Contains the 5' end of a novel gene (FLJ32909), complete sequence Length = 158460 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 ttctggacataccttgagccaa 64 |||||||||||||||||||||| Sbjct: 124014 ttctggacataccttgagccaa 124035
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.55 Identities = 40/46 (86%) Strand = Plus / Minus Query: 364 tgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||| ||||||||||| ||| ||||||||| ||||| Sbjct: 28770990 tgctcttcatggtgtccggcgcctcgccgaagaagaactccagctg 28770945 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatg 473 |||||||||||||| ||||||| ||||| Sbjct: 28770908 gaagtactgcggcatctgccacgcgatg 28770881
>gb|AC138821.2| Homo sapiens chromosome 5 clone RP11-1104E16, complete sequence Length = 182236 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 aatttctgaatatagaaaatgt 84 |||||||||||||||||||||| Sbjct: 157217 aatttctgaatatagaaaatgt 157238
>gb|AC093274.4| Homo sapiens chromosome 5 clone RP11-374A4, complete sequence Length = 186608 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Minus Query: 63 aatttctgaatatagaaaatgt 84 |||||||||||||||||||||| Sbjct: 88513 aatttctgaatatagaaaatgt 88492
>dbj|AP004778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0459B01 Length = 163087 Score = 44.1 bits (22), Expect = 0.55 Identities = 40/46 (86%) Strand = Plus / Minus Query: 364 tgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||| ||||||||||| ||| ||||||||| ||||| Sbjct: 87563 tgctcttcatggtgtccggcgcctcgccgaagaagaactccagctg 87518 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatg 473 |||||||||||||| ||||||| ||||| Sbjct: 87481 gaagtactgcggcatctgccacgcgatg 87454
>dbj|AK109931.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-B06, full insert sequence Length = 1934 Score = 44.1 bits (22), Expect = 0.55 Identities = 40/46 (86%) Strand = Plus / Minus Query: 364 tgctcttcatggagtccggcgcctggccatggaagaactctagctg 409 |||||||||||| ||||||||||| ||| ||||||||| ||||| Sbjct: 1636 tgctcttcatggtgtccggcgcctcgccgaagaagaactccagctg 1591 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 446 gaagtactgcggcagctgccacacgatg 473 |||||||||||||| ||||||| ||||| Sbjct: 1554 gaagtactgcggcatctgccacgcgatg 1527
>gb|AC154593.2| Mus musculus BAC clone RP23-350J12 from chromosome 14, complete sequence Length = 214057 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 gagcagccattgccatggcaa 543 ||||||||||||||||||||| Sbjct: 16912 gagcagccattgccatggcaa 16892
>ref|NM_194556.1| Oryza sativa (japonica cultivar-group) putative peptide transporter (OSJNBa0015O22.22), mRNA Length = 1551 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 gctcttcatggagtccggcgcctgg 389 |||| |||||||||||||||||||| Sbjct: 1314 gctcctcatggagtccggcgcctgg 1290
>ref|NM_197912.1| Oryza sativa (japonica cultivar-group) putative peptide transporter (OSJNBa0056G17.8), mRNA Length = 1748 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 1416 actgcggcagctgccacgcgatgct 1392
>ref|NM_190804.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1566 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccagtagaagtagtcaaggtg 232 ||||||||||||||||||||| Sbjct: 1467 ccagtagaagtagtcaaggtg 1447
>gb|AC157610.2| Mus musculus chromosome 15, clone RP23-77H12, complete sequence Length = 164913 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 ttctgaatatagaaaatgttatata 90 ||||| ||||||||||||||||||| Sbjct: 43134 ttctgtatatagaaaatgttatata 43110
>gb|AC131781.3| Mus musculus BAC clone RP24-344J9 from chromosome 15, complete sequence Length = 139338 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 ttctgaatatagaaaatgttatata 90 ||||| ||||||||||||||||||| Sbjct: 58275 ttctgtatatagaaaatgttatata 58251
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 gctcttcatggagtccggcgcctgg 389 |||| |||||||||||||||||||| Sbjct: 659344 gctcctcatggagtccggcgcctgg 659368 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ccagtagaagtagtcaaggtgccc 235 |||| ||||||||||||||||||| Sbjct: 741103 ccagaagaagtagtcaaggtgccc 741126
>emb|AL596103.22| Mouse DNA sequence from clone RP23-309E16 on chromosome 11 Contains the P4ha2 gene for procollagen-proline 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase) alpha II polypeptide, a novel pseudogene, two novel genes, a diazepam binding inhibitor (Dbi) pseudogene, the Csf2 gene for colony stimulating factor 2 (granulocyte-macrophage), the Il3 gene for interleukin 3 and a CpG island, complete sequence Length = 199500 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 266 gctctgccattccctagtcaa 286 ||||||||||||||||||||| Sbjct: 115393 gctctgccattccctagtcaa 115413
>gb|AC068654.2| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0015O22 From Chromosome 10, complete sequence Length = 189349 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 gctcttcatggagtccggcgcctgg 389 |||| |||||||||||||||||||| Sbjct: 126952 gctcctcatggagtccggcgcctgg 126976
>gb|AC112910.3| Homo sapiens 3 BAC RP11-273F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115927 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 69 tgaatatagaaaatgttatat 89 ||||||||||||||||||||| Sbjct: 53436 tgaatatagaaaatgttatat 53416
>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence Length = 159145 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 69 tgaatatagaaaatgttatatacac 93 |||||| |||||||||||||||||| Sbjct: 121638 tgaataaagaaaatgttatatacac 121662
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 51554 actgcggcagctgccacgcgatgct 51530
>emb|BX537292.5| Zebrafish DNA sequence from clone CH211-213E17 in linkage group 10, complete sequence Length = 189446 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 76 agaaaatgttatatacactta 96 ||||||||||||||||||||| Sbjct: 18683 agaaaatgttatatacactta 18663
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 22596885 actgcggcagctgccacgcgatgct 22596861 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 gctcttcatggagtccggcgcctgg 389 |||| |||||||||||||||||||| Sbjct: 659344 gctcctcatggagtccggcgcctgg 659368 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ccagtagaagtagtcaaggtgccc 235 |||| ||||||||||||||||||| Sbjct: 741103 ccagaagaagtagtcaaggtgccc 741126
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccagtagaagtagtcaaggtg 232 ||||||||||||||||||||| Sbjct: 37795963 ccagtagaagtagtcaaggtg 37795943 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 2296623 cgatgatgaagtactgcggcacctgcca 2296596
>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence Length = 110085 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 69 tgaatatagaaaatgttatatacac 93 |||||| |||||||||||||||||| Sbjct: 95499 tgaataaagaaaatgttatatacac 95475
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0491F11 Length = 152274 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccagtagaagtagtcaaggtg 232 ||||||||||||||||||||| Sbjct: 17319 ccagtagaagtagtcaaggtg 17299
>dbj|AP003235.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039A07 Length = 148892 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccagtagaagtagtcaaggtg 232 ||||||||||||||||||||| Sbjct: 124264 ccagtagaagtagtcaaggtg 124244
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence Length = 141894 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 69 tgaatatagaaaatgttatatacac 93 |||||| |||||||||||||||||| Sbjct: 119498 tgaataaagaaaatgttatatacac 119474
>emb|AL671902.6| Mouse DNA sequence from clone RP23-358K4 on chromosome X, complete sequence Length = 49508 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 attttctttaatctgtattta 158 ||||||||||||||||||||| Sbjct: 27400 attttctttaatctgtattta 27380
>emb|BX649351.10| Zebrafish DNA sequence from clone CH211-168F19 in linkage group 4, complete sequence Length = 144569 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 tgaatatagaaaatgttatat 89 ||||||||||||||||||||| Sbjct: 81436 tgaatatagaaaatgttatat 81456
>dbj|AK105726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-G10, full insert sequence Length = 1942 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 1473 actgcggcagctgccacgcgatgct 1449
>dbj|AK099267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P15, full insert sequence Length = 1938 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 1463 actgcggcagctgccacgcgatgct 1439
>dbj|AK099219.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013086I05, full insert sequence Length = 1880 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 1481 actgcggcagctgccacgcgatgct 1457
>dbj|AK070527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060H09, full insert sequence Length = 1950 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 1481 actgcggcagctgccacgcgatgct 1457
>emb|CR854904.9| Zebrafish DNA sequence from clone CH211-214F6 in linkage group 10, complete sequence Length = 116150 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 76 agaaaatgttatatacactta 96 ||||||||||||||||||||| Sbjct: 115369 agaaaatgttatatacactta 115389
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 451 actgcggcagctgccacacgatgct 475 ||||||||||||||||| ||||||| Sbjct: 22609353 actgcggcagctgccacgcgatgct 22609329 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 365 gctcttcatggagtccggcgcctgg 389 |||| |||||||||||||||||||| Sbjct: 659341 gctcctcatggagtccggcgcctgg 659365 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ccagtagaagtagtcaaggtgccc 235 |||| ||||||||||||||||||| Sbjct: 741100 ccagaagaagtagtcaaggtgccc 741123
>emb|CT010582.12| Mouse DNA sequence from clone RP23-385M20 on chromosome 14, complete sequence Length = 216611 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 523 gagcagccattgccatggcaa 543 ||||||||||||||||||||| Sbjct: 73593 gagcagccattgccatggcaa 73573
>dbj|D84400.1| Oryza sativa (japonica cultivar-group) poxA gene for peroxidase, complete cds Length = 4237 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 365 gctcttcatggagtccggcgcctgg 389 |||| |||||||||||||||||||| Sbjct: 707 gctcctcatggagtccggcgcctgg 683
>dbj|AP003566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0008G24 Length = 152736 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 ccagtagaagtagtcaaggtg 232 ||||||||||||||||||||| Sbjct: 55211 ccagtagaagtagtcaaggtg 55191
>gb|AC164069.9| Mus musculus chromosome 15, clone RP23-422H17, complete sequence Length = 216364 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 cacacagcattctggacatacctt 57 ||||||||||||||||||| |||| Sbjct: 194096 cacacagcattctggacattcctt 194119
>ref|XM_515156.1| PREDICTED: Pan troglodytes similar to l(3)mbt-like 2 isoform a; H-l(3)mbt-like protein (LOC458863), mRNA Length = 2124 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1582 tcatcaggtatccatccagg 1563
>gb|AC159627.2| Mus musculus BAC clone RP24-202P24 from chromosome 12, complete sequence Length = 168305 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 aacaattttctttaatctgtattt 157 ||||||||||| |||||||||||| Sbjct: 152018 aacaattttctgtaatctgtattt 151995
>ref|NM_194568.1| Oryza sativa (japonica cultivar-group) putative LeOPT1 - oligopeptide transporter (OSJNBb0012A20.5), mRNA Length = 1776 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 212 ccagtagaagtagtcaaggtgccc 235 |||| ||||||||||||||||||| Sbjct: 1659 ccagaagaagtagtcaaggtgccc 1636
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 71 aatatagaaaatgttatatacact 94 |||||| ||||||||||||||||| Sbjct: 116749 aatatataaaatgttatatacact 116726
>gb|AC079685.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0012A20, complete sequence Length = 131599 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 212 ccagtagaagtagtcaaggtgccc 235 |||| ||||||||||||||||||| Sbjct: 21960 ccagaagaagtagtcaaggtgccc 21983
>gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, complete sequence Length = 159813 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 34 cacacagcattctggacatacctt 57 ||||||||||||||||||| |||| Sbjct: 44413 cacacagcattctggacattcctt 44436
>gb|BC017191.2| Homo sapiens l(3)mbt-like 2 (Drosophila), mRNA (cDNA clone MGC:2476 IMAGE:3138444), complete cds Length = 3213 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1424 tcatcaggtatccatccagg 1405
>ref|NM_001003689.1| Homo sapiens l(3)mbt-like 2 (Drosophila) (L3MBTL2), transcript variant 2, mRNA Length = 3310 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1435 tcatcaggtatccatccagg 1416
>ref|NM_031488.4| Homo sapiens l(3)mbt-like 2 (Drosophila) (L3MBTL2), transcript variant 1, mRNA Length = 3205 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1435 tcatcaggtatccatccagg 1416
>gb|AC102032.9| Mus musculus chromosome 3, clone RP23-78J18, complete sequence Length = 194207 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 atggaagaactctagctgag 411 |||||||||||||||||||| Sbjct: 97821 atggaagaactctagctgag 97802
>gb|AC124493.4| Mus musculus BAC clone RP23-462P13 from chromosome 1, complete sequence Length = 191967 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 agatggctgtaagacaccag 215 |||||||||||||||||||| Sbjct: 143693 agatggctgtaagacaccag 143674
>gb|AC124481.2| Mus musculus BAC clone RP24-119I10 from chromosome 1, complete sequence Length = 182261 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 agatggctgtaagacaccag 215 |||||||||||||||||||| Sbjct: 175080 agatggctgtaagacaccag 175099
>emb|AL356986.11| Human DNA sequence from clone RP11-395N6 on chromosome 1 Contains the 5' end of a known gene (FLJ10276), a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, a novel pseudogene, the 5' end of the ZBTB8 gene for zinc finger and BTB domain containing 8 and five CpG islands, complete sequence Length = 98390 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 501 tctagcctctttgcttctaa 520 |||||||||||||||||||| Sbjct: 60474 tctagcctctttgcttctaa 60455
>emb|AL035681.13|HS756G23 Human DNA sequence from clone RP4-756G23 on chromosome 22q13.31-13.33, complete sequence Length = 89948 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 19244 tcatcaggtatccatccagg 19225
>emb|AL136564.1|HSM801538 Homo sapiens mRNA; cDNA DKFZp761I141 (from clone DKFZp761I141) Length = 3071 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1435 tcatcaggtatccatccagg 1416
>emb|AJ305227.1|HSA305227 Homo sapiens mRNA for H-l(3)mbt-like protein, alternative variant b Length = 3299 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1420 tcatcaggtatccatccagg 1401
>emb|AJ305226.1|HSA305226 Homo sapiens mRNA for H-l(3)mbt-like protein, alternative variant a Length = 3194 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1420 tcatcaggtatccatccagg 1401
>ref|NM_184319.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1984 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 1499 cgatgatgaagtactgcggcacctgcca 1472
>gb|AC126538.1| Homo sapiens chromosome 16 clone CTD-3225F13, complete sequence Length = 188015 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aatttctgaatatagaaaat 82 |||||||||||||||||||| Sbjct: 46406 aatttctgaatatagaaaat 46387
>gb|AC114975.2| Homo sapiens chromosome 5 clone RP11-484L7, complete sequence Length = 197363 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 146 taatctgtatttactagcaaaatagata 173 ||||||||||||| || ||||||||||| Sbjct: 99268 taatctgtatttattatcaaaatagata 99241
>dbj|AK124470.1| Homo sapiens cDNA FLJ42479 fis, clone BRACE2031899 Length = 3039 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 aatttctgaatatagaaaat 82 |||||||||||||||||||| Sbjct: 143 aatttctgaatatagaaaat 162
>dbj|AK097052.1| Homo sapiens cDNA FLJ39733 fis, clone SMINT2016122 Length = 2432 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1504 tcatcaggtatccatccagg 1485
>dbj|AK056443.1| Homo sapiens cDNA FLJ31881 fis, clone NT2RP7002829, weakly similar to Scm-related gene containing four mbt domains Length = 3188 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1432 tcatcaggtatccatccagg 1413
>gb|AC024900.20| Homo sapiens 12 BAC RP11-549E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171970 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 ttctgaatatagaaaatgtt 85 |||||||||||||||||||| Sbjct: 122192 ttctgaatatagaaaatgtt 122211
>gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640I2 map 15q21.1, complete sequence Length = 161083 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 agaaaatgttatatacacttacaa 99 ||||||| |||||||||||||||| Sbjct: 40856 agaaaatattatatacacttacaa 40879
>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence Length = 173067 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 70 gaatatagaaaatgttatatacac 93 ||||| |||||||||||||||||| Sbjct: 137443 gaataaagaaaatgttatatacac 137466
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 25673 cgatgatgaagtactgcggcacctgcca 25646
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 80207 cgatgatgaagtactgcggcacctgcca 80180
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456F09 Length = 141336 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gaatatagaaaatgttatat 89 |||||||||||||||||||| Sbjct: 5723 gaatatagaaaatgttatat 5742
>dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528E12 Length = 139750 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 gaatatagaaaatgttatat 89 |||||||||||||||||||| Sbjct: 104063 gaatatagaaaatgttatat 104082
>emb|BX537252.4| Mouse DNA sequence from clone RP23-268L10 on chromosome 2, complete sequence Length = 18108 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 tctaaaagagcagccattgc 535 |||||||||||||||||||| Sbjct: 17862 tctaaaagagcagccattgc 17881
>dbj|AK105664.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H07, full insert sequence Length = 2189 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 1600 cgatgatgaagtactgcggcacctgcca 1573
>dbj|AK102216.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L04, full insert sequence Length = 3090 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 2618 cgatgatgaagtactgcggcacctgcca 2591
>dbj|AK070036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036E09, full insert sequence Length = 2307 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 1601 cgatgatgaagtactgcggcacctgcca 1574
>gb|AC120854.15| Mus musculus chromosome 7, clone RP23-329B6, complete sequence Length = 205102 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 atctgtatttactagcaaaa 167 |||||||||||||||||||| Sbjct: 127098 atctgtatttactagcaaaa 127079
>gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, complete sequence Length = 198851 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 ttatcaatacacacagcattctgg 48 |||| ||||||||||||||||||| Sbjct: 189060 ttataaatacacacagcattctgg 189037
>emb|AL359400.4|CNS05TEW Human chromosome 14 DNA sequence BAC R-114L12 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175668 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 gataacaattttctttaatctgta 154 ||||| |||||||||||||||||| Sbjct: 59958 gataaaaattttctttaatctgta 59935
>gb|AC155812.2| Mus musculus BAC clone RP24-139G23 from 12, complete sequence Length = 153018 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 aacaattttctttaatctgtattt 157 ||||||||||| |||||||||||| Sbjct: 97 aacaattttctgtaatctgtattt 74
>dbj|AK058745.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H02, full insert sequence Length = 1984 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 1499 cgatgatgaagtactgcggcacctgcca 1472
>emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 map Xq28, complete sequence Length = 178731 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 tgaatatagaaaatgttatataca 92 |||||| ||||||||||||||||| Sbjct: 22285 tgaatagagaaaatgttatataca 22262
>emb|CR456482.1| Homo sapiens dJ756G23.3 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.dJ756G23.3.V3) Length = 2262 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 1402 tcatcaggtatccatccagg 1383
>gb|AC007014.1|AC007014 Homo sapiens chromosome 16 clone 66H6, complete sequence Length = 167080 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 aatttctgaatatagaaaat 82 |||||||||||||||||||| Sbjct: 103813 aatttctgaatatagaaaat 103794
>gb|AC115692.6| Mus musculus chromosome 18, clone RP23-463G11, complete sequence Length = 227631 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 ttatcaatacacacagcattctgg 48 |||| ||||||||||||||||||| Sbjct: 108260 ttataaatacacacagcattctgg 108283
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 acaccagtagaagtagtcaaggtg 232 |||||||||||||||| ||||||| Sbjct: 1260083 acaccagtagaagtagacaaggtg 1260060
>gb|AF023472.1|AF023472 Hordeum vulgare peptide transporter (ptr1) mRNA, complete cds Length = 2260 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 439 cgatgacgaagtactgcggcagctgcca 466 |||||| |||||||||||||| |||||| Sbjct: 1668 cgatgatgaagtactgcggcacctgcca 1641
>emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chromosome X, complete sequence Length = 252977 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 agacaatgaaatttacagatgaga 198 ||||||||||||||||||| |||| Sbjct: 57139 agacaatgaaatttacagaggaga 57116
>gb|AC155338.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH138P04, complete sequence Length = 137697 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 aaatagatatagacaatgaa 184 |||||||||||||||||||| Sbjct: 86772 aaatagatatagacaatgaa 86791
>emb|AL844565.2| Mouse DNA sequence from clone RP23-427L11 on chromosome 2, complete sequence Length = 95786 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 516 tctaaaagagcagccattgc 535 |||||||||||||||||||| Sbjct: 1754 tctaaaagagcagccattgc 1773
>emb|AL808113.7| Mouse DNA sequence from clone RP23-464N8 on chromosome X, complete sequence Length = 129039 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 agacaatgaaatttacagatgaga 198 ||||||||||||||||||| |||| Sbjct: 64790 agacaatgaaatttacagaggaga 64813
>emb|AL607073.15| Mouse DNA sequence from clone RP23-321K1 on chromosome 4, complete sequence Length = 95219 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 516 tctaaaagagcagccattgc 535 |||||||||||||||||||| Sbjct: 47573 tctaaaagagcagccattgc 47554
>dbj|AK074091.1| Homo sapiens mRNA for FLJ00162 protein Length = 5875 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tcatcaggtatccatccagg 265 |||||||||||||||||||| Sbjct: 3639 tcatcaggtatccatccagg 3620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,719,187 Number of Sequences: 3902068 Number of extensions: 5719187 Number of successful extensions: 112937 Number of sequences better than 10.0: 116 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112316 Number of HSP's gapped (non-prelim): 615 length of query: 628 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 605 effective length of database: 17,143,297,704 effective search space: 10371695110920 effective search space used: 10371695110920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)